genome.fa.s7.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  44  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17527793--17527850	28	2.1	28	84	9	75	24	22	22	31	1.99
17527904--17527941	20	1.9	20	94	0	67	42	21	7	28	1.81
17530440--17530599	68	2.3	69	82	3	198	35	23	9	31	1.87
17530440--17530648	68	3.1	67	77	5	197	33	21	11	33	1.89
17531009--17531054	21	2.2	21	92	0	74	34	28	10	26	1.90
17552702--17552761	30	2.0	30	96	0	111	26	8	20	45	1.79
17555254--17555314	26	2.3	26	83	8	70	19	13	8	59	1.59
17555616--17555680	23	2.8	23	78	0	58	35	15	18	30	1.92
17555745--17556018	46	6.0	46	67	5	140	29	9	27	34	1.87
17555715--17555961	23	10.7	23	73	5	142	28	8	27	34	1.87
17555730--17555897	92	1.8	92	89	0	264	27	7	26	38	1.84
17555794--17556035	69	3.5	69	76	4	245	30	9	25	34	1.89
17555746--17555961	92	2.3	92	82	1	236	29	8	27	35	1.86
17561814--17561886	37	2.0	37	86	0	101	23	16	35	24	1.95
17566078--17566180	43	2.4	43	85	0	125	29	19	33	18	1.96
17566420--17566479	21	2.9	21	100	0	120	28	23	20	28	1.99
17566564--17566714	60	2.5	59	83	3	185	22	20	21	35	1.96
17572085--17572466	191	2.0	191	99	0	748	29	17	25	27	1.98
17576161--17576190	9	3.3	9	100	0	60	0	13	10	76	1.01
17576327--17576367	22	1.9	22	85	5	57	26	17	4	51	1.65
17583776--17583817	21	2.0	21	86	9	59	11	26	0	61	1.30
17583776--17583817	11	4.0	11	90	6	61	11	26	0	61	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17587446--17587688	43	5.8	43	84	5	318	23	15	34	26	1.95
17587522--17587597	37	2.1	37	89	0	116	22	11	36	28	1.90
17587441--17587640	80	2.4	80	82	5	247	24	15	34	27	1.94
17587446--17587676	123	1.9	123	88	0	354	23	15	33	26	1.95
17590623--17590667	22	2.1	21	83	4	54	33	20	17	28	1.95
17590904--17591050	42	3.5	41	82	3	168	22	31	20	25	1.98
17590904--17591057	84	1.8	84	84	2	211	22	31	20	25	1.98
17599590--17599653	22	2.9	22	79	6	67	46	26	10	15	1.79
17599437--17599937	207	2.4	203	84	4	662	41	24	12	20	1.87
17599804--17599859	22	2.5	22	82	5	60	50	23	10	16	1.76
17599874--17600001	64	2.0	63	95	1	229	41	25	10	21	1.85
17601744--17601801	22	2.6	22	86	0	80	39	25	17	17	1.91
17603390--17603429	21	1.9	21	84	0	53	40	2	35	22	1.68
17610215--17610251	18	2.1	18	94	0	65	24	5	40	29	1.77
17611771--17611803	17	1.9	17	100	0	66	30	12	36	21	1.90
17613327--17613370	22	2.0	22	100	0	88	27	4	18	50	1.66
17620027--17620066	14	2.9	14	96	0	71	30	15	7	47	1.72
17625788--17625855	34	2.0	34	82	0	82	29	27	13	29	1.94
17626642--17626698	22	2.6	22	91	0	96	19	14	21	45	1.85
17626748--17626804	22	2.6	23	75	5	64	22	12	28	36	1.90
17626748--17626815	22	3.1	21	68	8	55	23	11	26	38	1.89
17626841--17626924	23	3.7	23	73	9	82	35	27	14	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17626838--17626978	45	3.2	45	79	1	158	40	23	12	23	1.89
17626927--17626998	22	3.3	22	78	0	72	44	19	13	22	1.86
17626909--17627001	44	2.1	44	85	0	123	43	21	13	21	1.87
17627099--17627229	51	2.6	51	85	2	167	38	19	7	33	1.80
17628600--17628746	74	2.0	74	94	1	260	30	10	13	44	1.78
17631866--17631902	11	3.4	11	88	0	56	54	0	2	43	1.14
17637073--17637128	25	2.2	25	83	0	76	26	16	30	26	1.96
17638522--17638571	21	2.4	21	96	0	91	58	10	0	32	1.31
17641425--17641463	19	2.0	20	90	5	62	64	7	0	28	1.21
17641595--17641744	44	3.5	42	77	7	124	36	24	14	25	1.93
17641615--17641745	44	3.0	44	79	3	140	36	22	16	25	1.94
17646093--17646166	30	2.5	30	97	0	139	39	6	20	33	1.79
17646411--17646460	2	25.0	2	100	0	100	50	0	0	50	1.00
17646501--17646625	42	3.0	42	90	0	187	21	33	22	22	1.97
17688452--17688607	30	5.2	30	75	10	99	42	10	17	28	1.82
