genome.fa.s6.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  39  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13727773--13728083	75	4.3	75	79	11	260	28	37	12	20	1.90
13727773--13728084	110	2.9	104	75	16	259	28	38	12	20	1.89
13729777--13729955	67	2.7	66	80	4	225	24	14	26	34	1.94
13736486--13736524	20	2.0	20	89	0	60	38	5	17	38	1.72
13748656--13748832	36	4.7	36	73	12	133	27	37	12	22	1.90
13748696--13748832	35	3.5	42	70	16	132	27	37	13	21	1.91
13748727--13748862	35	3.7	35	73	12	121	25	40	12	21	1.88
13748693--13748868	77	2.3	75	87	3	255	27	39	12	20	1.88
13752537--13752587	7	7.4	7	78	12	61	82	0	15	1	0.76
13752537--13752587	13	3.7	14	80	10	61	82	0	15	1	0.76
13752537--13752587	21	2.5	21	93	3	86	82	0	15	1	0.76
13759599--13759645	20	2.3	21	81	3	60	51	0	8	40	1.33
13761176--13761214	10	3.8	10	80	6	51	51	20	2	25	1.60
13763522--13763694	29	6.0	28	78	9	143	42	8	12	36	1.72
13763833--13763865	17	1.9	17	88	11	50	39	3	15	42	1.62
13768551--13768577	3	9.0	3	100	0	54	33	0	0	66	0.92
13769362--13769402	16	2.6	16	88	0	55	43	26	17	12	1.84
13770664--13770702	18	2.2	18	90	0	60	43	17	7	30	1.77
13779415--13779452	18	2.1	18	100	0	76	39	15	0	44	1.47
13793694--13793768	30	2.6	29	79	14	91	38	2	0	58	1.12
13794846--13794870	7	3.6	7	100	0	50	12	88	0	0	0.53
13797506--13797538	17	2.0	17	88	5	50	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13804831--13804889	27	2.2	27	84	0	73	40	15	6	37	1.74
13805497--13805522	2	13.0	2	100	0	52	50	0	50	0	1.00
13805886--13805933	20	2.4	20	100	0	96	39	4	20	35	1.72
13823389--13823455	27	2.5	27	73	9	64	25	20	32	20	1.97
13823391--13823495	53	2.0	53	83	5	131	24	20	35	19	1.96
13823408--13823518	26	4.2	27	79	7	120	23	24	34	18	1.96
13829295--13829339	19	2.3	20	84	3	56	31	24	28	15	1.96
13829336--13829414	40	2.0	40	94	0	140	34	25	22	17	1.96
13829699--13829830	67	2.0	65	95	1	228	62	6	5	25	1.40
13829699--13829855	67	2.4	67	87	4	160	61	7	5	24	1.43
13831236--13831280	19	2.3	20	92	3	74	31	24	28	15	1.96
13831277--13831355	40	2.0	40	92	0	131	35	25	21	17	1.95
13833126--13833164	2	19.5	2	100	0	78	51	48	0	0	1.00
13838457--13838494	4	9.5	4	100	0	76	76	0	0	23	0.79
13840446--13840642	26	7.5	26	68	11	96	28	22	31	17	1.96
13840620--13840682	26	2.4	26	83	0	81	28	22	30	19	1.98
13848354--13848515	55	2.9	55	86	0	225	26	37	14	21	1.92
13848576--13848617	22	1.9	22	85	9	59	50	11	2	35	1.52
13856516--13856553	2	19.0	2	94	0	67	47	0	2	50	1.15
13859845--13859925	40	2.0	40	97	0	153	13	12	22	51	1.74
13865970--13866046	30	2.6	30	76	13	88	55	1	3	38	1.26
13875322--13875364	2	21.5	2	100	0	86	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13880357--13880467	43	2.6	43	86	0	150	22	16	36	24	1.94
13880476--13880524	23	2.1	23	88	0	71	24	6	38	30	1.80
13887640--13887780	71	2.0	71	90	0	219	29	21	12	36	1.90
