genome.fa.s6.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  50  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18155288--18155566	48	5.5	48	68	14	166	36	23	12	27	1.90
18155205--18155551	103	3.4	103	88	0	480	36	23	12	26	1.91
18160535--18160585	24	2.1	23	82	13	59	37	7	7	47	1.62
18161503--18161729	89	2.6	88	78	6	219	27	14	31	26	1.95
18162887--18162925	20	2.0	20	89	0	60	35	0	0	64	0.94
18166870--18166955	42	2.0	42	95	0	154	13	16	9	60	1.58
18168888--18168993	43	2.4	43	96	1	194	36	19	10	33	1.86
18179187--18179224	19	2.0	19	94	0	67	28	0	28	42	1.56
18186779--18186847	31	2.3	29	87	5	93	40	17	7	34	1.77
18186821--18186871	26	1.9	27	84	4	68	29	19	13	37	1.90
18186918--18187006	45	2.0	45	88	0	133	31	19	15	33	1.93
18186936--18187155	69	3.1	68	79	7	206	29	18	16	35	1.93
18187056--18187116	31	2.0	30	87	3	86	36	16	11	36	1.85
18187122--18187218	24	4.2	24	66	12	58	26	17	17	38	1.92
18187100--18187200	45	2.2	45	83	0	130	30	18	16	33	1.94
18186854--18187497	190	3.4	190	83	1	794	30	17	16	35	1.92
18187178--18187224	24	2.0	24	91	0	76	25	14	17	42	1.87
18187129--18187263	69	2.0	69	84	0	180	28	17	18	35	1.94
18187282--18187382	44	2.3	44	82	3	114	30	18	14	35	1.92
18187404--18187605	95	2.1	97	91	1	327	34	16	13	35	1.88
18187581--18187668	45	2.0	45	83	0	113	31	18	17	32	1.94
18187641--18187699	24	2.5	24	82	0	73	22	11	27	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18187605--18188032	69	6.0	68	71	14	258	28	16	18	36	1.93
18187785--18187846	24	2.6	24	78	0	70	29	9	19	41	1.83
18187268--18188056	289	2.8	284	83	4	942	31	16	16	35	1.91
18187710--18187899	100	1.9	99	83	1	245	31	14	16	36	1.90
18196896--18196951	23	2.4	23	81	0	58	30	10	33	25	1.90
18196918--18196977	23	2.6	23	86	5	77	31	13	31	23	1.93
18197007--18197104	23	4.3	22	75	10	74	36	14	29	19	1.91
18197017--18197105	46	1.9	46	86	4	126	35	11	32	20	1.88
18197069--18197308	23	10.6	22	69	16	102	30	13	29	27	1.94
18197355--18197421	23	2.9	23	80	10	75	26	16	31	25	1.96
18198191--18198266	31	2.5	31	95	0	134	28	14	21	35	1.92
18202845--18202881	2	18.5	2	100	0	74	51	0	0	48	1.00
18203040--18203078	2	19.5	2	100	0	78	51	0	0	48	1.00
18204123--18204154	13	2.5	13	94	0	55	34	9	28	28	1.88
18205065--18205107	5	9.0	5	85	14	56	20	0	0	79	0.74
18205556--18205594	18	2.2	17	90	9	60	2	25	0	71	0.98
18205891--18205917	8	3.4	8	100	0	54	14	0	0	85	0.61
18206263--18206315	26	2.1	26	86	6	74	15	3	1	79	0.96
18206274--18206315	9	4.8	9	82	5	50	11	2	2	83	0.84
18208110--18208325	76	2.8	76	83	0	270	35	25	15	23	1.94
18210380--18210534	63	2.5	63	84	0	193	25	30	16	28	1.96
18213477--18213539	25	2.6	25	80	5	85	36	20	12	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18213546--18213596	24	2.1	24	100	0	102	31	9	7	50	1.64
18216899--18216951	25	2.3	23	81	12	63	41	3	1	52	1.30
18217051--18217104	2	28.0	2	75	14	51	48	0	1	50	1.11
18217049--18217109	21	3.0	21	79	15	65	45	0	3	50	1.17
18218171--18218228	3	19.3	3	100	0	116	67	0	0	32	0.91
18236264--18236330	24	2.9	23	74	10	66	4	25	1	68	1.17
18236688--18236733	21	2.1	22	84	4	58	47	0	0	52	1.00
18236825--18236912	28	3.2	27	76	13	81	31	21	21	25	1.98
18237650--18237680	3	10.3	3	100	0	62	67	0	0	32	0.91
18245052--18245101	26	1.9	26	87	0	73	16	24	16	44	1.86
18245216--18245441	74	3.0	72	85	6	236	31	18	16	33	1.94
18245427--18245566	57	2.5	57	84	0	172	34	20	13	32	1.91
18245429--18245582	57	2.7	57	82	0	164	34	19	12	33	1.90
18245913--18245960	22	2.2	21	82	10	60	31	2	4	62	1.26
18251869--18251893	3	8.3	3	100	0	50	68	0	32	0	0.90
18255732--18255797	27	2.4	28	82	14	100	51	0	3	45	1.16
