genome.fa.s7.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  48  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19193793--19193825	18	1.9	17	88	11	50	60	15	0	24	1.35
19196600--19196638	20	1.9	20	84	5	51	64	2	30	2	1.21
19198931--19198975	21	2.2	21	88	11	67	13	20	8	57	1.62
19200264--19200289	5	5.2	5	100	0	52	80	0	0	19	0.71
19200667--19200749	34	2.4	34	83	2	94	25	13	32	28	1.93
19200686--19200778	34	2.7	34	81	6	116	21	13	31	33	1.93
19200856--19200955	34	3.0	33	77	8	105	37	13	26	24	1.91
19201101--19201161	10	5.9	10	84	3	68	73	1	16	8	1.14
19201093--19201151	20	3.0	20	82	4	77	76	0	16	6	1.00
19201088--19201148	5	12.4	5	80	5	63	75	0	19	4	0.98
19201180--19201228	25	2.0	25	88	8	73	46	14	22	16	1.82
19201189--19201241	25	2.1	24	83	13	63	45	15	22	16	1.85
19203964--19204033	35	2.0	34	83	8	88	30	10	25	34	1.89
19210824--19210872	21	2.4	18	76	23	53	12	26	8	53	1.66
19215648--19215674	2	13.5	2	100	0	54	51	0	0	48	1.00
19215706--19215820	43	2.7	42	90	4	185	22	35	18	23	1.95
19217822--19217873	7	7.4	7	75	16	54	3	28	0	67	1.08
19217825--19217880	28	2.0	29	86	10	80	3	30	0	66	1.09
19226972--19227031	28	2.1	28	84	6	75	41	21	8	28	1.82
19228334--19228481	64	2.3	63	82	5	181	30	12	25	31	1.93
19228499--19228536	20	1.9	20	94	0	67	31	36	2	28	1.71
19231896--19232098	69	3.0	69	76	7	189	33	21	9	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19231974--19232115	68	2.1	69	81	6	164	34	21	11	31	1.90
19234855--19235075	68	3.2	68	85	5	268	31	15	17	35	1.92
19238762--19238831	2	37.0	2	88	11	112	50	0	0	50	1.00
19239392--19239462	2	35.5	2	100	0	142	50	0	0	49	1.00
19241989--19242023	15	2.2	16	90	5	54	37	5	20	37	1.76
19244603--19244670	30	2.3	30	87	5	93	13	32	4	50	1.61
19244593--19244643	21	2.4	22	72	18	54	13	31	1	52	1.51
19255885--19255939	18	2.8	18	81	13	56	23	1	0	74	0.91
19255885--19255976	26	3.5	26	68	19	66	25	1	1	72	0.97
19255894--19255970	41	1.9	40	86	7	111	25	1	1	71	1.01
19255909--19255970	11	5.9	11	72	24	53	29	0	1	69	0.98
19255909--19255971	14	4.6	14	76	13	60	28	0	1	69	0.97
19266799--19266844	15	3.1	15	90	0	74	56	15	2	26	1.50
19272101--19272342	37	6.5	37	85	0	295	40	18	16	23	1.90
19272103--19272353	111	2.2	113	89	4	391	40	18	16	24	1.90
19274437--19274468	16	2.0	16	100	0	64	37	18	18	25	1.94
19284538--19284618	10	8.0	10	70	22	53	25	1	1	71	1.01
19284537--19284618	40	2.0	43	81	15	102	26	1	1	70	1.02
19290219--19290277	28	2.1	29	83	3	75	42	13	8	35	1.75
19291978--19292002	13	1.9	13	100	0	50	48	8	0	44	1.32
19297003--19297035	5	6.8	5	93	6	59	39	21	0	39	1.53
19297003--19297035	14	2.3	15	94	5	59	39	21	0	39	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19297070--19297115	15	3.1	15	81	12	58	56	17	2	23	1.52
19299915--19299952	19	2.0	19	94	0	67	42	28	0	28	1.56
19303423--19303466	10	4.3	11	83	16	51	0	25	2	72	0.96
19305843--19305877	18	1.9	18	88	0	52	37	11	17	34	1.85
19330268--19330319	20	2.6	20	84	6	61	36	19	19	25	1.95
19332388--19332412	13	1.9	13	100	0	50	48	20	8	24	1.76
19336982--19337321	54	6.1	54	78	9	308	26	20	15	37	1.92
19336979--19337304	117	2.9	114	79	8	362	26	19	16	37	1.93
19339638--19339678	20	2.0	20	95	0	73	41	0	14	43	1.45
19339647--19339696	25	2.0	25	84	7	66	44	0	20	36	1.52
19340792--19340906	57	2.0	57	81	6	135	42	7	6	43	1.58
19340849--19341022	80	2.2	77	83	3	204	41	8	6	43	1.62
19343909--19343946	18	2.1	18	85	9	51	34	5	2	57	1.35
19345698--19345750	13	3.9	14	76	11	56	56	5	3	33	1.41
19346206--19346257	20	2.6	20	84	0	59	36	17	21	25	1.94
19346656--19346722	26	2.6	26	100	0	134	31	8	26	32	1.87
