genome.fa.s6.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  10  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3289057--3289098	22	1.9	22	85	9	59	47	23	9	19	1.78
3289962--3290049	22	4.0	22	90	0	131	42	25	13	19	1.88
3294323--3294353	16	1.9	16	93	0	53	38	9	19	32	1.84
3294339--3294402	31	2.1	31	85	5	85	37	18	20	23	1.94
3294534--3294590	30	1.9	30	89	7	89	36	14	14	35	1.86
3296244--3296293	2	24.0	2	80	15	57	48	4	2	46	1.32
3296246--3296300	17	3.2	17	75	10	58	45	3	5	45	1.44
3297033--3297078	23	2.0	23	95	0	83	41	13	13	32	1.82
3297903--3297939	19	1.9	19	100	0	74	45	0	21	32	1.52
3304343--3304374	11	2.9	11	90	0	55	28	18	25	28	1.98
3322065--3322197	34	3.9	34	77	9	119	24	17	23	34	1.96
3322086--3322295	115	1.8	115	83	4	280	23	14	24	37	1.92
3322724--3322797	33	2.2	34	82	2	87	39	18	17	24	1.92
3325810--3326371	250	2.2	254	89	2	866	38	9	4	47	1.56
3334514--3334543	14	2.1	14	93	0	51	33	43	3	20	1.68
3339807--3339844	19	2.0	19	89	0	58	28	0	23	47	1.52
3339812--3339850	19	2.1	19	85	0	51	25	0	28	46	1.53
3345994--3346037	2	22.0	2	100	0	88	0	0	50	50	1.00
3347012--3347057	22	2.1	22	88	8	67	71	0	28	0	0.86
3350273--3350310	18	2.1	19	90	5	60	18	13	10	57	1.63
3350682--3350713	2	16.0	2	100	0	64	50	50	0	0	1.00
3352908--3352954	20	2.3	20	81	0	58	29	8	19	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3355132--3355353	42	5.2	42	88	0	273	24	17	33	24	1.96
3360711--3360824	57	2.0	57	94	1	203	39	13	23	23	1.90
3368299--3368390	46	2.0	46	86	0	130	25	16	23	34	1.95
3368977--3369073	33	2.9	34	82	1	97	38	22	15	23	1.92
3369542--3369809	134	2.0	133	99	0	527	41	12	10	35	1.78
3372203--3372765	251	2.2	253	84	3	740	37	9	4	47	1.58
3372675--3372713	21	1.9	21	84	5	53	33	15	5	46	1.68
3373154--3373207	24	2.2	24	80	6	65	57	22	1	18	1.50
3374085--3374133	21	2.3	21	96	0	89	26	14	18	40	1.89
3377704--3377786	39	2.1	39	82	10	98	19	19	21	39	1.92
3377953--3377983	14	2.2	14	94	0	53	32	41	3	22	1.70
3387573--3387650	40	2.0	40	81	0	93	35	8	17	37	1.82
3387585--3387651	20	3.3	20	78	0	71	35	5	19	38	1.76
3388336--3388380	2	21.5	2	86	8	63	51	2	2	44	1.26
3393660--3393729	21	3.3	21	100	0	140	12	18	38	30	1.88
3393758--3393815	24	2.4	24	85	5	73	10	37	15	36	1.82
3393975--3394031	24	2.4	24	87	0	78	29	17	33	19	1.95
3393998--3394044	24	2.0	24	82	0	58	29	17	34	19	1.94
3396192--3396797	23	26.2	23	65	10	198	26	11	26	35	1.91
3396149--3396316	91	1.8	93	88	2	259	26	10	26	36	1.89
3396206--3396862	139	4.7	139	90	0	1005	26	12	26	35	1.91
3396192--3396885	23	30.0	22	65	11	142	26	11	26	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3405348--3405411	26	2.4	28	81	5	78	28	3	3	65	1.23
3405364--3405446	38	2.2	37	82	6	103	30	1	1	67	1.06
3405361--3405445	32	2.6	33	85	5	93	30	1	1	67	1.06
3405344--3405519	71	2.4	73	81	16	181	31	4	1	62	1.22
3405419--3405532	26	4.5	26	66	9	67	29	5	0	63	1.22
3405937--3406067	60	2.1	62	92	2	221	37	22	16	23	1.93
3406227--3406278	22	2.4	22	87	6	70	44	26	13	15	1.84
3406027--3406690	207	3.2	208	81	6	733	40	26	11	21	1.87
3406434--3406484	22	2.3	22	83	6	59	45	27	11	15	1.81
3408057--3408140	22	3.6	22	73	17	89	41	28	11	17	1.85
3408088--3408164	26	3.1	26	70	21	83	44	23	9	23	1.82
3408055--3408164	48	2.3	48	91	1	184	43	25	10	20	1.83
3408099--3408244	63	2.3	63	86	2	213	40	22	10	26	1.86
3411566--3411606	16	2.7	16	88	7	59	46	0	0	53	1.00
3411568--3411611	23	1.9	23	85	0	61	43	0	0	56	0.99
