genome.fa.s6.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  29  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9923540--9923583	22	2.0	22	86	0	61	20	15	22	40	1.90
9923765--9923834	25	2.8	25	80	6	72	45	14	28	11	1.79
9924831--9924953	42	2.9	42	90	2	176	21	21	34	22	1.97
9924984--9925042	2	29.0	2	87	3	82	45	1	3	49	1.28
9931350--9931466	43	2.7	43	86	2	155	19	38	17	23	1.93
9934554--9934600	20	2.4	19	83	13	60	44	4	34	17	1.68
9935593--9935624	16	2.0	16	93	0	55	65	18	3	12	1.38
9937587--9937641	20	2.7	21	80	5	67	38	18	12	30	1.88
9952102--9952127	5	5.2	5	100	0	52	38	19	0	42	1.51
9952150--9952177	11	2.5	11	100	0	56	53	14	0	32	1.41
9952171--9952214	22	2.0	22	95	0	79	43	25	4	27	1.74
9954466--9954513	21	2.3	20	79	10	60	14	22	6	56	1.61
9954471--9954511	21	1.9	22	90	5	66	17	24	7	51	1.70
9960978--9961223	42	5.9	41	73	12	191	52	2	2	42	1.26
9960978--9961472	155	3.2	153	82	10	571	53	3	2	40	1.30
9961322--9961372	26	2.0	25	85	11	68	50	3	7	37	1.50
9961466--9961499	10	3.3	11	88	12	54	73	0	0	26	0.83
9961412--9961492	26	2.9	28	71	23	64	64	3	0	32	1.11
9968661--9968708	20	2.4	20	96	0	87	45	33	12	8	1.72
9968728--9968785	30	2.0	29	83	10	73	34	20	22	22	1.97
9970300--9970342	2	21.5	2	95	0	77	51	2	0	46	1.13
9970367--9970580	35	6.0	35	87	5	302	29	31	8	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9970367--9970580	73	2.9	73	91	0	340	29	31	8	29	1.87
9970396--9970593	108	1.8	110	90	2	319	29	32	7	30	1.84
9971164--9971214	20	2.5	20	96	0	93	1	33	0	64	1.05
9979460--9979494	11	3.3	11	88	8	54	0	22	11	65	1.24
9984004--9984047	22	2.0	22	90	0	70	43	20	2	34	1.64
9988394--9988470	39	1.9	40	81	5	93	31	9	24	35	1.87
9988442--9988527	36	2.4	37	76	5	95	30	11	24	33	1.91
9988668--9988696	14	2.0	15	93	6	51	20	10	0	68	1.18
9993686--9993727	21	2.0	21	82	17	52	42	7	16	33	1.75
9995125--9995225	35	3.0	34	76	8	116	26	12	24	35	1.92
9995098--9995252	67	2.3	68	81	4	195	27	12	24	34	1.92
9995115--9995215	32	3.1	32	75	8	112	24	12	23	38	1.90
9995115--9995247	67	2.0	68	87	1	196	26	13	24	35	1.93
9999480--9999521	2	21.0	2	100	0	84	50	0	0	50	1.00
10009404--10009443	2	19.5	2	94	5	71	50	0	2	47	1.14
10009542--10009577	2	18.0	2	100	0	72	50	0	0	50	1.00
10009602--10009829	61	3.7	61	89	0	321	24	16	31	28	1.96
10017865--10017893	14	2.0	15	93	6	51	48	10	20	20	1.79
10020229--10020277	2	24.0	2	81	4	53	48	2	6	42	1.39
10021487--10021513	13	2.1	13	100	0	54	48	7	0	44	1.31
10024445--10024557	43	2.6	43	85	2	147	23	19	37	20	1.95
10032306--10032346	21	1.9	22	90	5	66	56	7	19	17	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10032304--10032351	21	2.3	20	79	10	60	60	6	18	14	1.55
10032305--10032352	22	2.2	21	81	3	60	62	6	16	14	1.51
10038292--10038401	35	3.2	35	73	7	109	27	11	24	36	1.90
10038270--10038418	67	2.2	68	87	2	210	28	12	24	34	1.91
10039616--10039666	27	1.9	25	84	11	66	66	13	15	3	1.39
10039956--10040042	36	2.4	36	76	3	95	35	16	18	29	1.92
10044994--10045023	9	3.2	9	95	4	51	13	0	0	86	0.57
10044994--10045026	17	2.0	17	94	5	59	15	0	0	84	0.61
10044996--10045027	10	3.3	10	95	4	57	18	0	0	81	0.70
10045639--10045694	29	1.9	29	81	0	67	35	10	0	53	1.36
10046012--10046055	22	2.0	22	81	4	52	50	6	0	43	1.29
10061305--10061371	29	2.3	30	89	2	100	49	17	7	25	1.73
10069559--10069595	11	3.4	11	88	0	56	56	0	0	43	0.99
10078967--10079419	231	2.0	231	87	3	653	37	15	18	29	1.91
10091103--10091158	25	2.2	26	80	6	69	60	12	23	3	1.47
10101372--10101396	2	12.5	2	100	0	50	0	0	48	52	1.00
