genome.fa.s1.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  55868233

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  187  of  187  ( 22383 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55772339--55772929	85	6.9	85	83	3	695	17	34	31	16	1.92
55772315--55772929	128	4.8	128	78	5	618	18	34	31	15	1.92
55772946--55773010	11	5.5	11	72	13	58	15	40	41	3	1.63
55772935--55773012	24	3.2	24	96	0	138	16	37	41	5	1.71
55772957--55772999	13	3.5	13	75	12	54	13	37	44	4	1.65
55773222--55773534	42	7.4	42	78	10	309	19	33	28	18	1.95
55773258--55773534	85	3.3	85	82	8	350	19	33	29	18	1.95
55774179--55774232	27	2.0	27	100	0	108	44	14	25	14	1.84
55785155--55786094	43	22.0	42	77	5	798	17	34	31	15	1.92
55785158--55786096	85	11.0	83	81	4	910	17	34	31	15	1.92
55785158--55786096	128	7.3	127	80	4	969	17	34	31	15	1.92
55786113--55786177	11	5.5	11	72	13	58	15	40	41	3	1.63
55786102--55786179	24	3.2	24	96	0	138	16	37	41	5	1.71
55786124--55786166	13	3.5	13	75	12	54	13	37	44	4	1.65
55786389--55786724	42	7.9	42	77	10	319	20	33	27	17	1.96
55794647--55795586	43	22.0	42	78	5	791	17	34	31	15	1.92
55794650--55795588	85	11.0	84	82	4	965	17	34	31	15	1.92
55794644--55795588	128	7.4	125	79	5	883	17	34	31	15	1.92
55795605--55795669	11	5.5	11	72	13	58	15	40	41	3	1.63
55795594--55795671	24	3.2	24	96	0	138	16	37	41	5	1.71
55795616--55795658	13	3.5	13	75	12	54	13	37	44	4	1.65
55795881--55796216	42	7.9	42	77	10	319	20	33	27	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55804173--55804244	22	3.3	22	94	0	117	30	16	27	25	1.97
55804253--55805036	43	18.4	43	79	5	822	17	34	32	15	1.92
55804253--55805036	128	6.1	128	80	4	816	17	34	32	15	1.92
55804253--55805036	85	9.2	84	82	3	820	17	34	32	15	1.92
55805179--55805361	42	4.3	41	75	10	156	21	33	26	18	1.96
55805233--55805359	42	3.0	42	82	7	157	21	34	25	18	1.96
55805172--55805361	85	2.2	83	81	10	208	22	33	25	18	1.97
55813293--55814188	43	21.0	42	79	5	836	17	34	31	15	1.92
55813293--55814188	128	7.0	126	78	5	827	17	34	31	15	1.92
55813273--55814188	85	10.7	84	81	4	899	17	34	31	15	1.92
55814194--55814260	24	2.8	24	95	0	116	16	35	41	5	1.73
55814216--55814258	13	3.5	13	75	12	54	13	37	44	4	1.65
55814455--55814755	42	7.1	42	78	9	301	19	33	28	17	1.95
55822702--55823213	43	12.0	42	81	4	413	18	35	31	14	1.91
55822688--55823207	85	6.1	84	80	5	413	18	36	31	14	1.90
55822702--55823213	128	4.0	125	79	7	474	18	35	31	14	1.91
55822702--55823213	171	3.0	170	79	6	516	18	35	31	14	1.91
55823342--55823932	43	13.9	43	77	5	601	17	34	31	16	1.92
55823342--55823932	85	6.9	85	83	3	704	17	34	31	16	1.92
55823316--55823932	128	4.8	128	78	5	631	17	34	31	16	1.92
55823938--55824015	24	3.2	24	94	0	129	17	37	39	5	1.72
55824225--55824560	42	7.9	42	77	10	319	20	33	27	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55832522--55832637	43	2.7	43	87	0	169	19	40	26	12	1.88
55832867--55832931	11	5.5	11	72	13	58	15	40	41	3	1.63
55832856--55832933	24	3.2	24	96	0	138	16	37	41	5	1.71
55832878--55832920	13	3.5	13	75	12	54	13	37	44	4	1.65
55833143--55833478	42	7.9	42	77	10	319	20	33	27	17	1.96
55841407--55842346	43	22.0	42	78	5	791	17	34	31	15	1.92
55841410--55842348	85	11.0	84	82	4	965	17	34	31	15	1.92
55841404--55842348	128	7.4	125	79	5	883	17	34	31	15	1.92
55842365--55842429	11	5.5	11	72	13	58	15	40	41	3	1.63
55842354--55842431	24	3.2	24	96	0	138	16	37	41	5	1.71
55842376--55842418	13	3.5	13	75	12	54	13	37	44	4	1.65
55842641--55842976	42	7.9	42	77	10	310	20	33	27	17	1.96
55866553--55867105	42	12.9	42	75	7	425	18	34	30	16	1.93
55866576--55867105	85	6.2	85	81	4	600	17	33	31	17	1.93
55867122--55867186	11	5.5	11	72	13	58	15	40	41	3	1.63
55867111--55867188	24	3.2	24	96	0	138	16	37	41	5	1.71
55867133--55867175	13	3.5	13	75	12	54	13	37	44	4	1.65
55867398--55867698	42	7.1	42	77	9	292	20	33	27	18	1.96
55867746--55867776	15	2.1	15	100	0	62	19	29	32	19	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187

The End!