genome.fa.s6.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  20  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6723921--6724109	84	2.2	84	79	3	202	38	14	6	40	1.71
6735955--6735987	2	16.5	2	93	0	57	3	0	45	51	1.16
6740575--6740605	2	15.5	2	100	0	62	51	0	0	48	1.00
6740605--6740637	2	17.0	2	93	6	59	51	0	48	0	1.00
6761942--6762008	30	2.2	31	89	7	102	22	14	28	34	1.94
6761942--6762034	30	3.0	30	80	12	75	25	16	24	33	1.96
6762004--6762087	35	2.4	35	88	6	116	28	10	26	34	1.90
6771773--6771812	20	2.0	20	95	0	71	27	10	20	42	1.83
6772523--6772659	35	3.9	35	81	1	141	31	18	24	25	1.98
6783298--6783485	81	2.3	81	79	1	216	30	18	27	22	1.97
6785184--6785303	35	3.5	35	73	8	88	21	12	39	26	1.89
6785477--6785692	74	2.9	74	88	0	306	23	24	22	30	1.99
6787696--6788049	31	11.4	30	79	5	330	29	33	10	26	1.90
6787339--6787734	107	3.7	107	82	3	363	29	28	16	25	1.97
6787665--6787911	62	4.0	62	83	5	230	29	34	10	25	1.89
6787696--6788035	62	5.5	62	82	1	376	29	33	10	26	1.90
6788912--6788989	21	3.7	21	75	3	77	25	24	25	24	2.00
6788936--6789092	42	3.7	43	75	8	146	30	21	20	27	1.98
6789269--6789314	21	2.2	21	88	0	65	23	21	2	52	1.58
6789869--6789915	22	2.1	22	100	0	94	46	21	4	27	1.69
6791996--6792024	2	14.5	2	100	0	58	48	0	0	51	1.00
6794646--6794688	21	2.0	21	82	8	52	25	25	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6795353--6795547	23	8.7	22	73	7	151	36	20	12	31	1.89
6795367--6795525	44	3.6	44	83	3	185	38	18	11	30	1.87
6798536--6798573	19	2.0	19	100	0	76	42	31	0	26	1.56
6801611--6801785	68	2.6	66	78	8	185	35	20	8	36	1.83
6802820--6802847	13	2.2	13	100	0	56	46	7	7	39	1.59
6804781--6804806	13	2.0	13	100	0	52	23	0	0	76	0.78
6807050--6807087	16	2.4	17	86	8	53	42	0	5	52	1.24
6808338--6808411	36	2.1	36	97	0	139	50	16	8	25	1.72
6808346--6808424	36	2.2	36	86	6	108	48	17	6	27	1.72
6814932--6815000	30	2.3	30	87	2	95	37	17	14	30	1.90
6816240--6816291	26	2.0	25	85	3	68	55	0	0	44	0.99
6816355--6816396	17	2.4	18	84	8	59	52	16	0	30	1.44
6844037--6844076	19	2.1	19	95	0	71	47	12	10	30	1.74
6849883--6849933	23	2.2	23	82	6	59	29	5	39	25	1.79
6849894--6849950	23	2.5	23	85	0	69	28	7	36	28	1.83
6850051--6850229	92	1.9	91	91	4	288	29	12	31	26	1.92
6850082--6850202	23	5.3	23	65	11	68	28	11	33	25	1.91
6850082--6850231	46	3.3	46	72	17	157	30	12	32	25	1.92
6850274--6850331	23	2.5	23	82	0	71	34	10	32	22	1.88
6850128--6850597	208	2.3	208	89	1	694	29	14	33	23	1.94
6850567--6850628	23	2.7	23	80	14	74	24	20	32	22	1.98
6850128--6850597	104	4.5	104	77	2	462	29	14	33	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6851077--6851251	55	3.2	55	83	3	190	12	12	31	44	1.79
6851077--6851276	110	1.8	110	80	0	238	12	13	31	43	1.81
6851272--6851327	23	2.4	23	84	0	67	30	25	23	21	1.99
6854595--6854744	81	1.9	81	83	5	196	20	18	30	30	1.97
6854595--6854765	81	2.1	81	80	4	193	21	17	30	29	1.96
6856352--6856469	53	2.2	53	90	0	182	21	35	21	22	1.96
6856239--6856585	168	2.1	169	84	4	441	24	30	20	24	1.99
6856425--6856646	119	1.9	117	88	3	338	25	31	19	23	1.98
6856516--6856732	88	2.5	87	84	3	276	27	30	17	24	1.97
6856556--6856739	86	2.1	87	85	6	246	28	32	15	23	1.95
6856610--6856831	117	1.9	117	88	0	336	27	30	17	25	1.97
6856665--6856763	31	3.2	31	78	2	92	29	29	16	25	1.96
6856727--6857003	86	3.2	85	94	0	464	24	33	19	22	1.97
6856416--6857154	203	3.6	201	80	7	784	25	31	19	23	1.98
6856983--6857052	31	2.3	31	85	5	88	22	28	20	28	1.98
6856893--6857142	117	2.1	117	93	0	428	24	31	19	24	1.98