18260345--18260419	37	2.0	37	97	0	141	20	24	14	41	1.89
18271130--18271568	221	2.0	221	93	0	745	30	15	15	39	1.88
18271896--18272420	172	3.0	177	89	2	852	32	12	22	32	1.91
18271896--18272420	177	3.0	174	89	2	824	32	12	22	32	1.91
18278508--18278616	54	2.0	54	89	5	168	57	6	16	19	1.60
18278461--18278681	119	1.9	118	94	0	388	59	6	14	19	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18278549--18278760	71	3.1	70	82	11	274	62	4	13	19	1.48
18278469--18278706	119	2.0	118	89	2	345	61	6	13	19	1.53
18279096--18279152	29	2.0	29	82	0	69	12	14	33	40	1.83
18279283--18279335	4	13.2	4	91	0	88	28	0	20	50	1.48
18279501--18279652	76	2.0	76	88	0	223	15	18	30	35	1.92
18282064--18282088	3	8.3	3	100	0	50	36	0	0	64	0.94
18284726--18284800	21	3.5	21	78	3	87	24	9	21	45	1.81
18284733--18284802	22	3.2	22	78	9	81	24	10	20	45	1.81
18284815--18284902	23	3.9	23	83	3	97	34	25	10	30	1.89
18284878--18284947	26	2.7	26	88	0	113	40	25	10	24	1.86
18284934--18285008	21	3.5	21	85	1	78	42	24	10	22	1.85
18288597--18288658	2	31.0	2	86	0	52	51	11	0	37	1.38
18289022--18289051	13	2.4	13	94	5	53	73	0	0	26	0.84
18290179--18290215	3	12.7	3	94	5	67	64	35	0	0	0.94
18290179--18290212	17	2.0	17	100	0	68	64	35	0	0	0.94
18309633--18309678	23	2.0	23	100	0	92	43	8	17	30	1.79
18310123--18310164	22	1.9	22	95	0	75	47	9	11	30	1.72
18310777--18310850	23	3.2	23	75	7	69	45	4	2	47	1.35
18310923--18310994	32	2.4	27	75	20	72	54	0	1	44	1.08
18311914--18312015	40	2.5	40	85	3	152	37	20	17	24	1.94
18314016--18314508	253	2.0	252	99	0	968	48	13	7	30	1.70
18315741--18315873	41	3.2	41	74	13	130	29	24	9	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18316452--18316977	105	5.1	104	78	10	437	43	11	19	24	1.85
18316566--18316949	200	1.9	201	94	2	675	43	12	20	23	1.85
18323547--18323583	15	2.5	15	87	12	58	51	0	0	48	1.00
18323577--18323626	22	2.3	22	80	12	59	46	0	2	52	1.12
18323635--18323688	22	2.6	21	80	13	58	40	0	7	51	1.30
18330046--18330222	43	4.1	43	85	2	214	28	18	31	22	1.97
18332242--18332282	21	1.9	22	90	5	66	51	7	24	17	1.70
18332242--18332286	20	2.2	21	84	11	58	55	6	22	15	1.63
18332240--18332287	21	2.3	20	79	10	60	56	6	22	14	1.61
18338529--18338553	4	6.2	4	100	0	50	24	0	0	76	0.80
18338684--18338718	16	2.3	15	90	5	52	65	0	5	28	1.15
18339422--18339479	29	2.0	29	89	0	89	43	0	18	37	1.51
18342911--18342938	3	9.3	3	100	0	56	67	0	0	32	0.91
18351692--18351750	2	29.5	2	100	0	118	49	0	0	50	1.00
18354217--18354291	31	2.4	31	80	4	80	48	4	20	28	1.67
18355581--18355634	18	2.8	19	86	5	74	48	3	0	48	1.19
18358045--18358082	14	2.7	14	92	8	60	78	5	0	15	0.91
18361475--18361989	126	4.1	126	95	0	906	30	19	20	29	1.97
18365501--18365537	2	20.0	2	84	15	53	0	54	0	45	1.00
18365505--18365536	16	2.0	16	100	0	64	0	56	0	43	0.99
18368391--18368447	2	28.5	2	100	0	114	49	0	0	50	1.00
18377730--18377773	2	22.0	2	95	0	79	47	0	2	50	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18384755--18384811	21	2.6	21	77	8	60	21	24	19	35	1.96
18385486--18385553	24	2.9	24	84	2	93	36	13	4	45	1.63
18386543--18386570	14	2.0	14	100	0	56	28	0	21	50	1.49
18389765--18389797	2	16.5	2	100	0	66	48	0	0	51	1.00
18392439--18392620	89	2.0	90	90	4	287	43	18	17	20	1.88
18396507--18396548	18	2.3	18	80	8	50	23	61	14	0	1.32
18401649--18401730	41	2.0	42	85	7	114	43	14	13	28	1.83
18406522--18406560	19	2.0	19	85	5	51	46	12	12	28	1.79
18413737--18413964	117	2.0	115	98	0	429	24	23	8	42	1.82
18418187--18418215	3	9.7	3	100	0	58	31	0	0	68	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66