genome.fa.s7.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  12  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5563064--5563172	33	3.2	33	71	14	87	59	1	35	2	1.22
5564532--5564566	2	17.5	2	93	0	61	51	2	0	45	1.16
5564591--5564644	27	2.0	27	96	3	92	46	11	22	18	1.80
5568236--5568269	18	1.9	17	88	5	50	17	11	38	32	1.86
5569888--5569925	2	19.5	2	94	5	69	50	0	0	50	1.00
5582560--5582628	33	2.1	33	100	0	138	42	17	5	34	1.73
5587294--5587332	21	1.9	20	84	5	51	64	5	7	23	1.40
5591766--5591799	13	2.8	12	86	4	50	58	5	23	11	1.55
5592671--5592724	2	28.5	2	81	10	69	48	3	0	48	1.19
5592671--5592718	21	2.3	21	100	0	96	47	4	0	47	1.21
5592671--5592727	23	2.6	22	91	8	98	49	5	0	45	1.24
5599434--5599521	39	2.3	39	89	0	131	11	23	20	44	1.84
5599533--5599615	42	2.0	42	90	0	130	16	26	12	44	1.83
5601913--5601981	21	3.2	20	67	25	59	43	0	2	53	1.15
5601912--5601998	45	2.0	44	90	6	140	43	0	5	50	1.26
5604605--5604740	37	3.8	37	74	7	145	38	8	10	43	1.68
5623349--5623434	11	7.5	11	73	13	59	22	2	3	72	1.12
5623380--5623433	12	4.6	12	72	19	51	20	0	1	77	0.86
5624606--5624642	13	2.7	14	84	16	51	5	40	0	54	1.24
5624610--5624644	12	2.8	12	87	12	52	8	42	0	48	1.33
5624606--5624643	14	2.7	15	88	12	62	5	42	0	52	1.24
5632740--5632769	16	1.9	16	93	6	53	30	0	6	63	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5632813--5632981	85	2.0	83	94	2	293	36	6	7	49	1.56
5634673--5634787	27	4.3	27	85	3	133	26	17	31	24	1.97
5656946--5656992	15	2.9	16	81	15	53	55	0	0	44	0.99
5665750--5665892	2	71.5	2	84	2	180	48	4	2	44	1.36
5665932--5666035	2	52.0	2	84	0	136	47	4	2	45	1.39
5669103--5669127	3	8.3	3	100	0	50	68	0	0	32	0.90
5678635--5678662	2	14.0	2	100	0	56	50	0	0	50	1.00
5679718--5679755	12	3.2	12	88	0	58	42	0	7	50	1.31
5701181--5701563	195	2.0	195	83	1	480	25	20	21	32	1.97
5705572--5705616	23	2.0	23	100	0	90	44	13	8	33	1.75
5705797--5705950	79	1.9	79	85	2	211	29	12	25	31	1.93
5720069--5720231	81	2.0	81	96	0	299	24	13	18	43	1.86
5745242--5745273	15	2.0	17	88	11	50	56	0	0	43	0.99
5746418--5746457	17	2.3	17	87	12	55	30	0	0	70	0.88
5746407--5746457	18	2.9	18	85	8	61	35	0	0	64	0.94
5751557--5751600	2	22.0	2	95	0	79	47	0	2	50	1.13
5754717--5754881	80	2.0	83	95	3	300	20	19	2	57	1.51
5757179--5757288	44	2.5	44	100	0	220	28	3	31	36	1.75
5762528--5762575	14	3.4	14	75	13	53	60	14	0	25	1.34
5762895--5762952	29	2.0	29	100	0	116	58	6	0	34	1.25
5762895--5762942	15	3.3	15	70	5	53	64	8	0	27	1.22
5763040--5763093	18	2.9	18	97	2	99	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5769299--5769385	28	3.2	28	63	18	76	47	20	2	29	1.63
5769276--5769385	52	2.1	52	98	0	211	49	17	3	30	1.64
5774611--5774665	29	2.0	28	82	13	69	30	3	3	61	1.30
5778381--5778409	14	2.1	14	93	6	51	58	6	3	31	1.41
5780786--5780823	20	1.9	20	94	0	67	26	10	15	47	1.78
5782904--5782936	14	2.5	14	90	9	52	30	6	0	63	1.18
5788465--5788510	18	2.6	18	92	0	74	19	8	21	50	1.75
5827272--5827372	2	54.0	2	80	13	117	42	0	0	56	0.99
5831575--5831638	28	2.2	28	88	2	92	64	0	0	35	0.94
5833489--5833561	37	2.0	37	91	0	119	8	30	23	38	1.84
5842781--5842828	21	2.3	21	85	7	62	20	35	20	22	1.96
5842826--5842868	22	2.0	23	90	9	72	16	27	39	16	1.90
5847422--5847485	2	32.0	2	90	0	101	54	0	0	45	0.99
5847405--5847485	20	4.1	20	93	0	99	56	0	0	41	0.99
5847405--5847478	16	4.6	16	87	0	85	58	0	0	40	0.98
5849492--5849554	17	3.6	17	76	20	67	1	25	0	73	0.93