10128536--10128564	13	2.1	14	93	6	51	0	27	0	72	0.85
10128531--10128562	16	1.9	17	93	6	57	0	28	0	71	0.86
10135545--10135602	26	2.2	26	90	6	91	25	24	15	34	1.95
10139328--10139401	34	2.1	35	82	7	89	35	28	8	28	1.86
10139635--10139676	13	3.2	13	77	12	50	0	19	0	80	0.70
10139633--10139672	6	6.3	6	83	11	53	0	17	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10139633--10139672	19	2.1	19	86	9	55	0	17	0	82	0.67
10139695--10139765	24	3.0	23	75	17	65	5	32	0	61	1.19
10140107--10140152	20	2.3	20	96	0	83	28	4	21	45	1.71
10140197--10140249	28	1.9	28	88	3	81	30	20	22	26	1.98
10142920--10142956	12	3.2	12	85	14	51	21	0	0	78	0.75
10142918--10142948	15	2.0	16	93	6	55	25	0	0	74	0.82
10168325--10168390	27	2.5	26	83	11	82	10	4	4	80	1.00
10168343--10168383	18	2.2	19	86	4	57	14	2	7	75	1.12
10168328--10168396	8	8.1	8	76	17	59	10	2	5	81	0.97
10168733--10168795	27	2.4	27	87	10	87	38	3	20	38	1.69
10178052--10178464	205	2.0	207	92	2	697	39	19	13	26	1.89
10179759--10180007	126	2.0	126	93	1	428	34	8	19	37	1.82
10197472--10197509	14	2.5	15	87	8	51	73	2	0	23	0.95
10198134--10198165	16	2.0	16	93	0	55	81	15	0	3	0.82
10200158--10200214	30	1.9	29	92	3	96	42	10	0	47	1.38
10203835--10203888	28	1.9	28	88	7	83	61	9	1	27	1.37
10206784--10206902	32	3.6	32	73	14	107	33	23	14	28	1.94
10206770--10206941	67	2.6	67	85	3	213	34	23	12	28	1.92
10206814--10206923	35	3.2	34	77	10	118	31	24	13	30	1.94
10207564--10207924	180	2.0	179	95	0	641	36	14	12	36	1.84
10215827--10216030	73	2.8	70	82	8	221	34	18	22	24	1.96
10220210--10220379	85	2.0	84	90	1	268	49	10	17	22	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10224849--10224906	30	1.9	30	86	6	82	39	12	3	44	1.58
10225533--10225575	11	3.8	11	79	14	52	72	0	18	9	1.11
10225532--10225575	22	2.0	22	90	0	70	72	0	18	9	1.10
10228503--10228709	108	1.9	108	84	0	279	22	19	14	42	1.88
10232125--10232160	2	18.0	2	100	0	72	50	0	50	0	1.00
10232228--10232263	2	18.0	2	100	0	72	50	0	50	0	1.00
10233769--10233823	21	2.7	20	71	20	51	50	1	1	45	1.22
10246855--10246888	17	2.1	17	88	5	52	52	0	8	38	1.33
10247040--10247087	21	2.2	22	85	10	64	72	2	22	2	1.05
10248253--10248340	40	2.2	40	93	0	149	30	26	18	25	1.98
10249811--10249839	15	1.9	15	100	0	58	48	13	6	31	1.69
10250867--10251138	135	2.0	135	97	0	517	36	13	18	31	1.90
10255167--10255216	25	2.0	25	100	0	100	32	32	12	24	1.91
10256697--10256764	14	5.1	13	70	22	52	0	32	1	66	1.01
10256726--10256768	15	2.7	15	85	7	50	0	34	0	65	0.93
10282505--10282624	58	2.1	57	95	1	213	36	9	16	37	1.81
10314360--10314486	42	2.9	42	79	14	125	51	0	0	47	1.12
10314446--10314520	27	2.8	26	80	9	80	57	0	0	42	0.98
10314928--10314972	20	2.2	20	88	7	65	31	15	6	46	1.72
10315109--10315149	20	2.0	20	86	9	57	53	7	2	36	1.42
10315633--10315661	2	14.5	2	100	0	58	51	0	0	48	1.00
10315891--10316040	75	2.0	76	85	6	207	48	15	2	34	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10327592--10327646	3	18.3	3	88	0	83	34	34	0	30	1.58
10328211--10328244	17	2.1	16	88	5	50	41	2	47	8	1.50
10328378--10328412	3	12.3	3	88	11	56	28	0	0	71	0.86
10329496--10329532	18	2.0	19	89	5	58	48	5	2	43	1.40
10330237--10330312	2	39.5	2	81	17	81	46	0	3	48	1.20
10330219--10330305	40	2.2	39	84	11	124	41	0	8	49	1.32
10330688--10330748	10	5.6	10	73	17	50	39	1	13	45	1.53
10331427--10331470	21	2.0	21	82	8	52	52	22	2	22	1.58
10356261--10356337	28	2.7	29	80	9	97	40	10	12	36	1.78
10356317--10356357	21	2.0	21	90	9	66	36	9	17	36	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66