genome.fa.s7.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  27  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11368391--11368415	13	1.9	13	100	0	50	44	0	8	48	1.32
11371121--11371589	235	2.0	234	91	0	758	32	19	21	26	1.97
11384107--11384162	29	1.9	29	85	0	76	21	0	32	46	1.52
11392960--11393021	30	2.1	30	87	6	90	29	4	22	43	1.74
11393538--11393609	25	2.9	25	91	4	110	22	26	16	34	1.95
11396299--11396351	28	1.9	27	88	3	79	28	22	18	30	1.98
11396396--11396441	20	2.3	20	88	7	67	45	17	4	32	1.68
11407835--11407976	34	4.1	34	73	3	104	34	19	14	30	1.92
11408389--11408591	73	2.8	74	79	5	236	39	16	18	25	1.91
11411909--11411954	15	3.1	15	84	9	60	23	4	17	54	1.61
11415222--11415267	17	2.6	17	79	6	56	60	0	4	34	1.16
11417672--11417833	43	3.8	42	85	4	173	23	32	18	25	1.97
11417672--11417846	42	4.1	42	85	2	163	24	32	18	25	1.97
11418600--11418657	2	29.0	2	92	0	98	46	0	53	0	1.00
11431099--11431137	11	3.5	11	89	10	62	51	15	0	33	1.44
11431131--11431174	22	2.0	22	91	8	72	38	22	9	29	1.85
11434206--11434289	37	2.3	37	81	6	107	32	22	8	36	1.84
11434304--11434375	30	2.4	30	75	11	85	38	23	12	25	1.90
11434357--11434430	27	2.7	27	85	10	89	36	24	13	25	1.92
11452946--11452982	2	18.5	2	100	0	74	48	0	0	51	1.00
11465738--11465785	2	24.0	2	100	0	96	50	0	0	50	1.00
11470658--11470730	25	2.9	25	78	8	85	17	27	17	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11478598--11478658	27	2.3	27	88	0	86	42	19	16	21	1.89
11478906--11478950	22	2.1	21	83	4	54	26	20	20	33	1.97
11481496--11481534	20	2.0	20	89	0	60	35	7	7	48	1.61
11483921--11483953	15	2.2	15	89	10	50	3	18	12	66	1.36
11485996--11486097	38	2.6	40	76	3	118	21	36	17	24	1.95
11487431--11487485	28	2.0	28	82	7	67	29	23	23	23	1.99
11490051--11490083	15	2.2	15	89	10	50	6	18	9	66	1.40
11490232--11490305	36	2.1	36	100	0	148	35	13	18	32	1.90
11493571--11493625	24	2.4	22	82	17	67	21	0	5	72	1.04
11494519--11494549	14	2.2	14	94	0	53	45	16	12	25	1.83
11496015--11496097	41	2.0	41	85	0	112	31	2	22	43	1.66
11496360--11496406	18	2.5	19	75	6	51	63	0	0	36	0.94
11499264--11499316	23	2.5	22	77	19	58	50	1	1	45	1.23
11503776--11503833	9	6.4	9	74	20	50	75	0	1	22	0.89
11505767--11505795	15	2.0	15	93	6	51	0	31	0	68	0.89
11506303--11506361	30	2.0	30	89	0	91	23	5	28	42	1.75
11512186--11512225	13	3.1	13	96	0	71	52	0	2	45	1.14
11512239--11512471	35	6.7	35	80	3	238	42	12	6	38	1.68
11512268--11512478	71	3.0	70	82	4	266	44	12	6	36	1.67
11512275--11512478	107	1.9	103	85	3	273	45	12	5	37	1.65
11520306--11520462	73	2.2	73	84	0	206	21	15	21	42	1.89
11520306--11520495	73	2.6	73	78	3	195	20	17	20	42	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11521138--11521184	20	2.3	20	92	0	76	36	14	17	31	1.90
11521401--11521458	25	2.3	25	96	0	107	22	39	0	37	1.54
11528859--11528929	35	2.0	35	86	0	97	30	28	14	26	1.95
11529412--11529568	73	2.2	73	86	0	215	20	19	20	40	1.92
11529412--11529592	73	2.5	73	82	1	202	20	19	20	39	1.93
11537311--11537337	14	1.9	14	100	0	54	81	0	3	14	0.82
11539735--11539776	21	2.0	21	95	0	75	19	26	19	35	1.95
11557424--11557533	37	3.0	37	80	0	112	27	10	36	25	1.89
11561867--11561898	15	2.1	15	100	0	64	28	6	34	31	1.82
11574108--11574224	42	2.8	42	93	0	189	20	17	35	26	1.94
11574563--11574650	39	2.3	39	89	0	131	25	22	21	30	1.99
11581473--11581511	19	2.0	19	90	5	60	38	10	7	43	1.67
11582889--11582913	12	2.1	12	100	0	50	52	0	24	24	1.48
11583886--11583918	15	2.2	15	89	10	50	3	18	12	66	1.36
11594662--11594715	27	2.0	27	92	0	90	51	1	0	46	1.11
