genome.fa.s7.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  8  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3750222--3750395	84	2.1	84	85	1	242	29	21	10	37	1.87
3753660--3753702	15	2.7	16	82	17	54	53	4	0	41	1.21
3753068--3753706	344	1.9	342	87	4	955	41	7	6	45	1.57
3755585--3755639	24	2.3	24	100	0	110	36	0	16	47	1.47
3761151--3761215	32	2.1	32	97	2	123	24	27	18	29	1.98
3765896--3765942	20	2.3	20	88	0	67	25	2	6	65	1.27
3772761--3772830	3	24.7	3	75	16	69	25	4	0	70	1.06
3772761--3772825	30	2.1	31	88	2	96	26	3	0	70	1.01
3772766--3772823	28	2.2	28	87	9	86	25	3	0	70	1.03
3774325--3774367	20	2.2	20	86	0	59	23	2	6	67	1.27
3781523--3781579	30	1.9	30	96	0	105	21	21	22	35	1.96
3791919--3792114	39	5.0	39	79	2	205	31	5	18	44	1.73
3793671--3793836	84	2.0	84	90	1	262	31	22	8	37	1.84
3801853--3801917	32	2.1	32	97	2	123	24	27	18	29	1.98
3817564--3817598	19	1.9	19	88	11	56	40	8	11	40	1.72
3859807--3859852	23	2.0	23	86	4	65	60	0	6	32	1.22
3859996--3860042	19	2.3	20	79	17	53	40	2	2	55	1.24
3860671--3860864	59	3.3	59	96	0	343	30	18	16	34	1.93
3866433--3866494	31	2.0	31	100	0	124	22	16	25	35	1.94
3866507--3866574	34	2.0	34	94	0	118	17	17	7	57	1.62
3870334--3870370	2	19.0	2	94	5	67	48	0	0	51	1.00
3871628--3871665	8	4.8	8	93	0	67	47	0	10	42	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3872347--3872433	33	2.6	33	83	7	95	31	4	1	63	1.22
3955897--3955951	19	2.9	19	97	0	101	16	9	27	47	1.76
3959846--3959969	53	2.3	53	82	9	155	20	17	20	41	1.91
3963928--3964127	65	3.0	65	88	5	260	44	8	15	32	1.76
3963958--3964156	66	3.0	65	89	5	276	45	7	17	30	1.76
3980569--3980648	31	2.6	30	79	14	92	51	0	2	46	1.14
3998638--3998700	31	2.2	28	86	11	83	22	23	12	41	1.88
3998648--3998709	31	2.0	31	100	0	124	25	22	16	35	1.94
4003492--4003648	74	2.1	75	86	3	219	40	17	20	21	1.92
4015924--4015954	2	15.5	2	100	0	62	51	0	0	48	1.00
4016325--4016359	2	18.0	2	94	5	63	51	0	0	48	1.00
4018636--4018685	25	2.0	26	96	4	93	58	0	0	42	0.98
4021289--4021349	12	5.3	11	78	20	54	67	3	27	1	1.16
4021289--4021342	22	2.5	22	91	8	85	68	3	27	0	1.06
4021648--4021673	3	8.7	3	100	0	52	65	0	34	0	0.93
4021681--4021720	3	13.3	3	83	0	53	40	0	60	0	0.97
4021681--4021720	12	3.3	12	89	0	62	40	0	60	0	0.97
4028907--4028964	29	2.0	30	93	3	100	58	12	13	15	1.63
4032812--4032840	5	6.0	5	92	8	51	37	0	0	62	0.96
4035890--4035918	2	15.0	2	92	7	51	51	0	0	48	1.00
4052762--4052794	13	2.4	14	90	5	50	18	3	0	78	0.87
4059621--4059662	17	2.5	17	80	3	50	14	21	7	57	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4066563--4066609	25	2.0	23	84	12	60	29	27	8	34	1.87
4066570--4066624	25	2.2	25	90	0	83	23	27	12	36	1.91
4067267--4067298	2	16.0	2	93	0	55	46	0	3	50	1.17
4068397--4068453	29	1.9	30	96	3	107	31	21	10	36	1.87
4071721--4071745	13	1.9	13	100	0	50	64	8	0	28	1.22
4083622--4083661	21	1.9	21	89	0	62	47	2	45	5	1.38
4087258--4087355	24	4.1	24	76	3	74	47	19	12	20	1.81
4099491--4099591	51	2.0	51	98	0	193	28	15	24	30	1.96
4105031--4105070	20	2.0	20	85	0	53	27	2	0	70	1.01
4105076--4105117	14	3.0	15	80	16	54	40	0	0	59	0.97
4109632--4109738	54	2.0	53	92	1	178	34	12	18	34	1.88
4120348--4120392	23	2.0	23	82	8	56	42	0	0	57	0.98
4120672--4120707	2	18.0	2	100	0	72	50	0	0	50	1.00
4126304--4126373	36	2.0	35	94	5	124	44	11	2	41	1.55
4141885--4141918	2	17.0	2	100	0	68	50	0	0	50	1.00
4148711--4148854	73	2.0	73	97	0	270	31	16	20	30	1.95
