genome.fa.s1.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr01 ID=Chr01-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  55868233

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   

This is table  186  of  187  ( 22383 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55630542--55631457	85	10.7	84	81	4	901	18	34	31	15	1.92
55630565--55631457	43	20.9	43	79	5	859	17	34	31	16	1.92
55630562--55631457	128	7.0	125	78	5	812	17	34	31	16	1.92
55630542--55631444	299	3.0	299	85	5	1112	17	34	31	15	1.92
55631474--55631538	11	5.5	11	72	13	58	15	40	41	3	1.63
55631463--55631540	24	3.2	24	96	0	138	16	37	41	5	1.71
55631485--55631527	13	3.5	13	75	12	54	13	37	44	4	1.65
55631750--55632085	42	7.9	42	78	10	328	20	34	27	17	1.95
55639773--55639925	22	7.0	22	90	0	225	32	14	26	26	1.94
55643647--55644540	43	21.0	42	81	4	859	17	34	32	14	1.91
55643650--55644540	128	7.0	127	81	4	847	17	35	32	15	1.91
55643627--55644540	85	10.7	85	81	4	898	17	35	31	14	1.91
55644546--55644606	24	2.5	24	97	0	113	18	36	40	4	1.72
55644807--55645142	42	7.9	42	77	10	319	20	33	27	17	1.96
55653069--55653965	43	21.0	42	77	5	775	17	34	31	15	1.92
55653052--55653967	85	10.7	84	82	4	937	17	35	31	15	1.92
55653072--55653967	128	7.0	126	79	5	890	17	34	31	15	1.92
55653984--55654048	11	5.5	11	72	13	58	15	40	41	3	1.63
55653973--55654050	24	3.2	24	96	0	138	16	37	41	5	1.71
55653995--55654037	13	3.5	13	75	12	54	13	37	44	4	1.65
55654260--55654595	42	7.9	42	77	10	319	20	33	27	17	1.96
55660739--55661634	43	21.0	41	79	5	777	17	34	32	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55660721--55661634	85	10.7	83	81	4	873	18	34	31	15	1.92
55660742--55661634	128	7.0	127	79	6	853	17	34	31	15	1.92
55661651--55661715	11	5.5	11	72	13	58	15	40	41	3	1.63
55661640--55661717	24	3.2	24	96	0	138	16	37	41	5	1.71
55661662--55661704	13	3.5	13	75	12	54	13	37	44	4	1.65
55661926--55662261	42	7.9	42	77	10	319	20	33	27	17	1.96
55665452--55666389	43	22.0	42	80	5	850	17	34	31	15	1.92
55665455--55666391	85	11.0	84	81	4	997	17	34	31	15	1.92
55666408--55666472	11	5.5	11	72	13	58	15	40	41	3	1.63
55666397--55666474	24	3.2	24	96	0	138	16	37	41	5	1.71
55666419--55666461	13	3.5	13	75	12	54	13	37	44	4	1.65
55666677--55666982	42	7.2	42	76	11	286	21	33	27	17	1.95
55666678--55666982	85	3.6	84	78	11	320	21	33	27	17	1.96
55673447--55673492	23	2.0	23	100	0	92	34	8	30	26	1.86
55674911--55675676	43	18.0	42	77	6	652	17	34	31	15	1.92
55674914--55675678	85	9.0	84	82	4	815	17	34	31	15	1.92
55675695--55675759	11	5.5	11	72	13	58	15	40	41	3	1.63
55675684--55675761	24	3.2	24	96	0	138	16	37	41	5	1.71
55675706--55675748	13	3.5	13	75	12	54	13	37	44	4	1.65
55675971--55676306	42	7.9	42	77	10	319	20	33	27	17	1.96
55684235--55685174	43	22.0	42	78	5	816	17	34	31	15	1.92
55684241--55685176	85	11.0	85	83	3	1069	17	34	31	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55684238--55685176	128	7.3	127	79	5	919	17	34	31	15	1.92
55684241--55685176	171	5.5	169	84	3	1092	17	34	31	15	1.92
55685193--55685257	11	5.5	11	72	13	58	15	40	41	3	1.63
55685182--55685259	24	3.2	24	96	0	138	16	37	41	5	1.71
55685204--55685246	13	3.5	13	75	12	54	13	37	44	4	1.65
55685469--55685804	42	7.9	42	78	10	328	20	34	27	17	1.95
55693714--55694636	43	21.5	42	75	8	537	19	34	30	16	1.93
55693734--55694640	85	10.6	84	77	7	670	19	33	30	16	1.93
55693728--55694640	128	7.1	125	74	9	603	19	34	30	16	1.93
55693734--55694578	171	4.9	169	77	7	744	18	34	31	16	1.93
55702591--55702926	42	7.9	42	77	10	310	20	34	27	17	1.96
55702627--55702926	85	3.5	86	80	8	339	21	34	27	17	1.96
55710568--55710632	11	5.5	11	72	13	58	15	40	41	3	1.63
55710557--55710634	24	3.2	24	96	0	138	16	37	41	5	1.71
