genome.fa.s7.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  7  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3174382--3174888	255	2.0	254	96	1	944	29	11	19	38	1.87
3176083--3176143	29	2.1	28	82	8	70	14	18	11	55	1.68
3187946--3188008	33	1.9	33	96	0	117	33	22	4	39	1.75
3191796--3191942	74	2.0	74	100	0	294	48	12	28	10	1.74
3201209--3201288	29	2.7	29	84	1	106	50	8	26	15	1.72
3201507--3201586	35	2.3	35	84	4	99	20	13	15	51	1.76
3201523--3201646	35	3.5	35	79	5	126	20	13	17	48	1.81
3201566--3201656	35	2.6	34	81	6	101	17	14	19	48	1.81
3203686--3203790	30	3.6	29	77	12	97	33	11	6	48	1.65
3204624--3204664	20	2.0	20	86	9	57	21	12	4	60	1.50
3212255--3212306	21	2.5	21	75	6	52	17	1	40	40	1.60
3214924--3215009	32	2.6	32	85	9	102	66	0	5	27	1.15
3222049--3222114	27	2.4	27	80	9	71	50	4	3	42	1.38
3222649--3222694	16	2.8	17	77	9	51	41	4	4	50	1.42
3232624--3232737	34	3.4	34	79	6	106	47	13	7	31	1.71
3232624--3232703	33	2.4	34	82	4	90	48	11	7	32	1.67
3235508--3235600	27	3.6	27	66	8	75	31	12	9	46	1.75
3235507--3235621	51	2.3	51	98	0	221	34	12	8	44	1.73
3235535--3235615	24	3.2	24	66	10	72	38	12	7	41	1.71
3244408--3244440	17	2.0	16	94	5	57	57	0	6	36	1.23
3248604--3248638	18	2.1	16	89	10	52	82	0	0	17	0.66
3248607--3248632	10	2.6	10	100	0	52	84	0	0	15	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3249662--3249688	8	3.4	8	100	0	54	88	0	0	11	0.50
3264196--3264240	20	2.3	20	85	7	58	68	4	6	20	1.29
3266507--3266548	21	2.0	21	100	0	84	33	19	23	23	1.97
3306838--3306921	13	7.0	12	70	16	50	25	1	0	73	0.90
3306850--3306913	15	4.3	15	71	15	53	26	1	0	71	0.94
3328996--3329025	14	2.1	15	93	6	53	0	23	0	76	0.78
3333020--3333053	10	3.4	10	87	0	50	5	5	0	88	0.64
3337937--3337978	22	1.9	22	100	0	84	11	21	19	47	1.81
3338654--3338709	28	2.0	28	100	0	112	39	7	21	32	1.80
3338655--3338718	28	2.3	28	91	5	103	43	7	17	31	1.77
3345537--3345579	11	3.8	11	80	14	52	46	2	4	46	1.36
3345647--3345680	10	3.4	10	87	0	50	41	0	0	58	0.98
3345786--3345836	2	26.0	2	92	4	86	47	0	0	52	1.00
3349064--3349104	21	2.0	20	86	13	57	34	2	0	63	1.08
3349952--3350012	2	30.0	2	90	3	95	49	4	0	45	1.23
3360959--3360983	3	8.3	3	100	0	50	68	0	0	32	0.90
3370159--3370186	2	14.0	2	100	0	56	50	0	50	0	1.00
3371254--3371282	2	14.5	2	100	0	58	48	0	0	51	1.00
3386934--3386986	27	2.0	27	84	0	70	54	7	9	28	1.59
3388821--3388860	20	2.0	20	95	0	71	40	22	15	22	1.91
3391988--3392013	13	2.0	13	100	0	52	69	7	7	15	1.35
3393115--3393152	7	5.6	7	96	3	69	39	15	15	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3398296--3398408	44	2.5	45	86	2	147	44	6	10	38	1.64
3422640--3422695	21	2.6	22	77	5	69	19	12	23	44	1.84
3422730--3422950	23	9.4	24	79	12	176	36	27	13	23	1.92
3422867--3422906	21	1.9	21	89	0	62	40	22	15	22	1.91
3423515--3423670	74	2.1	74	89	4	235	44	10	14	30	1.78
3462496--3462587	42	2.2	42	94	2	157	29	17	15	38	1.90
3463443--3463492	24	2.1	24	100	0	100	40	8	22	30	1.82
3486164--3486195	2	17.0	2	87	12	50	50	0	0	50	1.00
3486164--3486195	7	4.2	8	84	15	50	50	0	0	50	1.00
3486161--3486195	18	2.0	17	94	5	61	51	0	0	48	1.00
3489371--3489441	34	2.1	34	94	0	124	32	36	11	19	1.87
3494942--3495083	74	1.9	74	91	0	230	45	8	4	42	1.54
3495153--3495264	54	2.1	53	93	1	188	33	4	16	44	1.67
3500624--3500667	21	2.1	21	87	8	63	27	20	6	45	1.76
3506948--3506972	11	2.3	11	100	0	50	16	28	16	40	1.89
3510214--3510251	2	19.0	2	88	0	58	55	0	0	44	0.99
