genome.fa.s7.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  6  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2629519--2630290	288	2.7	288	83	3	914	28	22	18	30	1.97
2636110--2636879	144	5.4	143	81	5	797	27	22	19	30	1.98
2636107--2636879	288	2.7	288	83	5	947	27	22	19	30	1.98
2672050--2672114	11	5.6	11	69	16	51	41	0	1	56	1.08
2673814--2673872	24	2.5	25	86	8	79	37	0	0	62	0.95
2673825--2673882	25	2.3	26	79	8	75	46	0	0	53	1.00
2673946--2674015	22	3.0	22	74	15	68	50	0	0	50	1.00
2673882--2674009	8	16.4	8	69	15	63	57	0	0	42	0.99
2675408--2675432	13	1.9	13	100	0	50	92	8	0	0	0.40
2676495--2676736	121	2.0	121	93	2	407	52	4	12	30	1.57
2680189--2680455	141	1.9	141	80	3	313	27	23	19	29	1.98
2695842--2695975	69	1.9	68	82	5	162	19	29	11	38	1.88
2696525--2696868	144	2.4	144	87	2	480	28	22	18	30	1.97
2696539--2696921	144	2.7	142	84	4	389	29	23	18	29	1.97
2713431--2713612	89	2.0	91	95	3	332	23	11	16	48	1.78
2714628--2714672	23	1.9	23	86	4	63	40	13	8	37	1.76
2714640--2714685	23	2.0	23	91	0	74	39	10	13	36	1.79
2719852--2719897	23	2.0	23	95	0	83	36	10	13	39	1.79
2726255--2726592	144	2.4	144	86	5	456	27	22	19	30	1.98
2732393--2732772	144	2.7	144	79	3	374	29	21	17	31	1.96
2735959--2736119	80	2.0	80	98	0	313	46	13	6	33	1.69
2742038--2742077	21	1.9	21	85	10	55	60	2	7	30	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2749354--2749809	225	2.0	228	86	2	632	30	19	10	40	1.84
2763014--2763193	89	2.0	90	95	3	328	23	11	16	48	1.79
2765706--2765745	21	1.9	21	85	10	55	60	2	7	30	1.38
2792802--2792826	12	2.1	12	100	0	50	8	28	24	40	1.83
2795233--2795382	69	2.2	69	80	9	173	24	22	15	38	1.92
2795913--2796674	144	5.3	144	82	5	805	28	22	18	30	1.97
2795910--2796674	288	2.7	283	84	4	939	28	22	18	29	1.97
2800605--2800701	49	2.0	48	95	0	167	38	15	11	34	1.83
2802858--2802886	3	9.7	3	100	0	58	68	0	0	31	0.89
2811662--2811959	155	1.9	155	94	0	524	18	16	22	42	1.89
2811981--2812060	34	2.4	34	100	0	160	15	17	25	42	1.88
2812286--2812328	2	23.0	2	86	13	65	51	0	0	48	1.00
2812286--2812329	14	3.4	13	90	9	72	52	0	0	47	1.00
2812871--2812912	21	2.0	22	85	4	59	66	0	0	33	0.92
2813421--2813446	2	13.0	2	100	0	52	0	50	0	50	1.00
2820476--2820560	31	2.8	31	82	10	88	32	5	3	57	1.40
2820651--2820696	20	2.4	20	85	7	60	45	6	6	41	1.56
2836156--2836373	109	2.0	109	95	0	391	31	9	17	41	1.82
2845463--2845509	25	2.0	25	83	8	62	68	2	4	25	1.19
2856669--2856717	25	2.0	24	84	4	62	28	12	10	48	1.73
2860624--2860735	57	2.0	57	94	3	199	37	22	5	34	1.77
2879198--2879263	28	2.4	28	100	0	132	25	28	28	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2880544--2880615	29	2.6	27	74	22	67	58	6	18	16	1.60
2880553--2880644	29	3.1	29	80	9	80	54	10	20	14	1.69
2882587--2883699	228	4.9	226	81	3	1034	22	25	21	29	1.99
2882560--2883699	456	2.5	456	81	2	1309	23	25	21	29	1.99
2883872--2884279	208	2.0	207	93	1	701	48	21	5	25	1.70
2888681--2889042	182	2.0	181	100	0	715	32	14	14	38	1.86
2892414--2892479	31	2.1	32	94	2	116	42	10	6	40	1.64
2895637--2896688	228	4.6	227	81	3	1024	22	25	21	30	1.99
2895550--2896689	456	2.5	456	81	2	1309	23	25	21	29	1.99
2898304--2898358	24	2.3	23	77	17	51	52	3	0	43	1.18
2903391--2903426	19	1.9	19	88	5	56	52	0	2	44	1.15
2904349--2904425	34	2.3	34	90	4	120	25	9	37	27	1.86
2904361--2904462	34	3.0	34	82	1	114	26	9	32	31	1.89
2905039--2905065	2	13.5	2	100	0	54	51	0	0	48	1.00
2907689--2907737	20	2.5	20	86	0	62	36	16	10	36	1.82