17688491--17688604	60	1.9	60	87	1	167	44	10	16	28	1.81
17688523--17688611	30	3.0	29	82	11	108	44	11	16	26	1.82
17688493--17688622	60	2.2	59	83	1	152	40	13	16	29	1.86
17690314--17690481	73	2.3	73	86	3	232	29	35	13	20	1.92
17701978--17702007	13	2.3	13	94	0	51	70	0	3	26	1.03
17703712--17703875	23	7.1	23	70	9	111	22	14	17	45	1.85
17703731--17703875	68	2.1	68	82	2	166	22	13	17	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17704569--17704597	13	2.2	13	100	0	58	37	24	13	24	1.91
17711381--17711411	13	2.3	14	94	5	55	83	0	3	12	0.75
17719889--17719943	20	2.6	21	88	5	76	67	0	32	0	0.91
17725624--17725693	29	2.4	29	97	0	131	42	15	5	35	1.71
17727115--17727155	21	2.0	21	85	0	55	36	26	12	24	1.91
17728624--17728656	16	2.1	16	88	5	50	42	12	9	36	1.74
17731232--17731399	86	2.0	86	89	0	255	33	17	14	33	1.91
17731381--17731479	29	3.6	28	72	13	89	36	15	12	36	1.84
17731546--17731618	27	2.6	27	82	6	74	30	16	13	39	1.87
17732002--17732031	2	15.0	2	100	0	60	50	0	0	50	1.00
17733003--17733121	37	3.2	37	91	4	195	26	36	8	28	1.85
17735171--17735336	29	5.8	27	76	11	134	36	10	10	42	1.74
17735181--17735338	57	2.8	56	80	8	174	39	10	10	39	1.74
17736494--17736545	27	1.9	27	92	0	86	34	17	11	36	1.86
17737475--17737669	49	4.0	49	73	18	188	38	16	10	34	1.83
17739516--17739547	16	2.0	16	93	0	55	65	18	3	12	1.38
17742043--17742149	35	3.1	35	87	1	153	28	11	30	29	1.91
17742180--17742226	2	23.5	2	100	0	94	48	0	0	51	1.00
17751754--17751784	15	2.1	15	93	0	53	80	0	3	16	0.83
17754045--17754093	21	2.3	21	75	3	53	40	10	40	8	1.69
17756496--17756562	2	33.0	2	87	3	98	53	0	0	44	1.00
17758388--17758443	29	1.9	29	92	0	94	64	1	0	33	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17771359--17771388	2	15.0	2	100	0	60	50	0	0	50	1.00
17772599--17772637	9	4.6	8	84	9	51	43	0	0	56	0.99
17772723--17772762	15	2.4	17	84	16	57	57	0	2	40	1.12
17775967--17776056	39	2.2	40	90	3	137	30	18	14	36	1.91
17778934--17779054	60	2.0	60	93	0	206	43	7	10	38	1.68
17790503--17790543	12	3.4	12	82	0	55	41	0	0	58	0.98
17800520--17800570	23	2.2	24	89	3	77	39	5	5	49	1.51
17800520--17800571	25	2.1	24	82	10	61	40	5	5	48	1.51
17803796--17803848	25	2.1	25	92	0	88	52	15	11	20	1.72
17807583--17807672	2	42.5	2	90	8	119	46	5	0	46	1.26
17812572--17812629	20	3.0	20	82	7	66	51	0	6	41	1.28
17812603--17812658	18	3.1	18	71	5	58	55	1	0	42	1.10
17815866--17815898	15	2.2	15	94	0	57	51	12	0	36	1.39
17816250--17816307	20	3.0	20	82	7	66	51	0	6	41	1.28
17828299--17828350	28	1.9	27	84	7	70	28	21	19	30	1.97
17828396--17828441	20	2.3	20	96	0	83	45	21	4	28	1.71
17833476--17833511	14	2.6	14	90	0	54	27	0	13	58	1.36
17834654--17834712	2	29.5	2	100	0	118	50	0	49	0	1.00
17835231--17835339	54	2.0	54	96	0	200	44	1	5	48	1.36
17836043--17836105	16	3.8	16	72	24	51	66	0	33	0	0.92
17836029--17836105	22	3.7	20	79	10	82	66	0	33	0	0.92
17836033--17836101	36	1.9	36	85	11	97	65	0	34	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17837564--17837603	20	2.0	20	90	0	62	30	25	5	40	1.77
17838517--17838585	35	2.0	35	88	0	102	24	11	33	30	1.91
17838625--17838680	21	2.7	21	86	2	78	35	7	17	39	1.78
17842914--17843041	43	3.0	42	86	4	168	23	35	17	23	1.96
17844265--17844390	42	3.0	42	92	0	207	20	23	34	22	1.97
17844663--17844725	21	3.0	21	83	0	90	39	22	20	17	1.92
17844853--17844889	19	1.9	19	100	0	74	21	21	29	27	1.99
17851926--17852035	42	2.6	41	91	2	175	21	20	34	22	1.97
17854263--17854300	19	2.0	19	100	0	76	26	0	31	42	1.56
17855537--17855561	13	1.9	13	100	0	50	44	0	8	48	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54