genome.fa.s7.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  22  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9641897--9642241	162	2.1	162	84	3	444	16	39	20	23	1.92
9642698--9642777	36	2.2	36	86	6	110	27	0	10	62	1.27
9642919--9642977	31	1.9	31	89	0	91	40	11	18	28	1.86
9643930--9644029	27	3.6	27	68	28	84	38	3	11	48	1.54
9647613--9647650	15	2.6	15	87	4	51	21	23	2	52	1.59
9647909--9648074	77	2.1	78	84	3	219	38	10	9	41	1.72
9651779--9651816	19	2.0	19	94	0	67	42	28	0	28	1.56
9654413--9654476	30	2.1	31	86	11	89	37	3	3	56	1.31
9654811--9654856	5	9.8	5	88	4	53	67	2	0	30	1.03
9655698--9655732	15	2.4	14	90	9	52	74	0	0	25	0.82
9655767--9655849	25	3.1	26	75	21	73	71	0	3	25	1.02
9671049--9671083	3	11.7	3	100	0	70	0	31	0	68	0.90
9672635--9672673	20	2.0	20	85	10	53	33	2	12	51	1.54
9674084--9674128	22	2.0	22	86	0	63	37	4	0	57	1.19
9693240--9693290	2	25.5	2	83	0	57	45	3	5	45	1.46
9693250--9693299	12	4.2	12	81	0	64	42	4	8	46	1.52
9693250--9693295	24	1.9	24	95	0	83	41	4	8	45	1.55
9704537--9704604	25	2.7	25	86	0	100	54	2	33	8	1.47
9710813--9710849	15	2.6	15	83	8	51	43	2	2	51	1.30
9711056--9711144	35	2.6	34	84	10	110	25	0	13	60	1.33
9711948--9712003	25	2.3	24	90	3	85	66	1	7	25	1.27
9712372--9712416	23	2.0	21	87	8	63	20	8	6	64	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9720022--9720053	9	3.6	9	100	0	64	0	0	9	90	0.45
9722129--9722197	35	2.0	35	82	0	84	39	15	17	27	1.90
9723840--9724074	39	6.0	39	79	3	177	38	17	20	22	1.93
9723848--9724069	78	2.8	76	78	5	237	39	18	21	21	1.92
9736963--9737001	5	7.6	5	82	5	51	2	17	2	76	1.01
9736962--9737001	16	2.6	16	88	4	55	5	17	2	75	1.10
9737551--9737591	2	22.5	2	81	18	54	51	0	0	48	1.00
9737538--9737591	19	3.0	17	84	12	65	50	1	1	46	1.23
9754657--9754693	16	2.2	18	90	9	60	75	0	5	18	0.99
9758908--9758989	31	2.6	31	94	0	128	59	1	4	34	1.26
9758897--9758989	31	2.9	33	90	3	113	60	1	4	34	1.24
9759926--9760012	31	2.8	31	83	0	111	33	6	12	47	1.68
9766383--9766587	83	2.5	83	91	0	329	36	8	9	45	1.67
9766767--9766828	31	2.0	31	96	0	115	43	19	3	33	1.67
9771492--9771525	2	17.5	2	93	6	61	50	0	0	50	1.00
9772566--9772595	11	2.6	11	94	5	51	80	3	0	16	0.85
9774383--9774456	27	2.7	27	83	4	78	33	22	18	24	1.97
9776190--9776229	20	2.0	20	90	0	62	37	20	5	37	1.74
9780712--9780850	35	4.1	35	69	9	106	29	10	24	35	1.89
9783243--9783267	13	1.9	13	100	0	50	76	0	0	24	0.80
9783874--9783899	5	5.2	5	100	0	52	80	19	0	0	0.71
9786436--9786473	20	1.9	20	88	0	58	31	10	23	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9793521--9793563	15	2.6	16	82	14	52	62	0	25	11	1.29
9799006--9799046	2	20.5	2	100	0	82	51	0	0	48	1.00
9799678--9799710	15	2.2	15	89	10	50	39	0	3	57	1.14
9800693--9800755	16	4.1	16	80	12	69	79	0	20	0	0.73
9800693--9800755	15	4.1	15	78	10	65	79	0	20	0	0.73
9800704--9800766	21	3.0	22	80	15	78	79	0	20	0	0.73
9800704--9800751	24	2.0	24	88	4	71	83	0	16	0	0.65
9800700--9800768	18	3.5	20	86	13	83	76	0	23	0	0.78
9800835--9800864	15	2.0	15	93	0	51	76	0	23	0	0.78
9800839--9800874	11	3.2	12	84	15	58	77	0	22	0	0.76
9800965--9801006	19	2.2	18	91	8	66	66	0	30	2	1.04
9800970--9801018	19	2.5	20	80	9	57	69	0	28	2	1.00
9804921--9805098	60	3.0	60	83	1	198	26	15	32	25	1.95
9806505--9806540	18	2.0	18	94	0	63	30	13	11	44	1.79
9812600--9812626	14	1.9	14	100	0	54	59	11	0	29	1.32
9816380--9816413	14	2.4	15	100	0	54	58	5	0	35	1.22