2907770--2907807	20	1.9	20	94	0	67	34	18	7	39	1.80
2910899--2910933	2	17.5	2	100	0	70	48	0	0	51	1.00
2911009--2911033	3	8.3	3	100	0	50	0	32	0	68	0.90
2914179--2914205	2	13.5	2	100	0	54	48	0	0	51	1.00
2917452--2917844	134	2.9	133	78	4	414	41	14	9	33	1.79
2921202--2921235	17	2.0	17	88	11	52	35	0	5	58	1.22
2925453--2925480	13	2.2	13	100	0	56	46	14	0	39	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2958674--2958711	20	2.0	20	89	5	60	34	13	13	39	1.83
2966872--2966903	17	1.9	16	93	6	55	43	0	6	50	1.27
2966877--2966911	17	2.1	17	88	0	52	45	0	5	48	1.26
2967864--2967915	26	2.0	26	92	0	86	25	15	15	44	1.85
2968628--2968665	20	2.0	20	89	5	60	50	21	0	28	1.49
2970130--2970172	11	3.9	11	84	0	59	44	18	16	20	1.87
2989640--2989751	28	4.0	28	98	0	215	60	15	7	16	1.56
3000710--3000767	30	2.0	30	82	3	73	32	12	6	48	1.67
3007679--3007730	25	2.1	25	82	7	61	23	3	3	69	1.22
3013030--3013069	13	3.1	13	92	0	71	37	0	2	60	1.11
3013148--3013192	23	2.0	23	82	8	56	22	0	0	77	0.76
3013584--3013613	15	1.9	16	93	6	53	40	0	0	60	0.97
3017669--3017752	33	2.6	30	76	14	87	36	1	1	60	1.12
3017701--3017747	11	4.3	11	94	0	85	25	0	2	72	0.96
3017693--3017747	22	2.5	22	91	5	85	29	0	1	69	0.99
3017849--3018130	139	2.0	138	84	4	363	38	10	13	37	1.79
3019229--3019294	32	2.0	33	82	2	80	43	1	6	48	1.36
3025632--3025656	11	2.3	11	100	0	50	24	0	0	76	0.80
3025765--3026013	138	1.8	137	88	1	383	35	10	14	38	1.82
3025765--3026043	138	2.1	136	85	4	375	37	10	14	37	1.81
3025760--3026043	137	2.1	138	84	5	378	38	10	14	36	1.81
3026030--3026463	214	2.0	214	92	0	733	38	15	11	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3029815--3030049	79	3.0	79	99	0	461	37	20	16	26	1.93
3039020--3039063	18	2.4	18	85	7	54	54	6	18	20	1.66
3042079--3042230	56	2.7	56	87	4	198	33	36	5	25	1.78
3042218--3042243	7	3.7	7	100	0	52	46	38	0	15	1.46
3048508--3048548	21	2.0	21	95	0	73	26	26	17	29	1.97
3051666--3051700	10	3.4	10	96	4	61	31	0	0	68	0.90
3051668--3051700	11	3.1	11	91	4	50	30	0	0	69	0.88
3075315--3075365	24	2.1	25	81	3	59	35	1	5	56	1.35
3084723--3084777	26	2.2	26	80	9	69	76	3	3	16	1.07
3097310--3097381	36	2.0	36	86	5	101	18	16	45	19	1.85
3097316--3097390	36	2.1	36	82	5	89	21	17	44	17	1.87
3098086--3098130	6	7.5	6	92	0	54	11	6	66	15	1.42
3101453--3101491	15	2.8	14	85	11	53	46	0	0	53	1.00
3113287--3113316	15	2.0	15	93	0	51	10	0	56	33	1.32
3125121--3125154	13	2.5	14	85	4	52	52	0	0	47	1.00
3138739--3138769	14	2.3	14	94	5	55	87	0	0	12	0.55
3140537--3140621	44	1.9	44	90	0	134	14	30	23	31	1.94
3141381--3141433	24	2.2	24	96	3	99	60	0	11	28	1.31
3142066--3142114	19	2.6	19	78	18	57	10	8	18	63	1.50
3143448--3143496	24	2.0	24	92	0	80	16	28	12	42	1.84
3162375--3162434	25	2.4	25	81	8	70	60	3	0	36	1.14
3164772--3164886	42	2.7	43	82	5	137	26	14	19	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3165791--3165865	38	2.0	38	84	5	98	29	14	13	42	1.84
3166866--3166890	12	2.1	12	100	0	50	32	8	16	44	1.76
3167852--3167887	2	18.0	2	94	0	63	0	47	0	52	1.00
3168767--3168802	16	2.2	16	90	5	54	27	0	0	72	0.85
3168760--3168802	17	2.6	16	85	3	59	27	0	0	72	0.85
3169346--3169390	16	2.8	16	82	3	54	68	0	28	2	1.01
3169513--3169557	23	2.0	23	95	4	83	68	0	0	31	0.89
3170620--3170658	16	2.4	17	80	20	55	43	0	5	51	1.24
3174044--3174068	12	2.1	12	100	0	50	40	8	24	28	1.83
3174378--3174422	23	2.0	23	90	0	72	37	8	8	44	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54