genome.fa.s6.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  51  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18422174--18422331	79	2.0	79	98	0	307	33	16	20	29	1.94
18427509--18427536	2	14.0	2	100	0	56	50	0	0	50	1.00
18427566--18427593	2	14.0	2	100	0	56	50	0	0	50	1.00
18429889--18430172	147	2.0	146	80	4	324	41	5	30	21	1.76
18431203--18431495	145	2.0	146	97	0	561	24	15	19	40	1.90
18434293--18434320	3	9.3	3	100	0	56	32	35	0	32	1.58
18435780--18435836	22	2.5	23	85	5	80	64	0	0	35	0.93
18437149--18437200	21	2.5	21	96	0	95	50	17	5	26	1.69
18449634--18449673	2	20.0	2	100	0	80	50	0	0	50	1.00
18450082--18450107	2	13.0	2	100	0	52	50	0	0	50	1.00
18459298--18459358	29	2.2	29	88	5	90	37	6	8	47	1.59
18459606--18459675	27	2.5	28	79	4	70	50	8	7	34	1.61
18460791--18460871	38	2.2	37	84	2	99	38	3	16	41	1.66
18461008--18461059	22	2.4	22	84	9	63	48	17	5	28	1.70
18461008--18461080	21	3.5	20	78	10	74	47	15	6	30	1.71
18465669--18465708	20	2.0	21	85	5	55	25	10	0	65	1.24
18465895--18465924	6	5.0	6	100	0	60	16	16	33	33	1.92
18479707--18479795	26	3.4	26	71	10	83	43	2	2	51	1.26
18481894--18481963	32	2.2	33	89	2	106	41	4	1	52	1.30
18481906--18481977	32	2.2	32	82	7	81	55	4	0	40	1.19
18496920--18496983	33	2.0	33	84	3	85	57	1	1	39	1.17
18498840--18498935	39	2.5	36	75	15	95	48	2	0	48	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18498905--18498939	14	2.4	14	90	4	52	48	0	0	51	1.00
18499408--18499461	25	2.3	23	76	17	56	12	12	14	59	1.62
18499421--18499479	25	2.2	28	88	8	88	13	10	15	61	1.57
18507729--18507785	30	1.9	30	82	10	73	42	0	5	52	1.24
18508662--18508689	2	14.0	2	100	0	56	50	0	0	50	1.00
18519813--18519865	25	2.1	25	100	0	106	18	22	20	37	1.94
18528144--18528223	39	2.1	39	85	0	106	43	8	2	45	1.48
18531650--18531719	15	4.9	15	70	22	60	45	2	1	50	1.25
18531651--18531720	21	3.3	21	74	7	79	47	2	1	48	1.25
18547069--18547102	2	17.0	2	93	0	59	50	2	0	47	1.16
18547502--18547543	10	3.8	11	84	15	52	2	19	0	78	0.86
18549321--18549410	28	3.2	28	83	0	117	38	12	16	32	1.86
18570638--18570681	20	2.1	21	87	4	63	56	0	22	20	1.42
18580173--18580230	20	2.9	20	97	0	107	37	22	13	25	1.91
18587924--18587977	23	2.3	23	83	0	63	27	16	29	25	1.97
18588028--18588093	23	2.9	23	73	8	62	34	16	27	21	1.95
18593043--18593153	31	3.6	31	82	4	134	33	14	16	36	1.89
18595465--18595654	81	2.3	81	81	3	204	24	20	32	22	1.98
18595553--18595738	81	2.3	81	81	3	196	24	19	32	23	1.97
18597057--18597347	76	3.9	76	77	5	256	35	25	16	23	1.95
18600889--18600969	23	3.4	24	87	5	110	37	16	14	32	1.89
18616624--18616702	35	2.2	34	82	10	88	54	10	2	32	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18617758--18617797	3	13.3	3	100	0	80	67	0	0	32	0.91
18618557--18618638	37	2.2	37	84	4	103	28	9	20	41	1.84
18634046--18634123	36	2.2	36	88	2	113	35	11	21	30	1.89
18641277--18641341	30	2.2	30	91	0	103	33	15	36	13	1.87
18652079--18652134	21	2.6	21	88	2	76	51	32	3	12	1.56
18652454--18652512	29	2.0	31	86	6	86	10	22	5	62	1.46
18667861--18667886	13	2.0	13	100	0	52	23	30	7	38	1.83
18677593--18677630	20	1.9	20	100	0	76	44	21	5	28	1.73
18687271--18687302	15	2.3	15	89	10	50	53	6	0	40	1.26
18704279--18704485	43	4.8	43	81	2	132	40	18	9	31	1.83
18704247--18704487	86	2.8	86	78	4	236	39	19	8	32	1.82
18708014--18708128	34	3.3	34	77	11	142	26	18	21	33	1.96
18708019--18708109	37	2.6	35	78	14	107	28	20	18	31	1.97
18708103--18708158	28	2.0	28	89	0	85	25	16	25	33	1.95
18708599--18708690	34	2.7	34	81	0	103	38	21	15	25	1.92
18711095--18711157	30	2.1	30	82	5	74	41	7	11	39	1.70