11594741--11594781	22	2.0	20	85	9	55	60	0	0	39	0.96
11594752--11594793	15	2.9	15	89	3	50	57	0	2	40	1.12
11594760--11594802	15	2.9	15	86	3	61	53	0	2	44	1.13
11594888--11594944	27	2.2	26	84	12	73	50	5	0	43	1.24
11607231--11607292	30	2.1	30	90	0	97	30	4	22	41	1.74
11610087--11610175	37	2.4	36	85	7	108	33	23	10	32	1.88
11610148--11610293	30	5.0	29	74	7	125	36	23	8	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11610764--11610831	21	3.2	20	73	6	64	20	11	14	52	1.73
11610764--11610858	43	2.2	43	85	9	124	17	13	15	52	1.74
11615746--11615787	6	7.0	6	86	8	50	35	2	0	61	1.09
11616754--11616794	10	3.5	12	77	16	50	9	4	4	80	1.00
11617325--11618027	50	14.1	51	84	6	836	39	23	8	29	1.84
11617325--11618027	299	2.4	293	85	6	898	39	23	8	29	1.84
11631097--11631133	16	2.4	16	82	8	51	32	0	0	67	0.91
11632195--11632237	19	2.4	17	78	14	50	20	11	2	65	1.36
11632207--11632252	24	1.9	24	90	0	74	19	10	2	67	1.31
11632200--11632244	19	2.4	19	81	7	56	20	11	2	66	1.33
11633105--11633152	20	2.3	21	82	3	62	50	0	8	41	1.33
11635248--11635300	28	1.9	28	84	3	72	28	22	20	28	1.99
11639369--11639414	20	2.3	20	88	0	65	30	2	23	43	1.66
11639378--11639415	20	1.9	20	94	0	67	31	0	28	39	1.57
11640641--11640667	13	2.1	13	100	0	54	44	0	7	48	1.31
11645991--11646548	280	2.0	279	99	0	1100	40	12	10	36	1.78
11649404--11649443	20	2.0	20	95	0	71	37	10	7	45	1.66
11661293--11661324	12	2.7	12	100	0	64	53	6	15	25	1.65
11661439--11661476	3	12.7	3	100	0	76	0	34	0	65	0.93
11662228--11662351	42	3.0	42	87	0	176	23	22	31	22	1.98
11674733--11674781	5	9.8	5	90	0	71	40	20	0	38	1.53
11674744--11674783	20	2.0	20	100	0	80	40	15	0	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11674820--11674865	15	3.1	15	84	12	67	56	19	2	21	1.52
11676211--11676235	13	1.9	13	100	0	50	48	8	0	44	1.32
11676488--11676512	13	1.9	13	100	0	50	48	8	0	44	1.32
11678373--11678409	16	2.3	16	100	0	74	51	21	5	21	1.68
11681500--11681537	2	19.0	2	100	0	76	50	0	0	50	1.00
11683075--11683107	15	2.1	16	88	5	50	51	0	0	48	1.00
11683152--11683208	27	2.2	25	87	6	78	54	1	0	43	1.10
11685275--11685330	22	2.4	23	85	5	69	55	1	0	42	1.10
11685305--11685359	27	2.0	28	89	3	85	52	1	0	45	1.11
11685870--11685925	22	2.4	23	85	5	69	55	1	0	42	1.10
11685900--11685954	27	2.0	28	89	3	85	52	1	0	45	1.11
11686058--11686091	17	2.0	17	88	0	50	47	5	0	47	1.26
11689372--11689457	28	3.1	28	84	0	118	26	6	16	50	1.70
11690837--11690875	18	2.1	18	85	4	51	46	7	0	46	1.31
11692035--11692088	28	2.0	27	88	3	81	29	22	18	29	1.97
11699056--11699453	55	7.3	55	77	4	176	38	17	11	33	1.85
11699122--11699455	82	4.1	82	80	3	323	38	17	11	33	1.85
11699053--11699471	27	15.3	27	74	6	270	38	17	11	32	1.86
11699053--11699471	137	3.1	135	76	5	405	38	17	11	32	1.86
11703737--11703768	4	8.0	4	100	0	64	50	25	0	25	1.50
11703840--11703877	2	20.5	2	84	15	55	50	0	0	50	1.00
11714394--11714432	19	2.1	19	85	9	53	53	5	0	41	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11725327--11725384	25	2.3	25	76	5	64	46	10	12	31	1.74
11725389--11725415	9	3.0	9	100	0	54	11	0	0	88	0.50
11729896--11729960	25	2.6	24	78	9	76	40	7	16	35	1.78
11729958--11729997	9	4.4	9	93	0	62	10	5	0	85	0.75
11734558--11734602	2	23.0	2	86	13	67	48	2	0	48	1.13
11737002--11737324	161	2.0	161	95	0	574	35	17	16	30	1.92
11739654--11739691	6	6.5	6	93	3	60	84	0	15	0	0.63
11742708--11742749	19	2.2	19	91	0	66	21	30	4	42	1.73
11754769--11754819	20	2.3	23	80	12	63	56	7	23	11	1.61
11756386--11756443	22	2.7	22	83	2	64	53	20	0	25	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54