Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  55868233

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  44  of  187  ( 22383 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13476079--13476222
64
2.2
64
92
0
243
32
11
16
38
1.85
13476079--13476239
32
5.0
32
81
3
182
32
11
16
40
1.83
13476079--13476239
64
2.5
64
82
6
202
32
11
16
40
1.83
13476366--13476492
41
3.0
41
73
11
114
29
16
27
26
1.97
13482180--13482266
45
1.9
45
97
0
165
20
20
11
47
1.81
13484651--13484750
48
2.1
48
81
3
112
32
11
8
49
1.67
13489694--13489738
22
2.1
21
83
4
54
13
11
2
73
1.19
13490866--13490897
17
1.9
17
93
6
57
6
18
6
68
1.32
13492853--13492886
12
2.8
12
95
4
59
20
50
20
8
1.75
13493863--13493917
3
18.3
3
92
0
92
34
3
0
61
1.13
13505846--13506436
218
2.7
218
94
0
1011
31
19
20
28
1.97
13505848--13506534
44
15.8
44
71
10
296
31
19
20
28
1.97
13506238--13506596
172
2.1
169
84
4
454
30
18
20
30
1.96
13508083--13508125
3
14.3
3
90
0
68
34
4
0
60
1.17
13510036--13510073
18
2.1
19
85
5
51
52
2
0
44
1.14
13510285--13510331
2
23.5
2
100
0
94
51
0
0
48
1.00
13512034--13512078
2
23.0
2
86
13
67
48
0
2
48
1.13
13517316--13517356
16
2.6
16
85
11
50
36
7
9
46
1.65
13523109--13523177
25
2.8
24
82
6
84
31
2
0
65
1.08
13524005--13524066
28
2.1
30
82
11
76
40
1
3
54
1.26
13525535--13525724
41
4.7
41
92
1
319
22
29
21
26
1.99
13525535--13525724
81
2.3
82
92
0
319
22
29
21
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13527307--13527392
9
8.6
10
72
24
58
60
1
1
37
1.12
13527308--13527357
22
2.4
21
86
6
66
58
2
0
40
1.10
13527301--13527364
21
3.1
19
75
22
58
60
3
0
35
1.12
13527235--13527393
10
16.6
9
70
22
69
60
2
1
35
1.21
13528365--13528540
86
2.0
86
92
0
289
17
18
15
48
1.81
13529923--13530010
28
3.1
27
78
19
74
31
1
4
62
1.23
13529923--13530098
18
9.3
18
72
19
103
31
1
4
62
1.25
13529958--13530030
28
2.7
26
74
17
69
32
2
2
61
1.24
13529923--13530098
10
18.7
9
69
20
103
31
1
4
62
1.25
13534863--13534937
31
2.4
31
81
0
87
42
12
6
38
1.68
13537080--13537171
42
2.2
42
88
0
130
18
22
33
25
1.97
13537646--13537684
2
20.0
2
89
5
62
0
53
0
46
1.00
13537922--13537961
19
2.0
20
85
4
55
10
17
15
57
1.64
13543033--13543081
22
2.2
23
85
10
66
34
0
2
63
1.06
13543029--13543083
23
2.4
23
82
11
69
34
0
1
63
1.05
13545648--13545756
40
2.7
40
81
2
110
20
25
31
22
1.98
13545931--13545955
10
2.5
10
100
0
50
52
0
0
48
1.00
13546708--13546753
10
4.8
10
76
10
51
65
0
0
34
0.93
13546775--13546885
11
10.4
11
70
15
81
43
1
30
24
1.65
13546751--13546850
51
2.0
51
88
4
148
45
2
27
26
1.65
13546810--13546886
22
3.5
22
83
16
97
42
1
31
24
1.63
13546810--13546885
33
2.3
35
84
9
104
42
1
31
25
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13547078--13547119
19
2.2
19
95
0
75
11
16
35
35
1.86
13547408--13547434
11
2.5
11
100
0
54
44
11
14
29
1.80
13551866--13551899
14
2.4
14
95
0
59
20
17
29
32
1.96
13553903--13553942
21
1.9
21
89
0
62
15
37
10
37
1.80
13554023--13554138
46
2.5
46
80
8
112
26
25
14
33
1.94
13554431--13554511
24
3.4
24
91
0
135
28
25
13
32
1.94
13565917--13566052
51
2.7
50
85
6
179
30
29
19
21
1.97
13568093--13568126
16
2.1
16
88
0
50
44
20
14
20
1.87
13569180--13569209
15
2.0
15
93
0
51
36
0
6
56
1.26
13577563--13577592
2
15.0
2
100
0
60
50
0
0
50
1.00
13580920--13580957
6
6.5
6
96
3
69
52
0
47
0
1.00
13580971--13581063
47
2.0
47
83
10
120
62
0
32
5
1.18
13581562--13581601
20
2.0
20
85
0
53
32
0
10
57
1.32
13581570--13581611
22
2.0
20
90
9
66
30
0
4
64
1.14
13583022--13583055
14
2.4
14
100
0
68
35
14
5
44
1.70
13584254--13584365
48
2.3