18711166--18711238	21	3.4	21	75	19	78	21	4	0	73	0.99
18711194--18711257	27	2.4	27	84	10	78	23	4	0	71	1.04
18711351--18711412	31	2.0	32	87	9	92	20	3	0	75	0.94
18711358--18711416	15	3.8	15	71	20	50	23	3	0	72	0.99
18711592--18711628	10	3.6	10	88	3	56	13	0	0	86	0.57
18711945--18711975	14	2.2	14	100	0	62	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18717031--18717179	54	2.7	54	79	6	165	42	16	7	33	1.75
18717151--18717223	29	2.4	32	75	13	89	39	10	13	35	1.80
18717161--18717223	29	2.2	29	88	0	90	39	11	12	36	1.79
18719127--18719177	14	3.3	15	76	13	50	21	3	1	72	1.11
18723056--18723248	35	5.5	35	87	0	233	44	18	16	20	1.87
18723056--18723259	105	1.9	105	84	2	266	43	18	16	21	1.88
18723056--18723283	35	6.5	35	84	2	226	43	18	16	21	1.87
18723056--18723283	105	2.2	105	81	3	262	43	18	16	21	1.87
18724032--18724077	13	3.5	13	83	16	60	19	32	2	45	1.62
18726398--18726472	33	2.3	33	100	0	150	24	16	10	49	1.76
18730876--18730953	37	2.1	38	87	2	113	42	20	6	30	1.77
18735486--18735515	2	15.0	2	92	0	51	50	46	0	3	1.18
18735486--18735520	12	2.9	12	91	0	52	48	42	0	8	1.33
18735518--18735547	2	15.0	2	100	0	60	50	0	0	50	1.00
18735818--18735844	2	13.5	2	100	0	54	51	0	0	48	1.00
18735230--18735812	320	1.8	318	92	0	968	44	10	4	39	1.61
18736959--18736984	7	3.7	7	100	0	52	0	53	0	46	1.00
18736193--18737410	440	2.8	441	94	1	2076	25	18	16	39	1.91
18760020--18760091	9	7.4	9	74	20	56	73	1	0	25	0.91
18760984--18761008	9	2.8	9	100	0	50	84	8	0	8	0.79
18761771--18761859	12	7.9	11	70	19	60	74	0	2	23	0.93
18761784--18761863	3	26.0	3	76	16	58	70	0	2	27	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18761780--18761861	24	3.4	25	77	12	91	71	0	2	25	0.98
18761771--18761862	32	2.7	34	78	13	100	73	0	2	23	0.94
18761771--18761859	29	3.0	31	74	19	84	74	0	2	23	0.93
18778637--18778671	2	17.5	2	100	0	70	51	0	48	0	1.00
18779924--18779994	18	3.9	18	88	0	106	38	18	11	32	1.86
18779924--18779987	9	7.1	9	78	7	76	37	20	10	31	1.87
18779920--18779994	27	2.8	27	80	8	89	38	17	10	33	1.84
18779928--18779994	9	7.4	9	79	0	71	38	17	10	32	1.84
18780257--18780302	18	2.6	18	96	0	83	47	21	10	19	1.80
18780257--18780302	8	5.0	10	77	20	55	47	21	10	19	1.80
18783952--18783984	14	2.4	14	100	0	66	36	15	12	36	1.84
18787373--18787418	2	23.0	2	100	0	92	50	0	0	50	1.00
18791956--18792131	86	2.0	86	96	2	327	49	5	2	42	1.39
18800512--18800541	3	9.7	3	92	7	51	30	0	3	66	1.07
18801726--18801818	3	31.3	3	71	18	54	67	1	0	31	0.98
18801772--18801827	17	3.4	16	79	20	62	71	1	0	26	0.96
18815024--18815326	62	5.0	62	92	1	470	32	11	20	35	1.88
18815634--18815658	11	2.3	11	100	0	50	12	64	0	24	1.27
18815836--18815868	17	1.9	17	93	0	57	75	18	6	0	1.00
18816889--18816924	13	2.8	13	95	0	63	61	2	8	27	1.39
18844261--18844291	13	2.5	12	94	5	53	51	0	32	16	1.44
18844515--18844586	29	2.5	29	74	17	76	48	9	25	16	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18844829--18844951	35	3.5	35	82	0	147	19	17	18	44	1.87
18845215--18845254	21	1.9	21	84	0	53	22	10	10	57	1.61
18846399--18846446	22	2.5	20	81	18	57	22	2	2	72	1.05
18846567--18846611	14	3.2	15	90	6	60	35	0	0	64	0.94
18849868--18850143	102	2.7	102	79	5	290	44	14	19	21	1.86
18851614--18851834	35	6.3	35	80	3	178	20	14	17	47	1.83
18858112--18858167	29	1.9	29	96	0	103	12	23	7	57	1.60
18859242--18859267	13	2.0	13	100	0	52	30	23	0	46	1.53
18862845--18862880	18	2.0	18	100	0	72	16	22	16	44	1.86
18871217--18871460	131	1.9	131	82	5	314	44	9	15	29	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66