genome.fa.s7.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  36  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14487539--14487567	8	3.8	8	95	4	51	20	0	0	79	0.74
14490867--14491100	113	2.1	113	92	1	389	34	16	10	38	1.83
14494330--14494736	60	6.9	60	84	2	450	24	32	18	24	1.97
14495356--14495499	58	2.5	58	85	6	193	2	34	2	59	1.26
14495406--14495443	12	2.9	13	80	11	51	0	28	0	71	0.87
14495464--14495525	20	2.9	21	80	9	72	0	30	1	67	1.00
14495532--14495579	18	2.5	20	86	10	64	2	31	0	66	1.03
14498077--14498237	37	4.2	37	83	10	216	25	37	8	28	1.86
14498091--14498237	79	1.9	79	89	2	233	25	38	7	27	1.83
14499238--14499378	60	2.3	61	90	3	221	28	31	12	27	1.93
14500019--14500062	16	2.7	16	92	3	70	0	22	0	77	0.77
14500025--14500132	13	8.0	14	71	17	50	0	32	1	64	1.10
14500008--14500064	23	2.4	23	80	8	71	1	28	0	70	0.98
14500019--14500130	16	7.1	16	71	12	56	0	31	1	66	1.08
14500095--14500137	13	3.2	14	81	18	56	0	34	0	65	0.93
14500005--14500340	68	4.9	70	81	10	306	1	34	4	59	1.26
14500224--14500255	16	1.9	17	93	6	57	0	21	0	78	0.76
14500362--14500394	12	2.8	12	95	0	57	0	36	0	63	0.95
14500354--14500411	23	2.6	22	84	10	73	0	32	0	67	0.91
14500378--14500415	18	2.1	19	90	5	60	0	23	0	76	0.79
14502273--14502311	12	3.2	12	85	0	51	41	0	10	48	1.37
14521452--14521578	37	3.4	37	76	4	112	44	17	17	20	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14521508--14521630	37	3.3	37	76	4	97	42	17	20	20	1.89
14528959--14529110	81	1.9	81	91	2	252	30	9	23	36	1.87
14532576--14532639	34	1.9	33	87	3	92	21	3	10	64	1.40
14543799--14543842	17	2.6	17	81	0	52	72	0	4	22	1.02
14545282--14545330	18	2.7	18	83	0	71	69	0	2	28	1.00
14545712--14545929	68	3.2	68	92	0	364	33	15	42	8	1.78
14546478--14546521	2	22.0	2	85	0	61	50	6	0	43	1.29
14546458--14546521	18	3.4	18	81	12	67	50	6	1	42	1.37
14546476--14546521	20	2.3	20	92	0	74	52	6	0	41	1.27
14546482--14546521	16	2.5	16	95	0	71	50	7	0	42	1.30
14546918--14546959	18	2.4	18	80	4	50	71	0	2	26	0.98
14547022--14547111	15	5.8	16	68	15	55	68	1	5	24	1.17
14547056--14547085	12	2.4	13	94	5	53	66	0	3	30	1.07
14547068--14547113	18	2.5	19	77	19	53	71	2	0	26	0.97
14547075--14547118	21	2.0	23	83	16	58	68	2	2	27	1.14
14549021--14549050	14	2.1	14	93	0	51	36	16	6	40	1.75
14552418--14552540	51	2.4	51	94	0	219	41	17	22	18	1.90
14555450--14555480	2	15.5	2	93	0	53	51	0	3	45	1.17
14562976--14563054	2	39.5	2	94	0	131	46	1	2	49	1.23
14565716--14565949	60	3.9	60	83	1	254	22	31	18	26	1.97
14565716--14565950	120	2.0	120	82	1	292	22	31	18	26	1.97
14566467--14566802	69	5.0	68	79	9	309	2	33	3	59	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14566455--14566734	138	2.0	137	84	7	363	2	32	3	60	1.28
14566698--14566741	18	2.5	17	82	10	52	0	31	0	68	0.90
14566468--14566904	69	6.4	66	77	12	256	3	35	4	57	1.35
14566708--14566856	67	2.3	65	80	12	164	2	34	4	59	1.30
14566638--14566878	134	1.8	130	85	10	337	2	34	4	58	1.29
14572882--14573119	60	4.0	60	85	3	275	21	32	18	27	1.97
14572882--14573119	120	2.0	121	85	5	322	21	32	18	27	1.97
14573709--14573767	13	4.8	12	76	10	57	0	35	0	64	0.94
14573788--14573958	17	10.2	17	66	15	54	2	33	3	60	1.26
14573731--14574052	67	4.8	67	73	15	242	3	36	4	55	1.39
14573850--14573896	6	7.8	6	76	9	51	2	29	0	68	1.02
14573850--14573894	18	2.5	18	86	10	65	2	28	0	68	1.01
14573658--14574034	134	2.8	131	81	9	388	2	35	3	57	1.32
14573914--14573961	18	2.6	17	78	12	51	2	31	0	66	1.03
14573984--14574022	18	2.2	17	86	4	51	5	30	0	64	1.15
14573772--14574053	134	2.1	133	86	2	395	3	35	4	55	1.40