6858065--6858112	15	3.4	14	77	11	53	58	2	2	37	1.22
6861750--6862523	31	24.8	31	85	3	955	39	18	16	25	1.91
6864009--6864052	22	2.0	21	82	4	52	59	4	6	29	1.44
6867508--6867563	29	1.9	29	96	0	103	37	23	12	26	1.90
6869308--6869383	40	1.9	40	81	10	93	38	11	5	44	1.64
6873422--6873451	15	1.9	16	93	6	53	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6878608--6878639	11	2.9	11	95	0	55	62	0	12	25	1.30
6887296--6887490	84	2.3	86	80	6	229	27	15	13	43	1.85
6887298--6887490	42	4.6	41	78	6	156	27	16	12	43	1.84
6895105--6895208	35	3.0	35	81	2	120	44	21	15	19	1.87
6897677--6897870	96	2.0	97	92	2	327	55	16	7	20	1.66
6900898--6901010	48	2.4	48	87	0	154	59	17	10	12	1.61
6912885--6912929	22	2.0	22	82	0	54	57	6	15	20	1.60
6913487--6913562	35	2.2	34	81	6	82	32	21	10	35	1.87
6927251--6927275	12	2.1	12	100	0	50	40	12	32	16	1.84
6929351--6929387	2	18.5	2	100	0	74	51	0	0	48	1.00
6943712--6943740	2	15.0	2	92	7	51	48	0	0	51	1.00
6944624--6944678	24	2.2	26	78	12	62	34	3	1	60	1.25
6944604--6944659	28	2.0	28	85	3	76	32	1	1	64	1.14
6944648--6944765	38	3.1	37	69	20	100	35	6	1	55	1.37
6944672--6944711	17	2.3	19	79	16	50	35	2	0	62	1.09
6944638--6944783	75	1.9	75	87	4	206	35	5	2	56	1.34
6944643--6944800	75	2.1	73	83	10	194	35	5	1	56	1.34
6945080--6945131	15	3.5	15	74	12	54	26	3	0	69	1.06
6946589--6946630	2	21.5	2	95	4	77	50	0	0	50	1.00
6949790--6949882	42	2.2	43	86	1	125	25	17	33	23	1.96
6952201--6952269	35	2.0	35	88	0	102	34	17	33	14	1.90
6953263--6953307	2	22.5	2	95	0	81	51	46	0	2	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6953556--6953591	19	1.9	19	88	5	56	44	19	2	33	1.65
6965878--6965916	20	1.9	21	85	15	55	30	5	2	61	1.31
6967199--6967279	31	2.6	31	86	7	103	25	17	6	50	1.69
6967375--6967445	32	2.2	32	78	9	83	23	28	21	26	1.99
6968671--6968972	47	6.4	47	83	0	372	26	16	35	21	1.94
6968671--6968972	140	2.1	141	83	3	376	26	16	35	21	1.94
6968888--6968969	24	3.5	24	66	21	64	28	17	35	19	1.94
6968960--6969059	53	1.9	53	89	2	157	23	22	29	26	1.99
6969546--6970057	31	16.5	31	82	4	505	24	16	19	38	1.92
6969546--6970026	93	5.2	93	91	0	730	23	16	19	39	1.92
6971696--6972177	156	3.1	156	86	1	655	34	18	20	27	1.96
6971734--6972172	155	2.8	155	87	2	630	34	19	20	26	1.96
6972533--6972889	31	11.5	30	69	9	128	21	19	18	40	1.92
6972533--6972700	62	2.7	62	80	8	189	21	18	20	39	1.92
6972588--6972714	62	2.0	62	83	5	159	18	18	18	43	1.89
6972685--6972829	62	2.3	62	89	0	209	20	22	16	40	1.91
6972592--6972861	93	2.9	93	80	3	249	20	20	18	41	1.91
6972685--6972894	62	3.4	62	82	2	172	21	21	17	40	1.92
6974370--6974427	14	3.9	15	80	14	52	29	12	5	53	1.59
6974377--6974437	14	4.1	15	75	8	54	31	13	6	49	1.67
6975101--6975398	31	9.7	31	76	3	235	21	18	20	39	1.92
6975102--6975398	61	4.8	62	79	5	262	21	18	20	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6975101--6975398	92	3.2	93	80	6	291	21	18	20	39	1.92
6978881--6978962	31	2.6	31	84	0	92	31	21	18	28	1.97
6978943--6979024	23	3.6	23	79	0	101	20	30	20	28	1.98
6979063--6979240	55	3.2	55	80	3	169	41	33	14	11	1.82
6982143--6982207	34	1.9	34	90	0	103	44	12	12	30	1.79
6992756--6992965	35	5.9	36	76	2	201	35	5	14	43	1.70
6992756--6992967	71	3.0	71	82	5	275	35	5	14	44	1.69
6992756--6992965	107	2.0	107	80	3	244	35	5	14	43	1.70
6994063--6994172	35	3.2	33	75	14	109	30	7	25	37	1.83
6994029--6994219	67	2.8	67	82	7	201	27	7	25	39	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66