3422512--3422536	2	12.5	2	100	0	50	0	0	48	52	1.00
3426467--3426526	30	2.0	30	86	0	84	33	10	8	48	1.67
3428518--3428576	21	2.8	20	78	12	57	66	3	1	28	1.18
3435503--3435558	29	1.9	29	88	0	85	35	16	16	32	1.90
3436504--3436639	67	2.0	67	86	0	191	25	12	26	36	1.91
3438814--3438849	2	18.0	2	100	0	72	50	0	0	50	1.00
3438963--3439011	2	24.5	2	95	0	89	46	0	2	51	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3440071--3440098	14	2.0	14	100	0	56	71	0	14	14	1.15
3443002--3443045	18	2.4	19	92	3	72	70	0	11	18	1.16
3447381--3447446	19	3.5	19	77	6	64	77	0	1	21	0.85
3447381--3447446	27	2.6	24	82	17	80	77	0	1	21	0.85
3447399--3447442	19	2.4	19	88	11	65	77	0	0	22	0.77
3448015--3448039	11	2.3	11	100	0	50	84	0	16	0	0.63
3448011--3448058	17	2.8	17	82	14	55	83	2	14	0	0.74
3454071--3454101	2	15.5	2	93	0	53	48	0	3	48	1.17
3454211--3454262	26	2.1	24	82	13	61	34	5	9	50	1.59
3455482--3455513	15	2.1	15	94	0	55	9	25	0	65	1.22
3456558--3456584	14	1.9	14	100	0	54	66	7	3	22	1.33
3470404--3470429	5	5.2	5	100	0	52	0	19	0	80	0.71
3473430--3473518	29	3.1	28	80	11	90	33	25	13	26	1.93
3473430--3473495	28	2.3	29	87	10	91	30	24	15	30	1.95
3482528--3482570	7	6.0	7	81	13	52	69	0	2	27	1.00
3482528--3482570	15	3.0	14	83	12	52	69	0	2	27	1.00
3482562--3482596	18	1.9	18	88	0	52	68	0	14	17	1.21
3484032--3484134	52	2.0	51	98	0	188	34	5	30	28	1.81
3486101--3486161	24	2.7	23	87	7	81	18	8	50	22	1.73
3486146--3486242	15	6.3	15	74	7	77	14	2	60	22	1.44
3487853--3488057	82	2.6	82	78	12	212	33	11	13	41	1.80
3487957--3488035	26	3.1	26	76	7	74	29	10	13	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3487966--3488037	24	2.9	24	80	12	67	29	12	15	43	1.83
3487992--3488123	55	2.4	55	82	3	149	31	9	15	43	1.80
3488048--3488092	24	1.9	23	86	4	63	28	4	17	48	1.66
3494876--3494932	2	28.5	2	89	0	87	3	47	0	49	1.18
3499152--3499205	23	2.3	23	80	0	63	20	3	24	51	1.63
3499513--3499561	21	2.4	21	80	6	57	22	8	0	69	1.14
3507556--3507594	2	19.5	2	100	0	78	51	0	0	48	1.00
3508800--3508914	35	3.3	34	77	7	106	53	18	9	19	1.71
3508800--3508933	70	1.9	70	80	3	153	51	17	10	20	1.74
3509151--3509226	29	2.7	28	78	10	82	21	23	3	51	1.64
3509675--3509796	64	1.9	64	86	0	172	27	22	6	43	1.78
3510649--3510706	26	2.3	25	76	5	62	25	13	20	39	1.90
3513679--3513715	13	2.8	13	95	0	65	48	16	10	24	1.77
3520403--3520464	30	2.1	30	93	0	106	46	17	14	20	1.83
3538813--3538943	67	1.9	68	90	4	212	45	3	9	41	1.54
3542159--3542200	4	10.5	4	89	0	57	50	16	0	33	1.46
3542156--3542200	12	3.8	12	90	0	72	48	15	0	35	1.45
3544163--3544191	9	3.0	10	90	10	51	41	0	6	51	1.28
3547389--3547508	58	2.1	57	88	1	177	36	19	10	33	1.86
3557925--3557954	2	15.0	2	100	0	60	0	0	50	50	1.00
3561803--3561925	54	2.3	54	92	2	203	26	42	13	17	1.86
3561969--3562034	2	33.0	2	100	0	132	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3562548--3562590	21	2.0	21	86	0	59	25	27	18	27	1.98
3573391--3573430	18	2.2	18	86	8	55	22	0	2	75	0.93
3576429--3576454	2	13.0	2	100	0	52	50	0	50	0	1.00
3577716--3577740	13	1.9	13	100	0	50	36	0	0	64	0.94
3577901--3577925	2	12.5	2	100	0	50	0	48	0	52	1.00
3578264--3578297	3	11.3	3	93	0	59	0	29	0	70	0.87
3580534--3580558	5	5.0	5	100	0	50	20	0	80	0	0.72
3580692--3580730	2	20.0	2	94	5	71	0	48	0	51	1.00
3584408--3584445	20	1.9	20	88	0	58	76	0	0	23	0.79
3585811--3585837	2	13.5	2	100	0	54	0	51	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66