48
93
0
197
50
8
6
34
1.59
13588990--13589415
50
8.5
50
69
8
238
25
19
21
34
1.96
13589084--13589451
100
3.7
100
85
1
396
25
19
22
32
1.97
13588990--13589263
150
1.8
150
82
0
350
24
20
21
34
1.96
13588986--13589296
150
2.1
150
77
2
320
25
18
21
34
1.96
13589085--13589451
200
1.8
200
85
0
518
25
19
22
32
1.97
13590699--13590801
49
2.1
49
85
3
136
12
20
17
49
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13597489--13597523
18
1.9
18
100
0
70
25
22
11
40
1.88
13600583--13600699
40
2.9
41
77
7
116
32
23
25
17
1.97
13600757--13601078
41
7.8
40
79
8
270
15
24
25
35
1.94
13600758--13600977
83
2.7
84
87
2
293
13
23
26
36
1.92
13600757--13601061
83
3.7
82
79
6
287
14
23
24
36
1.93
13605944--13606147
9
23.6
9
70
21
84
44
15
2
37
1.62
13605944--13606448
31
16.6
29
71
20
213
44
13
4
37
1.63
13605957--13606078
34
3.7
34
80
6
160
45
10
4
39
1.61
13605943--13606071
65
2.0
65
98
0
249
44
10
5
39
1.63
13605944--13606086
65
2.2
65
93
2
245
44
12
4
39
1.62
13606071--13606156
7
11.4
7
81
14
100
44
24
0
31
1.54
13606066--13606154
16
5.2
16
84
12
115
43
23
0
32
1.54
13606069--13606154
23
3.7
23
78
18
99
44
23
0
32
1.54
13606201--13606304
28
3.7
27
80
7
109
48
8
5
37
1.58
13606327--13606436
22
5.1
22
71
19
88
43
11
5
39
1.64
13606159--13606456
63
4.9
61
83
10
353
45
10
5
38
1.61
13606457--13606541
16
5.3
16
81
16
81
44
22
1
31
1.60
13606469--13606766
9
36.1
9
69
17
107
43
17
1
37
1.59
13606466--13606520
7
7.3
7
84
15
74
43
25
0
30
1.55
13606466--13606540
23
3.2
23
94
3
123
45
24
0
30
1.53
13606618--13606764
16
8.8
16
73
14
102
42
19
1
36
1.59
13606617--13606764
34
4.4
33
70
14
106
43
18
1
36
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13606802--13606834
16
2.1
16
94
0
57
51
18
0
30
1.46
13612270--13612399
66
2.0
66
87
3
190
40
19
25
15
1.90
13612270--13612431
66
2.5
66
83
4
175
38
19
27
14
1.90
13612837--13612961
43
2.9
42
87
8
164
33
28
19
19
1.96
13612888--13613027
43
3.3
43
81
5
133
28
27
20
24
1.99
13612931--13613027
42
2.3
43
81
1
115
26
25
20
26
1.99
13613161--13613203
22
2.0
22
95
0
77
41
27
20
9
1.83
13613517--13613558
14
3.1
13
78
21
50
59
4
0
35
1.19
13613525--13613562
16
2.4
16
82
4
51
60
5
0
34
1.19
13613751--13613838
18
4.8
17
69
22
54
61
3
3
31
1.29
13614067--13614147
40
2.0
40
100
0
162
29
24
19
25
1.99
13620565--13620633
25
2.7
26
80
12
74
36
2
0
60
1.11
13623022--13623091
23
3.0
23
87
0
104
38
17
18
25
1.92
13623135--13623190
26
2.1
26
86
3
76
62
0
1
35
1.06
13636527--13636553
10
2.7
10
100
0
54
18
11
0
70
1.16
13643943--13644018
28
2.7
28
93
0
125
23
26
27
22
1.99
13644140--13644189
26
1.9
26
100
0
100
38
26
24
12
1.90
13644140--13644218
26
3.0
27
85
3
99
36
25
22
15
1.93
13644369--13644724
27
13.2
27
87
2
457
19
21
17
41
1.91
13645430--13645474
20
2.1
22
84
8
58
55
2
40
2
1.24
13649816--13649841
2
13.0
2
100
0
52
50
0
0
50
1.00
13650605--13650644
11
3.5
11
83
12
53
60
0
2
37
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13650948--13650980
16
2.1
16
100
0
66
36
6
36
21
1.78
13651194--13651235
15
2.7
16
82
14
52
52
2
0
45
1.13
13651203--13651244
15
2.9
15
82
10
52
52
0
0
47
1.00
13651229--13651536
61
5.1
60
67
16
224
48
6
2
42
1.42
13651192--13651620
120
3.6
120
96
0
761
49
5
2
42
1.39
13651313--13651364
15
3.6
15
80
12
56
53
1
0
44
1.11
13651200--13651608
59
6.8
58
66
17
203
49
5
2
42
1.38
13651454--13651488
18
2.0
17
88
5
52
54
0
0
45
0.99
13651574--13651608
18
2.0
17
88
5
52
54
0
0
45
0.99
13651550--13651810
91
2.7
99
81
11
351
48
3
2
45
1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187