3512449--3512477	3	9.7	3	100	0	58	34	0	0	65	0.93
3512680--3512745	32	2.0	32	85	2	87	57	3	15	24	1.52
3512696--3512757	32	2.1	30	85	11	83	54	3	17	24	1.57
3520316--3520544	85	2.8	84	86	6	308	40	12	17	29	1.86
3520477--3520626	74	2.0	75	91	5	243	48	9	12	30	1.73
3528177--3528671	250	2.0	249	99	0	972	29	22	17	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3531795--3531885	42	2.2	42	86	4	121	28	18	16	36	1.93
3550545--3550579	16	2.2	16	100	0	70	28	40	0	31	1.57
3564516--3564643	61	2.1	62	89	1	195	39	14	18	27	1.89
3564377--3564725	145	2.4	146	87	2	479	39	14	17	28	1.89
3564698--3564892	44	4.7	43	66	14	131	38	16	14	29	1.89
3564602--3565543	127	7.7	127	88	7	1407	39	15	14	30	1.87
3564755--3565498	114	6.2	114	87	10	1067	39	15	14	30	1.87
3564602--3565543	359	2.6	364	93	3	1581	39	15	14	30	1.87
3564869--3565498	242	2.6	243	94	2	1095	39	15	14	30	1.87
3572407--3572482	18	4.2	18	70	17	59	2	19	0	77	0.88
3573061--3573146	10	9.4	9	75	18	72	0	17	1	81	0.76
3573062--3573146	8	10.2	8	72	13	57	0	16	1	82	0.73
3573062--3573156	34	2.9	31	75	18	93	1	15	1	82	0.79
3573064--3573146	27	3.1	26	80	11	105	0	16	1	81	0.75
3585940--3585981	18	2.2	20	87	12	61	76	0	19	4	0.96
3592069--3592219	21	7.2	21	59	24	50	23	33	4	37	1.76
3592066--3592236	42	4.0	42	99	0	333	26	32	4	36	1.77
3601332--3601379	22	2.1	23	88	7	71	0	29	2	68	1.01
3602282--3602312	15	2.1	15	100	0	62	41	6	0	51	1.27
3608888--3609016	64	2.0	64	87	0	186	30	25	13	30	1.94
3609442--3609494	26	2.0	26	82	13	65	49	3	20	26	1.66
3610110--3610256	73	2.0	73	100	0	294	22	10	20	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3613405--3613439	8	4.2	8	85	7	52	37	2	0	60	1.12
3613405--3613439	17	2.1	16	89	5	52	37	2	0	60	1.12
3613434--3613487	28	2.0	27	82	10	67	53	0	1	44	1.11
3616135--3616175	21	1.9	22	90	5	66	21	2	0	75	0.92
3616146--3616209	17	3.8	17	80	12	78	21	1	1	75	0.98
3616178--3616224	23	2.0	23	88	8	69	21	6	0	72	1.07
3616328--3616409	3	29.0	3	75	11	59	25	2	1	70	1.06
3616328--3616387	19	3.3	19	75	15	72	25	3	0	71	1.01
3616324--3616408	11	7.5	11	78	17	77	24	2	1	71	1.04
3616364--3616415	24	2.2	24	82	0	59	23	1	3	71	1.13
3616675--3616718	20	2.1	20	83	8	52	25	0	2	72	0.96
3616903--3616973	28	2.5	30	80	11	78	23	4	0	71	1.03
3616921--3616971	13	3.9	13	82	7	50	27	1	0	70	0.98
3617094--3617144	21	2.3	22	86	6	68	50	5	3	39	1.45
3619436--3619480	2	22.5	2	100	0	90	51	0	0	48	1.00
3619866--3620137	131	2.0	138	82	11	337	27	11	12	48	1.75
3626495--3626529	15	2.3	15	90	9	54	51	5	0	42	1.25
3648220--3648324	52	2.0	52	98	0	201	38	13	3	44	1.62
3694379--3694409	2	15.5	2	100	0	62	48	0	0	51	1.00
3715717--3715779	32	2.0	32	93	0	108	23	25	20	30	1.99
3717479--3717524	18	2.5	18	92	3	74	56	0	6	36	1.25
3718451--3718541	20	4.9	18	77	15	80	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3718474--3718556	5	17.2	5	74	16	77	67	0	32	0	0.91
3718454--3718552	25	3.9	25	92	7	148	67	0	32	0	0.91
3725574--3725602	11	2.5	12	94	5	51	48	0	31	20	1.50
3730907--3730976	35	2.0	35	94	0	122	25	24	10	40	1.86
3738508--3738794	157	1.8	157	93	0	502	32	17	23	26	1.96
3741615--3741681	28	2.4	28	95	5	118	17	7	11	62	1.51
3746999--3747026	14	2.0	14	100	0	56	28	7	14	50	1.69
3748491--3748685	39	5.0	39	79	2	203	31	6	18	43	1.75
3748492--3748663	77	2.2	78	82	5	195	31	5	18	44	1.74
3749398--3749451	26	2.1	26	96	0	99	33	20	5	40	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54