5855712--5855759	15	3.3	15	79	2	53	47	0	2	50	1.12
5860536--5860563	3	9.3	3	100	0	56	35	0	64	0	0.94
5872636--5872785	45	3.4	45	66	17	132	42	5	10	42	1.61
5872609--5872838	88	2.6	88	95	2	408	49	3	8	38	1.50
5872654--5872802	43	3.2	49	64	18	138	43	5	10	40	1.62
5872682--5872830	43	3.4	43	66	17	126	50	3	8	38	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5872609--5872881	88	3.1	88	88	5	293	49	5	6	38	1.52
5877784--5877860	34	2.3	34	81	0	91	36	19	11	32	1.88
5883699--5883727	14	2.1	14	100	0	58	44	0	0	55	0.99
5883699--5883741	17	2.8	15	86	10	52	46	2	0	51	1.13
5883825--5883864	20	2.0	20	100	0	80	35	5	10	50	1.58
5891381--5891434	20	2.7	19	75	8	54	42	1	0	55	1.10
5891752--5891785	16	2.2	15	89	5	50	67	14	2	14	1.34
5896486--5896528	5	8.6	5	94	0	77	0	20	0	79	0.74
5896660--5896725	34	2.0	33	82	8	80	25	16	15	42	1.87
5896844--5896926	34	2.4	34	89	0	130	36	31	14	18	1.90
5900753--5900800	22	2.1	22	84	3	60	70	8	6	14	1.31
5912664--5912741	38	2.1	38	100	0	156	39	7	17	34	1.79
5923411--5923527	13	8.5	14	68	20	61	30	0	0	68	0.96
5923359--5923502	57	2.4	59	77	11	134	34	0	0	64	0.99
5923439--5923617	40	4.2	40	72	16	130	29	2	0	68	1.02
5923439--5923502	20	3.2	20	70	12	60	29	0	0	70	0.88
5923471--5923597	54	2.3	54	76	9	125	29	3	0	67	1.06
5923456--5923617	87	1.8	88	87	9	240	29	2	0	68	1.02
5923544--5923622	5	15.2	5	70	17	54	26	1	0	72	0.93
5923570--5923621	7	7.3	7	80	4	50	25	0	0	75	0.81
5923543--5923633	33	2.8	33	85	11	109	29	1	0	69	0.96
5925749--5925809	31	2.0	31	100	0	122	49	6	9	34	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5927511--5927543	6	5.5	6	92	0	57	18	33	15	33	1.92
5927714--5927747	6	5.7	6	96	0	50	0	44	0	55	0.99
5927714--5927750	12	3.1	12	92	0	56	0	43	0	56	0.99
5936120--5936152	2	17.0	2	93	6	59	0	48	0	51	1.00
5936152--5936185	2	17.0	2	100	0	68	50	0	0	50	1.00
5951301--5951334	15	2.3	14	85	14	50	58	2	2	35	1.28
5951618--5951703	28	3.1	28	81	8	88	30	10	13	45	1.78
5951941--5951974	17	2.0	17	94	0	59	47	8	11	32	1.71
5960565--5960603	2	19.5	2	100	0	78	51	0	0	48	1.00
5962075--5962126	24	2.2	24	85	0	68	44	3	42	9	1.55
5967802--5967849	23	2.1	23	84	7	62	58	4	0	37	1.18
5975797--5975895	45	2.2	45	89	3	146	33	12	19	35	1.88
5975918--5976075	45	3.4	45	72	9	120	31	15	18	34	1.93
5975796--5976054	121	2.1	121	84	1	331	34	13	17	34	1.89
5976040--5976096	21	2.7	21	100	0	114	19	21	26	33	1.97
5976184--5976246	29	2.2	29	91	0	99	42	9	11	36	1.73
5976183--5976255	29	2.5	30	84	8	96	41	9	10	38	1.73
5981478--5981598	42	2.8	43	79	7	138	28	15	20	35	1.93
5984353--5984384	16	2.0	16	100	0	64	56	6	25	12	1.59
5988238--5988291	17	3.2	16	80	12	56	31	3	0	64	1.11
5988228--5988322	17	5.7	16	67	21	52	26	2	2	69	1.11
5988447--5988495	16	3.0	17	85	8	57	26	0	2	71	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5988458--5988496	4	9.8	4	83	10	53	25	0	0	74	0.82
5988588--5988617	13	2.3	13	100	0	60	33	6	6	53	1.53
5989225--5989291	32	2.1	32	97	0	125	2	47	23	25	1.66
5989360--5989471	52	2.2	52	90	3	172	4	51	16	26	1.64
5993279--5993325	2	23.5	2	87	8	69	48	2	2	46	1.25
5996711--5996780	29	2.4	29	74	11	70	51	8	10	30	1.65
6004500--6004773	35	7.8	35	83	3	302	43	14	5	36	1.69
6004500--6004773	71	3.9	70	83	4	320	43	14	5	36	1.69
6012817--6012920	42	2.4	43	84	6	131	22	16	24	37	1.93
6012820--6012937	42	2.8	43	78	6	116	23	14	25	36	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54