genome.fa.s7.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr7
Parameters: 2 7 7 80 10 50 1000
Length:  21614486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   

This is table  25  of  54  ( 6420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10625323--10625470	75	2.0	73	98	1	278	61	2	17	17	1.45
10625578--10625639	12	4.9	12	72	18	54	58	1	0	40	1.08
10625556--10625638	39	2.1	37	82	12	96	60	2	1	36	1.18
10625584--10625636	28	2.0	26	85	7	70	62	1	0	35	1.06
10625636--10625691	24	2.4	23	78	3	67	42	0	1	55	1.10
10625666--10625708	19	2.4	18	81	11	52	51	0	0	48	1.00
10625710--10625738	11	2.5	12	88	11	51	31	0	0	68	0.89
10639854--10640260	218	1.9	219	87	0	609	47	4	10	37	1.59
10640502--10640537	16	2.2	16	90	9	56	41	0	0	58	0.98
10641755--10641874	15	7.9	15	66	17	52	44	1	2	51	1.24
10641750--10641837	23	3.6	23	78	17	79	48	2	2	46	1.27
10641791--10641876	16	5.4	16	73	17	56	43	1	2	53	1.21
10641899--10641956	22	2.6	23	78	8	66	53	3	0	43	1.17
10641941--10641984	15	3.0	15	80	3	54	54	0	2	43	1.12
10641941--10642042	15	7.4	15	67	22	53	50	0	1	47	1.12
10641981--10642041	15	4.3	15	72	16	58	47	0	1	50	1.10
10653285--10653337	19	2.9	19	73	15	58	60	7	0	32	1.25
10654816--10654853	14	2.7	14	92	8	60	47	0	5	47	1.24
10655149--10655290	74	1.9	74	89	0	221	47	6	5	40	1.52
10659967--10660007	21	2.0	21	90	0	64	24	26	14	34	1.94
10659897--10660061	60	2.7	59	82	10	183	30	21	19	29	1.97
10661307--10661345	19	2.0	20	90	5	62	35	15	23	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10663928--10663957	13	2.2	14	94	5	53	46	6	26	20	1.75
10669566--10669659	26	3.6	26	89	2	136	53	6	12	27	1.63
10684997--10685598	299	2.0	299	86	1	839	27	21	18	33	1.96
10687617--10687657	19	2.1	20	82	13	50	58	7	0	34	1.26
10688054--10688101	25	1.9	25	83	8	62	45	6	0	47	1.27
10688261--10688305	20	2.2	20	80	7	56	68	2	0	28	1.01
10688948--10689006	30	1.9	31	83	10	77	47	0	3	49	1.18
10704290--10704330	18	2.2	20	83	16	52	51	4	4	39	1.45
10705843--10705896	26	2.2	24	83	12	65	55	0	0	44	0.99
10708431--10708501	32	2.2	32	90	5	108	33	7	16	42	1.76
10719485--10719782	43	7.0	42	83	6	370	24	14	12	48	1.78
10719485--10719787	85	3.6	85	89	4	452	24	15	12	48	1.78
10719491--10719785	128	2.3	127	87	3	457	24	15	11	48	1.78
10736681--10736946	132	2.0	131	97	2	500	48	15	14	21	1.80
10737116--10737168	26	2.0	26	89	7	81	43	7	15	33	1.74
10739484--10739818	144	2.3	144	90	0	517	38	17	18	25	1.92
10739521--10739799	72	3.9	72	87	6	413	39	17	18	24	1.91
10739484--10739816	72	4.6	71	83	7	404	39	16	18	25	1.92
10747000--10747034	17	2.1	17	94	0	61	57	5	8	28	1.52
10749324--10749362	17	2.2	18	86	4	53	43	12	2	41	1.56
10749541--10749682	29	4.9	28	80	10	169	37	14	9	38	1.79
10749516--10749682	59	2.8	58	85	6	221	40	12	8	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10774674--10774719	18	2.4	20	75	7	51	28	6	0	65	1.17
10774993--10775058	33	2.0	33	82	5	80	22	0	4	72	1.02
10775002--10775070	24	2.8	24	81	16	70	24	2	1	71	1.09
10775706--10775766	22	2.8	22	82	2	70	3	40	18	37	1.67
10776018--10776065	23	2.2	21	88	7	69	20	2	0	77	0.88
10777203--10777245	15	2.9	15	86	10	61	62	0	4	32	1.15
10786430--10786570	27	5.2	26	80	7	156	42	10	15	31	1.81
10786444--10786570	53	2.4	54	85	7	170	40	11	15	31	1.84
10786432--10786617	80	2.3	80	81	7	216	39	10	16	33	1.83
10786432--10786600	82	2.1	82	83	6	209	41	10	15	32	1.81
10787423--10787498	31	2.5	31	84	4	100	28	7	10	52	1.64
10788356--10788397	18	2.3	18	84	8	50	2	14	4	78	1.01
10795991--10796063	28	2.6	28	91	0	119	39	13	6	39	1.72
10798454--10798492	17	2.4	16	91	4	60	30	0	0	69	0.89