55710579--55710621	13	3.5	13	75	12	54	13	37	44	4	1.65
55710844--55711179	42	7.9	42	77	10	319	20	33	27	17	1.96
55714698--55714740	13	3.5	13	75	12	54	13	37	44	4	1.65
55714693--55714753	24	2.5	24	100	0	122	18	37	40	3	1.67
55719508--55720447	43	22.0	42	78	5	791	17	34	31	15	1.92
55719511--55720449	85	11.0	84	82	4	965	17	34	31	15	1.92
55719505--55720449	128	7.4	125	79	5	883	17	34	31	15	1.92
55720466--55720530	11	5.5	11	72	13	58	15	40	41	3	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55720455--55720532	24	3.2	24	96	0	138	16	37	41	5	1.71
55720477--55720519	13	3.5	13	75	12	54	13	37	44	4	1.65
55720781--55720883	41	2.5	41	84	9	120	19	32	29	19	1.96
55720743--55721033	42	6.9	42	69	16	172	24	32	26	16	1.96
55724656--55725067	43	9.7	42	75	6	382	17	34	31	16	1.92
55724688--55725067	85	4.5	85	87	1	546	17	34	32	16	1.92
55724656--55725067	128	3.2	128	77	5	411	17	34	31	16	1.92
55725084--55725148	11	5.5	11	72	13	58	15	40	41	3	1.63
55725073--55725150	24	3.2	24	96	0	138	16	37	41	5	1.71
55725095--55725137	13	3.5	13	75	12	54	13	37	44	4	1.65
55725360--55725695	42	7.9	42	77	10	310	20	34	27	17	1.96
55725396--55725695	85	3.5	86	80	8	339	21	34	27	17	1.96
55725883--55725959	22	3.5	22	85	0	109	29	14	25	29	1.95
55727001--55727026	11	2.4	11	100	0	52	15	34	26	23	1.94
55729383--55729453	36	2.0	36	94	0	124	47	12	11	28	1.76
55734719--55735629	43	21.3	41	78	6	627	18	35	31	15	1.92
55734719--55735622	128	7.1	127	80	5	876	18	35	31	15	1.92
55734736--55735635	171	5.3	170	78	4	868	18	34	31	15	1.92
55734742--55735635	299	3.0	296	86	4	1163	18	34	31	15	1.92
55735652--55735716	11	5.5	11	72	13	58	15	40	41	3	1.63
55735641--55735718	24	3.2	24	96	0	138	16	37	41	5	1.71
55735663--55735705	13	3.5	13	75	12	54	13	37	44	4	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55735928--55736263	42	7.9	42	78	10	328	20	34	27	17	1.95
55738190--55738902	43	16.7	43	76	6	651	18	34	31	16	1.93
55738190--55738902	85	8.3	85	82	4	756	18	34	31	16	1.93
55738190--55738902	128	5.6	128	79	5	742	18	34	31	16	1.93
55738919--55738983	11	5.5	11	72	13	58	15	40	41	3	1.63
55738908--55738985	24	3.2	24	96	0	138	16	37	41	5	1.71
55738930--55738972	13	3.5	13	75	12	54	13	37	44	4	1.65
55739195--55739530	42	7.9	42	77	10	310	20	34	27	17	1.96
55739231--55739530	85	3.5	86	80	8	339	21	34	27	17	1.96
55746007--55746903	43	21.0	42	78	5	748	17	35	31	15	1.91
55745990--55746905	85	10.7	83	81	4	873	18	35	31	15	1.91
55746010--55746905	128	7.0	126	79	5	822	17	34	31	15	1.92
55746013--55746905	256	3.5	251	84	6	960	17	34	31	15	1.92
55746924--55746988	24	2.7	24	100	0	130	16	38	41	3	1.64
55746933--55746975	13	3.5	13	75	12	54	13	37	44	4	1.65
55747198--55747533	42	7.9	42	77	10	319	20	33	27	17	1.96
55755445--55756091	43	15.2	42	80	5	543	17	35	31	14	1.91
55755445--55756104	85	7.7	85	83	4	733	18	35	31	14	1.91
55755445--55756091	128	5.1	125	77	6	555	17	35	31	14	1.91
55756121--55756185	11	5.5	11	72	13	58	15	40	41	3	1.63
55756110--55756187	24	3.2	24	96	0	138	16	37	41	5	1.71
55756132--55756174	13	3.5	13	75	12	54	13	37	44	4	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55756397--55756732	42	7.9	42	77	10	319	20	33	27	17	1.96
55764660--55765641	43	23.0	42	78	6	798	17	34	31	15	1.91
55764643--55765643	85	11.7	84	81	5	976	18	35	31	15	1.91
55764657--55765630	128	7.6	127	78	6	815	17	34	31	15	1.92
55764643--55765643	341	2.9	342	86	4	1267	18	35	31	15	1.91
55765649--55765702	24	2.2	24	93	0	90	16	37	40	5	1.72
55765912--55766247	42	7.9	42	77	10	319	20	33	28	17	1.95
55765948--55766247	85	3.5	85	81	8	353	20	33	28	17	1.95
55772019--55772180	43	3.8	43	85	2	193	17	37	31	12	1.88
55772339--55772929	43	13.9	43	77	5	592	17	34	31	16	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187