genome.fa.s6.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  18  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6156251--6156391	42	3.4	42	88	0	210	21	21	31	24	1.98
6158201--6158293	34	2.8	32	76	12	89	32	24	15	27	1.95
6166252--6166311	29	2.0	29	90	3	93	68	3	3	25	1.20
6166560--6166634	12	6.4	11	74	18	62	73	1	2	22	1.04
6166548--6166609	21	3.0	21	75	15	67	75	0	3	20	0.94
6166595--6166626	17	1.9	16	93	6	55	68	0	0	31	0.90
6166639--6166689	25	2.0	26	84	3	68	43	11	5	39	1.66
6169636--6169706	30	2.3	29	80	17	74	71	5	5	16	1.24
6172759--6172817	19	3.0	20	79	13	70	66	0	18	15	1.26
6174492--6174886	140	2.8	140	89	2	587	27	22	15	35	1.94
6175052--6175102	21	2.5	21	87	3	68	33	27	11	27	1.92
6175171--6175250	25	3.2	24	81	11	99	82	15	0	2	0.77
6175170--6175248	36	2.3	34	84	8	97	82	15	0	2	0.78
6175169--6175250	31	2.7	30	87	7	105	82	14	0	2	0.76
6175170--6175248	5	15.8	5	79	10	81	82	15	0	2	0.78
6175392--6175441	21	2.4	21	83	9	68	78	2	6	14	1.03
6175386--6175443	14	3.9	15	80	15	59	77	1	6	13	1.05
6177169--6177250	6	14.2	6	69	12	55	73	2	0	24	0.96
6177180--6177269	3	31.7	3	71	16	50	74	1	1	23	0.95
6177179--6177272	12	8.4	11	73	12	75	74	1	1	23	0.95
6177153--6177269	34	3.4	32	76	18	112	72	1	2	23	1.06
6177183--6177270	37	2.3	40	84	11	114	75	1	1	22	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6177213--6177271	10	6.2	9	75	16	57	77	0	1	20	0.85
6177180--6177271	27	3.2	28	84	7	123	75	1	1	22	0.94
6177519--6177558	2	20.0	2	100	0	80	50	0	0	50	1.00
6193140--6193177	19	2.0	19	89	0	58	44	28	0	26	1.54
6193817--6193858	21	2.0	21	90	4	68	23	19	9	47	1.78
6195173--6195228	23	2.4	23	78	0	58	33	1	1	62	1.16
6199778--6199899	62	2.0	62	93	0	208	30	18	15	35	1.92
6200684--6200871	93	2.0	93	88	4	281	26	20	13	39	1.89
6201734--6201778	19	2.3	19	96	3	81	53	8	13	24	1.68
6204231--6204277	22	2.1	22	88	0	67	17	10	29	42	1.82
6205106--6205162	22	2.6	22	100	0	114	29	7	22	40	1.80
6205621--6205660	21	1.9	21	84	0	53	25	10	25	40	1.86
6214117--6214591	23	20.7	23	70	3	211	32	23	12	31	1.92
6214140--6214503	69	5.3	69	76	9	314	33	23	11	31	1.91
6216783--6216833	12	4.2	12	79	0	66	41	19	31	7	1.80
6218543--6218607	23	2.9	22	74	2	58	44	23	7	24	1.79
6218669--6218743	23	3.3	23	80	0	87	38	29	13	18	1.89
6228176--6228212	2	18.5	2	100	0	74	48	0	0	51	1.00
6228267--6228358	42	2.2	41	84	7	114	25	31	17	26	1.97
6233201--6233308	36	3.0	36	77	0	117	29	10	25	35	1.89
6233215--6233311	36	2.7	36	80	0	122	30	11	22	35	1.90
6233217--6233348	36	3.7	36	77	0	93	33	11	20	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6237374--6237494	50	2.4	50	81	1	136	29	17	18	34	1.94
6237915--6237998	24	3.5	24	93	0	141	30	25	5	38	1.80
6238537--6238579	2	22.5	2	90	9	72	51	0	0	48	1.00
6242690--6242723	13	2.5	14	90	4	52	67	0	0	32	0.91
6242697--6242726	15	2.0	15	93	0	51	70	0	0	30	0.88
6244615--6244643	13	2.1	14	93	6	51	55	10	20	13	1.68
6253229--6253310	39	2.1	40	90	2	130	20	20	23	35	1.96
6259580--6259623	22	2.0	22	90	0	70	29	9	22	38	1.85
6274028--6274158	42	3.1	42	88	2	183	31	17	27	23	1.97
6274028--6274204	84	2.1	85	80	3	196	29	16	29	23	1.97
6274028--6274174	42	3.5	41	86	3	134	31	18	26	23	1.97
6276314--6276439	43	2.9	42	81	5	144	26	17	32	23	1.97
6280948--6280981	10	3.4	10	87	0	50	38	0	8	52	1.33
6287706--6288165	233	2.0	232	86	3	649	35	23	8	33	1.84
6288677--6288722	2	23.0	2	100	0	92	50	0	0	50	1.00
6288783--6288856	2	38.5	2	82	8	91	51	0	0	48	1.00