9825562--9825634	27	2.7	27	95	0	137	46	0	12	41	1.41
9825979--9826033	26	2.1	26	83	6	67	43	0	1	54	1.10
9838724--9838762	20	2.0	19	85	5	51	35	7	2	53	1.43
9840026--9840156	50	2.6	52	82	4	167	19	41	12	27	1.87
9840630--9840664	11	3.0	12	83	8	54	20	0	0	80	0.72
9854033--9854148	61	1.9	61	85	1	162	31	8	18	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9854262--9854345	22	3.9	22	72	7	64	23	13	21	41	1.88
9854456--9854514	22	2.7	22	94	0	109	44	20	8	27	1.80
9855733--9855781	22	2.1	23	85	7	64	38	16	10	34	1.82
9855788--9855889	32	3.4	31	81	10	120	43	10	11	34	1.76
9855796--9855903	28	3.8	28	82	6	110	40	12	11	35	1.79
9856303--9856351	20	2.5	20	96	0	89	53	12	18	16	1.73
9857583--9857619	2	18.5	2	100	0	74	51	0	0	48	1.00
9865233--9865321	36	2.5	35	81	5	99	20	5	25	48	1.71
9865256--9865324	36	1.9	36	90	0	111	18	4	27	49	1.67
9879426--9879469	20	2.1	20	87	8	61	81	2	11	4	0.92
9879441--9879485	9	4.9	9	83	5	54	84	2	6	6	0.85
9879443--9879508	9	6.9	9	72	13	51	80	4	3	12	0.98
9881241--9881283	19	2.3	19	84	4	52	46	13	18	20	1.83
9881305--9881406	37	2.8	37	98	0	195	39	21	19	19	1.93
9881955--9881992	19	2.0	19	89	0	58	31	0	28	39	1.57
9884591--9884629	15	2.6	16	88	8	55	33	2	12	51	1.54
9884666--9884696	5	6.4	5	92	7	55	41	0	19	38	1.51
9884666--9884696	14	2.1	15	94	5	55	41	0	19	38	1.51
9884667--9884706	19	2.1	19	85	0	53	37	2	22	37	1.68
9903340--9903369	11	2.7	11	94	0	51	26	20	20	33	1.97
9904999--9905023	13	1.9	13	100	0	50	48	8	0	44	1.32
9906388--9906425	19	2.0	19	94	0	67	42	28	0	28	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9908663--9908871	89	2.3	89	86	1	285	21	38	13	27	1.90
9909296--9909347	3	17.3	3	95	0	95	34	0	0	65	0.93
9910022--9910092	29	2.4	28	82	15	74	30	0	5	63	1.17
9910174--9910200	12	2.2	12	100	0	54	33	0	25	40	1.56
9910547--9910602	29	1.9	29	82	13	71	33	16	10	39	1.83
9910869--9910923	26	2.1	26	86	0	74	29	12	16	41	1.85
9926267--9926333	34	2.0	33	82	8	82	32	4	10	52	1.56
9929122--9929179	13	4.3	14	74	14	59	60	0	0	39	0.97
9936672--9936827	60	2.6	60	95	0	276	24	14	33	27	1.94
9938139--9938177	19	2.1	18	85	4	51	43	5	35	15	1.69
9938262--9938317	18	3.1	18	87	12	71	66	1	14	17	1.34
9938262--9938317	19	3.1	19	80	12	64	66	1	14	17	1.34
9938560--9938602	2	21.5	2	100	0	86	48	0	0	51	1.00
9938602--9938637	2	18.0	2	100	0	72	0	50	0	50	1.00
9939521--9939581	15	3.9	15	73	26	63	47	0	0	52	1.00
9939539--9939592	26	2.1	26	82	6	65	55	0	0	44	0.99
9940765--9940804	22	1.9	21	85	10	55	47	2	15	35	1.58
9947908--9947947	20	2.0	20	90	0	62	52	12	2	32	1.52
9955342--9955448	55	1.9	55	83	3	135	28	1	36	32	1.68
9955762--9955807	15	3.1	15	87	12	76	17	0	47	34	1.48
9955792--9955856	33	2.0	33	96	0	121	23	6	38	32	1.79
9958396--9958458	30	2.1	30	93	0	108	38	11	19	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9958797--9958824	12	2.3	12	100	0	56	42	14	0	42	1.45
9959188--9959326	40	3.6	39	78	2	145	48	16	4	30	1.65
9966473--9966524	21	2.4	21	87	3	68	23	11	23	42	1.86
9966486--9966553	21	3.2	21	83	4	82	23	8	20	47	1.78
9966567--9966687	23	5.3	23	85	6	149	38	28	8	25	1.85
9966719--9966822	21	4.9	21	74	6	93	44	19	10	25	1.83
9966718--9966802	22	3.9	22	79	3	100	44	18	10	25	1.82
9966793--9966843	20	2.5	21	87	3	68	37	21	13	27	1.91
9972725--9972762	20	2.0	20	84	5	51	47	7	13	31	1.71
9978062--9978252	74	2.6	73	82	10	228	42	17	17	23	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54