4156355--4156398	20	2.3	18	84	7	61	59	0	0	40	0.98
4160365--4160421	27	2.1	28	86	3	80	22	1	19	56	1.51
4163111--4163218	55	2.0	55	90	0	171	29	12	12	45	1.79
4186221--4186255	17	2.1	17	89	10	54	62	2	0	34	1.10
4187979--4188240	87	3.0	87	96	0	461	24	17	31	26	1.97
4194042--4194074	13	2.7	13	90	9	52	48	0	9	42	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4194080--4194112	11	3.2	11	83	16	52	78	0	0	21	0.75
4201867--4201906	20	2.0	21	85	5	55	30	17	15	37	1.90
4202127--4202159	17	1.9	17	88	11	50	72	0	24	3	0.98
4202639--4202773	61	2.2	63	86	2	193	37	12	11	38	1.79
4202804--4202962	82	2.0	81	93	1	266	34	12	16	35	1.86
4204480--4204642	90	1.8	89	85	1	227	21	37	17	23	1.94
4205594--4205662	35	2.0	35	88	5	104	30	0	5	63	1.17
4210298--4210341	6	7.3	6	92	0	70	50	0	29	20	1.49
4211708--4211747	16	2.5	16	100	0	80	40	10	12	37	1.77
4219052--4219089	18	2.1	19	85	9	53	23	23	7	44	1.79
4229334--4229582	125	2.0	125	90	1	392	26	14	27	31	1.94
4242544--4242736	63	3.0	64	84	8	234	39	5	8	46	1.58
4242781--4242822	22	1.9	22	85	9	59	57	4	0	38	1.20
4250167--4250395	126	1.8	126	79	3	264	39	10	13	36	1.80
4252770--4252813	2	22.5	2	90	4	72	50	2	0	47	1.13
4264924--4264964	20	2.0	20	100	0	82	14	14	4	65	1.42
4269122--4269705	293	2.0	293	99	0	1159	32	14	15	37	1.88
4269699--4269781	2	43.5	2	81	13	104	49	1	0	49	1.08
4274952--4274987	2	18.0	2	94	0	63	50	2	0	47	1.15
4275493--4275529	2	18.5	2	94	0	65	48	0	2	48	1.15
4279129--4279178	24	2.1	24	84	0	64	38	14	8	40	1.75
4291664--4291713	4	12.2	4	84	16	59	76	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4291664--4291726	9	7.1	9	85	7	67	79	0	0	20	0.73
4291664--4291728	13	4.8	13	75	5	58	80	0	0	20	0.72
4297078--4297120	21	2.0	21	100	0	86	41	16	9	32	1.80
4305403--4305443	20	2.0	21	85	9	57	41	2	7	48	1.44
4307466--4307499	2	17.0	2	100	0	68	50	0	0	50	1.00
4318850--4318922	36	2.0	37	86	7	105	43	10	6	38	1.67
4320103--4320405	120	2.6	118	84	6	366	30	15	7	46	1.74
4345697--4345723	6	4.5	6	100	0	54	0	29	0	70	0.88
4360351--4360398	14	3.5	15	78	13	50	14	47	2	35	1.56
4377278--4377333	26	2.3	25	80	19	66	33	1	1	62	1.16
4377993--4378113	63	1.9	63	90	6	192	45	12	5	36	1.66
4379672--4380004	66	5.0	66	88	0	477	24	27	12	35	1.92
4381130--4381230	48	2.1	48	88	1	150	17	27	13	40	1.88
4382646--4382858	13	17.0	12	67	20	59	65	0	1	32	1.07
4382646--4382713	27	2.6	25	79	9	73	70	0	0	29	0.87
4382655--4382744	21	4.1	21	69	18	67	70	0	0	30	0.88
4382652--4382889	32	7.5	31	73	16	163	63	1	1	34	1.13
4382688--4382731	11	4.1	11	76	5	54	75	0	0	25	0.81
4382655--4382864	33	6.4	34	76	18	214	64	0	1	32	1.08
4382658--4382741	26	3.4	25	76	15	84	67	0	0	32	0.91
4382676--4382820	11	13.4	11	67	15	52	64	0	1	33	1.07
4382682--4382775	26	3.6	26	75	5	84	65	1	1	31	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4382772--4382860	20	4.2	20	65	18	63	62	0	3	33	1.11
4382675--4382852	97	1.9	94	83	8	234	64	0	2	32	1.10
4382655--4382864	65	3.2	65	90	6	304	64	0	1	32	1.08
4384277--4384302	13	2.0	13	100	0	52	7	7	23	61	1.49
4385317--4385367	25	2.0	25	92	0	84	31	17	15	35	1.92
4395671--4395806	67	2.0	67	94	0	236	34	22	9	33	1.87
4395863--4395954	2	45.5	2	93	2	157	48	2	0	47	1.13
4406251--4406290	2	20.0	2	100	0	80	50	0	0	50	1.00
4409135--4409184	23	2.2	23	100	0	100	46	14	4	36	1.63
4410641--4410719	29	2.6	31	82	5	101	36	2	5	55	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54