6290112--6290154	21	2.0	21	86	9	59	4	6	6	81	0.98
6290776--6290816	12	3.3	12	82	3	55	48	4	2	43	1.37
6298486--6298511	3	8.7	3	100	0	52	69	0	0	30	0.89
6304721--6304755	15	2.5	13	83	16	52	11	5	25	57	1.56
6304725--6304754	15	2.0	15	100	0	60	13	6	26	53	1.64
6304799--6304831	17	1.9	17	93	0	57	33	21	6	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6304912--6305410	26	21.1	26	71	16	236	24	13	25	37	1.91
6305022--6305242	65	3.2	69	81	7	261	23	13	28	35	1.92
6304969--6305314	160	2.1	160	85	6	453	23	13	27	35	1.92
6305215--6305263	21	2.3	21	89	0	71	20	14	28	36	1.92
6305138--6305314	94	1.9	94	95	0	318	22	13	27	36	1.92
6305273--6305415	23	6.1	23	84	7	146	26	13	25	34	1.93
6306493--6306537	15	3.0	15	90	0	72	31	31	8	28	1.88
6316371--6316420	21	2.5	20	83	9	57	62	8	0	30	1.24
6320862--6321018	53	3.0	53	94	0	269	42	15	15	26	1.87
6320862--6321057	106	1.8	105	84	7	259	41	14	15	28	1.87
6321476--6321521	20	2.3	20	88	7	67	32	4	17	45	1.68
6321566--6321618	28	1.9	27	88	3	79	30	18	22	28	1.98
6321566--6321624	28	2.1	28	84	6	75	30	20	23	25	1.98
6324128--6324215	26	3.4	26	73	14	92	37	10	14	37	1.81
6324177--6324226	26	1.9	26	87	0	73	44	8	14	34	1.74
6343873--6344061	68	2.8	68	78	7	181	34	18	10	36	1.84
6351074--6351124	23	2.2	23	85	0	66	25	7	39	27	1.83
6351084--6351128	23	2.0	23	95	0	81	24	13	37	24	1.91
6351101--6351246	58	2.5	58	87	0	193	29	15	30	23	1.96
6351207--6351553	47	7.4	47	81	2	319	28	17	29	24	1.97
6351202--6351553	141	2.5	140	80	3	386	28	17	29	25	1.97
6351202--6351553	94	3.8	93	78	4	352	28	17	29	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6352179--6352411	31	7.5	31	93	1	380	25	15	18	39	1.91
6352179--6352411	123	1.9	124	91	2	389	25	15	18	39	1.91
6353818--6354089	145	1.9	145	85	1	384	29	21	19	30	1.97
6356284--6356353	31	2.3	31	92	0	122	22	34	15	27	1.95
6356488--6356656	31	5.7	31	69	16	90	30	28	19	20	1.97
6356245--6356557	117	2.7	117	85	2	423	27	30	20	22	1.98
6356428--6356647	86	2.5	86	87	4	293	28	29	20	20	1.98
6356330--6356759	204	2.1	203	90	0	671	29	30	19	21	1.98
6356515--6356883	117	3.1	117	85	3	501	29	29	19	21	1.98
6356722--6356968	86	2.9	86	83	6	225	27	27	21	23	1.99
6356326--6357200	321	2.7	322	89	1	1369	29	28	19	22	1.98
6356777--6356968	86	2.2	86	89	1	287	27	27	22	22	1.99
6356668--6357083	205	2.0	204	89	0	625	28	28	20	21	1.98
6356854--6357235	117	3.3	116	84	2	460	29	28	18	23	1.98
6361114--6361241	31	4.1	31	87	0	184	40	17	14	27	1.88
6361114--6361241	62	2.1	62	92	0	211	40	17	14	27	1.88
6361599--6361722	63	2.0	63	90	0	194	33	15	32	19	1.93
6362674--6362885	107	2.0	106	88	2	318	50	16	8	24	1.73
6366668--6366738	22	3.3	22	84	4	99	19	12	26	40	1.88
6366668--6366746	22	3.6	22	81	3	97	21	11	24	43	1.85
6366757--6366861	23	4.6	23	87	0	138	36	27	12	23	1.91
6366772--6366906	46	3.0	45	80	8	134	34	28	14	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6369630--6369687	23	2.5	23	88	2	80	39	8	12	39	1.73
6369643--6369688	23	2.0	23	95	0	83	34	8	15	41	1.78
6373111--6373172	23	2.7	23	89	2	88	41	8	11	38	1.70
6375601--6375649	2	25.5	2	87	8	75	51	0	0	48	1.00
6375602--6375665	26	2.4	27	81	5	76	51	0	0	48	1.00
6375983--6376025	2	21.5	2	95	0	77	48	2	0	48	1.14
6376059--6376433	197	1.9	195	90	2	590	37	10	5	46	1.61
6382186--6382233	11	4.2	12	73	26	50	68	2	0	29	1.01
6382191--6382235	22	2.0	22	87	8	65	71	2	0	26	0.98
6382403--6382457	26	2.3	23	81	9	65	72	3	1	21	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66