genome.fa.s6.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  44  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15894973--15894997	13	1.9	13	100	0	50	44	0	8	48	1.32
15900866--15900912	23	2.0	23	91	0	76	63	6	8	21	1.44
15905367--15905450	25	3.3	25	76	3	87	38	14	8	39	1.76
15905300--15905425	26	4.9	26	77	1	119	30	21	11	36	1.89
15905341--15905461	51	2.4	51	85	1	154	33	19	9	37	1.84
15905390--15905461	25	2.8	25	75	6	74	33	18	8	40	1.80
15905982--15906028	23	2.0	23	87	0	67	59	8	10	21	1.57
15906463--15906506	2	22.0	2	100	0	88	50	0	0	50	1.00
15906777--15907069	147	2.0	146	100	0	577	36	17	6	39	1.76
15907064--15907368	95	3.3	91	76	14	288	27	20	12	38	1.90
15908407--15908598	95	2.0	94	86	1	267	35	13	19	31	1.90
15910692--15910721	2	15.0	2	100	0	60	50	0	0	50	1.00
15914062--15914270	104	2.0	104	91	0	337	33	23	11	30	1.91
15920135--15920232	12	7.5	13	74	20	71	0	26	0	73	0.83
15920150--15920230	4	20.8	4	80	16	91	0	27	0	72	0.84
15920324--15920365	20	2.0	22	86	9	61	7	21	0	71	1.09
15924524--15924556	17	1.9	17	93	0	57	51	0	18	30	1.46
15925019--15925052	17	2.1	16	88	5	50	8	8	5	76	1.15
15927457--15927506	6	8.3	6	97	0	82	50	28	0	22	1.49
15938622--15938674	28	1.9	27	88	3	79	28	22	18	30	1.98
15938719--15938764	20	2.3	20	96	0	83	45	21	4	28	1.71
15941217--15941241	5	5.0	5	100	0	50	80	0	0	20	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15942094--15942142	2	25.0	2	87	4	73	0	46	0	53	1.00
15942201--15942248	2	25.0	2	87	8	73	0	47	0	52	1.00
15942092--15942305	106	2.0	106	98	1	412	17	28	14	38	1.89
15949392--15949446	3	18.7	3	88	3	85	67	1	1	29	1.11
15958935--15960060	375	3.0	375	98	0	2164	30	18	15	35	1.93
15976093--15976125	13	2.5	13	95	0	57	21	12	12	54	1.69
15978842--15978923	22	3.8	22	79	6	96	19	9	26	43	1.82
15978935--15979041	23	4.7	23	76	18	73	32	27	14	26	1.94
15978962--15979015	22	2.7	19	78	15	63	31	27	14	25	1.95
15978954--15979207	26	10.8	25	74	17	190	35	26	14	24	1.93
15978981--15979218	73	3.3	71	82	6	293	35	26	14	23	1.93
15979051--15979155	21	4.7	21	72	15	61	32	27	16	23	1.96
15979074--15979181	47	2.3	47	90	4	164	34	26	13	25	1.93
15978954--15979134	95	1.9	93	85	3	240	33	27	14	24	1.94
15979200--15979252	21	2.5	21	82	11	72	37	22	15	24	1.92
15979186--15979263	21	3.6	22	68	13	63	41	19	15	24	1.90
15982674--15982764	33	2.8	33	82	0	119	36	38	4	20	1.73
15986467--15986505	20	2.0	20	84	0	51	41	7	25	25	1.82
15986577--15986628	22	2.4	22	100	0	104	30	13	0	55	1.38
15987452--15987514	27	2.3	28	75	5	67	30	20	26	22	1.98
15987594--15987669	13	6.0	13	77	14	63	75	0	3	21	0.97
15987605--15987669	14	4.5	15	71	24	59	73	0	3	23	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15987595--15987662	28	2.4	27	83	13	77	76	0	4	19	0.95
15987603--15987668	22	3.0	22	76	8	73	75	0	3	21	0.93
15998296--15998352	17	3.2	18	85	14	75	68	0	0	31	0.90
15999766--15999867	43	2.4	43	91	0	168	39	12	16	31	1.86
15999774--15999846	24	3.2	24	62	18	66	41	12	13	32	1.82
16002178--16002271	43	2.2	43	84	3	118	41	17	17	24	1.89
16002791--16002905	43	2.7	43	77	5	126	37	15	19	27	1.92
16002937--16003074	43	3.2	43	77	2	125	38	13	16	31	1.87
16002760--16003094	171	2.0	171	85	1	456	35	16	16	31	1.91
16004284--16004326	19	2.3	19	88	8	61	69	11	11	6	1.35
16005350--16005390	13	3.2	12	83	10	55	0	17	2	80	0.82
16021751--16021792	21	2.0	21	85	0	57	54	0	2	42	1.13
16028647--16028691	23	2.0	23	81	0	54	33	20	2	44	1.63
16032725--16032810	29	3.0	29	81	6	104	47	15	11	25	1.79
16033344--16033419	20	3.8	20	72	19	77	56	3	0	39	1.18
16033550--16033672	63	1.9	64	81	1	149	39	7	11	41	1.69