14573788--14574057	67	4.0	67	84	2	346	3	35	4	56	1.37
14574663--14574728	32	2.1	32	88	0	96	31	16	4	46	1.67
14575039--14575087	24	2.0	24	100	0	98	36	12	10	40	1.77
14577867--14577906	21	1.9	21	84	0	53	17	30	0	52	1.45
14578727--14579669	451	2.1	450	87	3	1355	40	17	16	26	1.90
14579540--14579800	131	2.0	130	95	0	459	41	18	14	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14579090--14580250	581	2.0	580	88	3	1728	41	16	15	26	1.88
14588264--14588301	19	2.0	19	89	0	58	42	31	0	26	1.56
14588637--14588677	20	2.0	20	95	0	73	41	0	14	43	1.45
14588646--14588695	25	2.0	25	84	7	66	44	0	20	36	1.52
14591880--14591927	25	1.9	25	87	8	71	75	0	8	16	1.04
14603528--14603558	12	2.5	13	94	5	55	67	0	3	29	1.06
14607163--14607199	2	19.0	2	94	5	67	48	0	0	51	1.00
14607388--14607494	43	2.5	42	86	3	144	38	0	18	42	1.57
14613453--14613499	24	2.0	24	95	0	85	42	8	14	34	1.77
14619417--14619696	68	4.1	68	81	3	296	34	21	10	33	1.88
14640720--14640755	5	7.2	5	87	0	54	36	16	2	44	1.63
14645483--14645623	52	2.6	54	78	9	153	25	37	15	21	1.93
14651498--14651534	17	2.2	17	90	9	58	29	0	0	70	0.88
14654259--14654299	20	2.0	20	90	0	64	12	34	9	43	1.75
14657860--14657902	22	2.0	22	95	0	77	27	27	11	32	1.92
14658193--14658224	2	16.0	2	100	0	64	50	0	0	50	1.00
14658304--14658432	36	3.6	36	87	0	168	28	46	12	12	1.78
14658603--14658635	2	16.5	2	100	0	66	51	0	0	48	1.00
14664159--14664274	40	2.9	40	86	1	160	35	21	7	35	1.82
14665476--14665514	20	2.0	20	84	0	51	35	15	12	35	1.86
14671640--14671692	27	1.9	27	82	17	65	32	24	20	22	1.98
14672818--14672842	13	1.9	13	100	0	50	36	0	16	48	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14675980--14676062	36	2.3	36	87	2	112	32	21	10	34	1.88
14676004--14676080	36	2.2	36	85	2	102	35	24	10	29	1.89
14686738--14686831	45	2.1	45	84	7	120	44	4	4	46	1.42
14693883--14693942	31	2.0	30	86	3	84	15	10	46	28	1.77
14701735--14701789	24	2.3	24	84	6	67	9	3	20	67	1.34
14701733--14701790	25	2.4	23	77	11	62	8	3	18	68	1.30
14702352--14703488	59	19.0	59	86	3	1499	36	20	11	31	1.88
14702352--14703469	181	6.2	177	91	2	1470	36	20	11	31	1.88
14719457--14719517	24	2.5	24	78	5	68	8	3	19	68	1.29
14726911--14726949	4	9.8	4	100	0	78	25	0	23	51	1.49
14733471--14733516	21	2.2	21	84	0	56	39	6	19	34	1.78
14737787--14737845	31	1.9	31	86	3	84	45	3	10	40	1.54
14738896--14739078	35	5.2	35	85	5	242	43	14	7	34	1.73
14738896--14739086	71	2.7	70	84	4	249	43	14	7	35	1.73
14754110--14754256	61	2.4	61	83	6	183	33	21	21	24	1.97
14755270--14755294	2	12.5	2	100	0	50	0	48	0	52	1.00
14759784--14759809	5	5.2	5	100	0	52	23	0	0	76	0.78
14770768--14770846	40	2.0	40	92	5	133	18	22	24	34	1.97
14778694--14778746	17	3.1	17	78	7	54	71	11	0	16	1.13
14779575--14779630	28	2.0	28	86	6	78	30	21	17	30	1.96
14786394--14786447	20	2.8	19	80	8	56	57	12	0	29	1.36
14786830--14786869	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14789178--14789342	78	2.1	77	92	3	269	41	7	12	38	1.72
14795069--14795110	21	2.0	21	81	9	50	40	14	11	33	1.82
14796220--14796262	22	2.0	22	81	9	52	30	16	32	20	1.95
14796429--14796646	58	3.8	58	82	4	246	38	17	17	26	1.92
14805062--14805110	21	2.3	22	89	7	82	34	18	20	26	1.95
14806306--14806347	22	1.9	22	85	0	57	42	0	4	52	1.22
14817464--14817493	15	1.9	16	93	6	53	20	6	16	56	1.62
14818048--14818105	25	2.3	26	88	8	86	39	0	5	55	1.22
14818389--14818459	36	2.0	36	88	5	108	30	5	12	50	1.63
14832430--14832489	25	2.4	25	88	0	84	26	16	31	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54