19348950--19348996	17	2.8	16	81	15	51	40	4	0	55	1.19
19352308--19352345	19	2.0	19	89	0	58	42	31	0	26	1.56
19352902--19352953	20	2.6	20	87	0	68	38	17	19	25	1.93
19355694--19355732	20	2.0	20	89	0	60	41	20	17	20	1.91
19357807--19357831	13	1.9	13	100	0	50	48	20	8	24	1.76
19360577--19360610	9	3.8	9	88	0	50	20	0	2	76	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19361874--19361902	14	2.1	14	100	0	58	34	6	17	41	1.76
19362108--19362155	14	3.5	14	75	16	55	79	0	0	20	0.74
19362630--19362694	18	3.7	18	73	17	64	76	1	1	20	0.94
19362630--19362695	26	2.5	26	85	7	89	75	1	1	21	0.96
19362807--19362866	29	2.0	31	83	9	79	71	0	5	23	1.05
19365944--19365970	2	13.5	2	100	0	54	51	0	0	48	1.00
19385374--19385412	2	19.5	2	100	0	78	51	48	0	0	1.00
19385471--19385598	43	3.0	43	88	0	175	24	21	33	20	1.97
19385626--19385673	2	24.0	2	87	8	71	50	0	4	45	1.21
19389180--19389273	43	2.2	43	84	3	118	26	34	13	25	1.94
19392266--19392379	60	1.9	58	82	7	140	33	12	21	32	1.91
19395145--19395209	34	1.9	34	90	9	107	35	29	15	20	1.93
19395204--19395322	29	4.1	29	93	0	175	23	21	18	36	1.95
19404265--19404293	13	2.1	14	93	6	51	68	3	0	27	1.05
19404748--19404799	20	2.6	20	84	0	59	36	17	21	25	1.94
19408555--19408606	20	2.6	20	87	0	68	38	17	19	25	1.93
19408736--19408794	25	2.3	25	77	8	66	74	5	10	10	1.20
19409966--19410009	2	22.0	2	100	0	88	50	0	0	50	1.00
19412852--19412905	26	2.1	25	82	3	63	53	0	1	44	1.11
19417196--19417445	80	3.1	78	76	9	218	34	24	10	31	1.88
19423469--19423527	26	2.3	26	82	5	75	3	27	1	67	1.16
19432088--19432141	2	27.5	2	96	3	101	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19433625--19433655	14	2.2	14	100	0	62	25	48	9	16	1.76
19434029--19434343	163	2.0	160	89	3	488	42	10	7	39	1.67
19434029--19434343	82	3.9	82	91	1	478	42	10	7	39	1.67
19434644--19434677	17	2.0	17	94	0	59	32	5	32	29	1.81
19434708--19434761	23	2.2	25	74	16	67	40	16	25	16	1.89
19434727--19434820	25	3.8	25	91	2	147	36	15	24	23	1.94
19434822--19434993	49	3.5	49	92	1	272	31	18	24	25	1.97
19442607--19442941	36	8.8	40	73	19	277	38	19	18	23	1.93
19442607--19442941	76	4.4	76	88	1	492	38	19	18	23	1.93
19443719--19443838	60	2.0	59	95	1	213	33	12	22	30	1.91
19443919--19444018	28	3.4	28	77	12	119	34	15	7	44	1.73
19443919--19444035	61	1.9	61	91	0	189	35	15	5	43	1.71
19444384--19444670	82	3.5	82	93	0	472	41	12	7	39	1.71
19444947--19445004	17	3.4	17	85	2	80	31	10	29	29	1.90
19445055--19445172	25	4.8	25	93	2	186	35	16	24	23	1.94
19445174--19445345	49	3.5	49	91	1	263	33	17	24	25	1.96
19445486--19445602	45	2.6	44	86	4	153	40	13	17	29	1.87
19445618--19445762	45	3.2	45	88	0	200	35	15	18	29	1.92
19445734--19446010	24	12.0	24	62	13	89	38	19	17	24	1.93
19445487--19445871	159	2.4	159	88	0	581	38	16	17	27	1.91
19445759--19445871	45	2.5	45	89	0	163	37	19	18	24	1.94
19445487--19445990	159	3.2	157	84	3	501	37	16	17	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19445877--19445990	45	2.5	45	87	2	149	35	19	18	26	1.95
19445916--19446059	69	2.1	69	90	0	225	36	20	18	25	1.95
19445985--19446079	45	2.1	45	88	0	136	32	21	18	27	1.97
19445646--19446079	114	3.8	114	88	1	618	36	18	17	27	1.93
19446096--19446154	24	2.4	24	77	11	66	37	15	16	30	1.90
19446065--19446216	30	5.4	30	71	15	101	40	13	13	32	1.84
19449198--19449230	2	16.5	2	93	0	57	45	0	0	54	0.99
19449639--19449677	15	2.5	15	87	4	51	64	0	0	35	0.94
19452685--19452730	23	2.0	22	84	12	58	54	13	6	26	1.62
19452730--19452799	28	2.4	29	79	18	74	42	4	2	50	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54