16043542--16043588	15	3.1	15	84	6	60	46	12	0	40	1.42
16043548--16043595	15	3.3	15	85	11	64	47	8	0	43	1.33
16048215--16048329	60	1.9	58	98	1	212	43	8	8	38	1.67
16051014--16051067	25	2.2	25	90	6	83	40	27	5	25	1.78
16053051--16053209	85	1.9	85	88	2	239	21	8	13	57	1.62
16061619--16061650	13	2.5	13	94	0	55	28	6	15	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16061718--16061917	87	2.3	87	85	3	255	41	16	18	24	1.90
16061880--16061910	12	2.6	12	89	0	53	32	25	12	29	1.93
16063129--16063516	76	5.1	76	83	3	433	21	38	13	27	1.90
16071907--16071974	30	2.3	30	89	0	100	50	5	29	14	1.67
16071961--16071995	18	1.9	18	88	11	54	51	2	31	14	1.57
16072710--16072767	21	2.8	20	78	19	66	37	1	8	51	1.43
16080815--16080877	3	21.7	3	78	12	69	25	3	0	71	1.01
16081007--16081063	16	3.2	16	69	21	51	19	5	15	59	1.55
16081016--16081085	20	3.7	20	75	11	83	18	5	15	60	1.55
16081006--16081080	37	2.0	37	100	0	150	18	5	16	60	1.54
16082418--16082460	20	2.2	20	86	0	59	23	2	6	67	1.27
16087474--16087530	21	2.6	22	80	5	71	22	10	21	45	1.82
16087564--16087835	26	11.2	25	76	12	198	36	25	12	25	1.91
16087627--16087835	52	4.2	51	77	13	220	37	24	12	25	1.90
16100032--16100069	2	19.0	2	94	0	67	52	0	47	0	1.00
16100030--16100074	10	4.4	10	91	2	63	55	0	42	2	1.12
16101295--16101348	25	2.2	25	86	6	74	48	11	3	37	1.57
16101750--16101790	12	3.4	12	93	0	64	65	4	0	29	1.13
16105286--16105318	17	1.9	17	88	11	50	63	0	36	0	0.95
16106067--16106123	15	3.9	14	78	14	62	50	0	0	47	1.01
16106145--16106180	18	2.0	18	89	10	56	44	2	0	52	1.15
16113185--16113253	3	23.0	3	84	0	84	36	2	1	59	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16114010--16114050	2	20.5	2	100	0	82	48	0	0	51	1.00
16115130--16115166	5	7.8	5	85	11	51	54	0	0	45	1.00
16115130--16115166	19	1.9	19	94	0	65	54	0	0	45	1.00
16116388--16116504	60	2.0	60	91	0	189	22	31	20	25	1.98
16118302--16118439	35	3.9	35	83	0	177	46	13	6	33	1.69
16118302--16118439	70	2.0	71	88	1	206	46	13	6	33	1.69
16119044--16119299	35	7.3	35	83	3	284	44	12	6	36	1.69
16119043--16119292	71	3.6	70	84	3	308	44	12	6	36	1.69
16119030--16119299	142	1.9	138	87	3	387	43	12	6	37	1.68
16124952--16125126	60	3.0	60	80	5	203	25	30	16	28	1.97
16126041--16126123	35	2.4	35	89	0	121	26	43	9	20	1.82
16126058--16126180	35	3.5	34	75	13	117	27	41	4	26	1.76
16131175--16131273	19	5.1	19	66	9	74	20	17	41	21	1.90
16131171--16131273	38	2.6	40	87	6	149	19	16	41	22	1.90
16142622--16142673	24	2.2	24	82	0	59	44	13	19	23	1.86
16145961--16145990	2	14.5	2	93	6	51	3	0	46	50	1.18
16154674--16154805	27	5.0	27	77	7	135	15	36	25	23	1.93
16159393--16159468	39	1.9	40	83	2	100	13	17	25	44	1.84
16160186--16160369	93	1.9	95	93	3	318	36	15	20	27	1.92
16160568--16160594	14	1.9	14	100	0	54	37	7	11	44	1.68
16162870--16162986	27	4.3	27	74	6	103	14	35	25	23	1.93
16162870--16162976	54	2.0	54	84	0	142	14	35	25	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16165137--16165170	17	2.0	17	88	0	50	8	26	8	55	1.59
16173790--16173836	21	2.2	22	92	3	78	40	19	17	23	1.91
16175291--16175375	28	2.9	30	78	7	93	63	7	1	28	1.28
16175296--16175375	29	2.7	30	82	7	101	65	7	1	26	1.27
16175295--16175381	41	2.1	40	85	8	113	67	6	1	24	1.22
16175648--16175700	8	6.8	8	80	2	54	26	45	0	28	1.54
16175648--16175700	16	3.4	16	78	2	63	26	45	0	28	1.54
16180048--16180082	17	2.1	17	94	0	61	14	11	45	28	1.79
16185162--16185215	23	2.3	23	93	0	90	29	40	5	24	1.77
16185210--16185341	43	3.1	43	77	6	124	22	37	17	22	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66