10801911--10801948	19	2.0	19	94	0	67	42	28	0	28	1.56
10806346--10806383	19	2.0	19	89	0	58	44	28	0	26	1.54
10811901--10811938	19	2.0	19	100	0	76	26	0	31	42	1.56
10815337--10815361	2	12.5	2	100	0	50	48	0	0	52	1.00
10821028--10821385	181	2.0	181	95	0	644	44	13	17	23	1.84
10821649--10821687	19	2.0	20	85	5	53	48	5	5	41	1.47
10822033--10822085	26	2.0	26	85	7	72	45	7	13	33	1.71
10824972--10825645	72	9.4	71	83	4	737	39	17	17	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10829579--10829638	2	31.0	2	80	15	56	46	3	0	48	1.18
10829576--10829654	38	2.1	37	88	9	124	45	5	0	48	1.24
10830040--10830579	93	5.8	93	87	2	735	34	13	17	34	1.89
10834485--10834521	10	3.8	10	86	13	51	72	13	2	10	1.21
10834583--10834798	34	6.3	34	77	2	207	25	13	33	27	1.93
10834577--10834798	69	3.2	67	81	9	218	25	13	33	27	1.93
10834577--10834798	103	2.2	103	88	2	322	25	13	33	27	1.93
10835575--10835608	2	17.0	2	100	0	68	50	0	0	50	1.00
10835713--10835762	3	16.3	3	88	12	75	70	0	0	30	0.88
10835716--10835760	22	2.0	22	91	8	74	71	0	0	28	0.87
10835711--10835762	25	2.1	25	92	7	88	69	0	0	30	0.89
10836069--10836093	3	8.3	3	100	0	50	68	0	0	32	0.90
10836137--10836186	25	2.0	25	100	0	100	44	4	24	28	1.72
10836296--10836354	13	4.5	13	82	14	77	76	0	1	22	0.88
10836296--10836354	27	2.3	26	88	5	84	76	0	1	22	0.88
10836296--10836354	6	9.2	6	82	14	64	76	0	1	22	0.88
10839854--10839944	2	47.0	2	78	14	75	48	2	2	42	1.27
10840816--10840967	56	2.7	54	80	7	180	32	15	13	38	1.86
10843454--10843478	13	1.9	13	100	0	50	56	0	0	44	0.99
10869995--10870032	19	2.0	19	94	0	67	28	0	28	42	1.56
10882821--10882859	15	2.7	14	80	7	51	82	5	5	7	0.96
10885943--10885987	21	2.3	18	85	11	54	51	2	2	44	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10886807--10886850	22	2.0	23	81	4	54	15	25	6	52	1.68
10887101--10887153	28	1.9	28	88	3	81	32	22	15	30	1.94
10887196--10887233	19	2.0	19	100	0	76	42	31	0	26	1.56
10887847--10888050	36	5.8	36	86	4	240	37	5	12	43	1.67
10887847--10888052	71	2.9	71	85	5	258	37	5	12	44	1.67
10932702--10932773	37	1.9	37	83	5	92	18	20	40	20	1.92
10935346--10935546	87	2.3	87	81	3	235	39	8	7	44	1.64
10944870--10944924	26	2.1	26	82	0	65	65	7	1	25	1.28
10945551--10945624	32	2.4	31	88	6	105	29	5	0	64	1.15
10959539--10959590	28	1.9	27	84	7	70	28	17	19	34	1.94
10959645--10959682	20	1.9	20	100	0	76	44	21	5	28	1.73
10972467--10972511	23	2.0	23	100	0	90	42	13	4	40	1.64
10975129--10975166	14	2.7	15	88	8	53	76	0	0	23	0.79
10983016--10983053	20	1.9	20	94	0	67	44	18	7	28	1.78
10987310--10987349	5	8.0	5	85	0	53	37	20	0	42	1.52
10987391--10987436	15	3.1	15	87	0	65	56	17	2	23	1.52
10989754--10989810	27	2.1	27	83	6	71	24	22	22	29	1.99
10994714--10994774	24	2.6	22	71	16	59	62	0	31	6	1.21
10994796--10994845	20	2.5	20	87	3	66	74	0	24	2	0.93
10994799--10994852	10	5.3	10	79	16	58	75	0	22	1	0.89
10994932--10995049	51	2.4	50	88	2	175	47	5	43	3	1.44
10994932--10995035	51	2.1	50	92	7	176	50	5	41	1	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11006479--11006564	27	3.2	27	88	1	120	5	22	19	52	1.67
11006557--11006588	5	6.6	5	92	7	57	0	18	0	81	0.70
11009291--11009379	21	4.2	21	86	0	115	34	21	15	28	1.94
11009859--11009894	19	1.9	18	88	5	54	19	0	5	75	1.00
11011319--11011358	21	1.9	21	89	0	62	42	5	25	27	1.75
11013700--11013757	8	7.6	8	83	9	77	65	0	32	1	1.03
11013688--11013757	15	4.5	15	84	8	88	62	1	34	1	1.13
11015374--11015399	2	13.0	2	100	0	52	50	0	0	50	1.00
11015472--11015498	2	13.5	2	100	0	54	48	0	0	51	1.00
11015498--11015538	17	2.3	19	80	16	52	29	4	14	51	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54