13889146--13889209	19	3.4	19	68	8	58	21	17	40	20	1.91
13889142--13889244	38	2.6	40	90	3	156	20	18	38	22	1.93
13891856--13891887	9	3.6	9	91	0	55	28	9	21	40	1.84
13891851--13891887	18	2.1	18	94	0	65	32	10	18	37	1.86
13892381--13892431	25	2.0	25	88	7	77	23	54	0	21	1.44
13896493--13896520	12	2.3	12	100	0	56	46	0	14	39	1.44
13909088--13909162	36	2.1	35	85	7	98	49	14	8	28	1.71
13909604--13909766	73	2.2	73	82	6	188	41	19	19	20	1.90
13909748--13909786	20	1.9	21	89	5	62	43	20	15	20	1.88
13918558--13918714	73	2.2	73	84	0	197	39	19	19	22	1.92
13928787--13928859	16	4.9	15	75	21	66	20	2	0	76	0.90
13928775--13928871	37	2.6	36	81	12	108	22	3	0	74	0.96
13928777--13928859	29	2.9	29	81	13	77	21	2	0	75	0.91
13928775--13928875	13	8.1	13	74	19	65	22	2	0	74	0.96
13930096--13930154	11	5.4	11	73	20	52	25	0	1	72	0.93
13930094--13930149	16	3.7	15	77	13	53	25	0	1	73	0.93
13930098--13930160	32	2.0	33	85	11	89	26	0	3	69	1.03
13930099--13930174	32	2.4	32	80	12	86	28	0	2	68	1.03
13930110--13930175	29	2.3	26	75	14	60	28	0	3	68	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13933064--13933186	29	4.3	29	76	5	106	31	17	17	33	1.93
13933085--13933190	29	3.7	29	77	3	108	30	17	19	32	1.96
13933716--13933762	23	2.0	23	88	8	69	59	10	12	17	1.60
13940698--13940739	17	2.5	17	100	0	84	23	23	0	52	1.47
13941038--13941219	58	3.2	57	80	6	194	39	10	17	33	1.83
13941074--13941256	29	6.4	29	67	17	100	38	10	13	37	1.80
13942116--13942149	17	2.0	17	88	0	50	23	5	20	50	1.70
13942231--13942270	16	2.4	17	83	8	55	42	0	0	57	0.98
13942645--13942671	14	1.9	14	100	0	54	37	0	3	59	1.15
13942551--13942945	206	1.9	207	88	1	605	39	7	4	47	1.54
13953130--13953155	3	8.7	3	100	0	52	69	0	30	0	0.89
13956949--13957002	28	1.9	28	92	0	90	24	1	14	59	1.46
13975933--13975957	13	1.9	13	100	0	50	48	8	0	44	1.32
13978018--13978104	26	3.3	26	82	3	102	9	22	16	51	1.72
13978296--13978368	36	2.1	35	89	2	110	35	27	10	26	1.90
13978296--13978377	36	2.3	36	85	4	94	35	26	12	25	1.91
13985198--13985222	13	1.9	13	100	0	50	48	8	0	44	1.32
13986595--13986632	19	2.0	19	100	0	76	42	26	0	31	1.56
13988343--13988380	19	2.0	19	100	0	76	42	31	0	26	1.56
13989077--13989114	20	2.0	20	89	5	60	52	5	13	28	1.61
13989576--13989622	21	2.2	21	88	3	67	68	8	21	2	1.27
13989635--13989674	20	1.9	21	85	10	55	52	5	25	17	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13991989--13992016	11	2.5	11	100	0	56	32	0	14	53	1.41
13999663--13999725	20	3.2	20	90	2	101	30	41	3	25	1.71
13999729--13999876	43	3.4	43	87	0	206	21	35	18	24	1.95
14004546--14004587	20	2.2	19	84	16	52	30	2	26	40	1.69
14004582--14004690	37	2.9	37	93	2	184	27	9	37	25	1.86
14004720--14004744	12	2.1	12	100	0	50	32	0	8	60	1.26
14011515--14011556	20	2.2	19	84	16	52	30	2	26	40	1.69
14011551--14011727	37	4.9	37	80	13	226	28	12	35	23	1.91
14011593--14011664	31	2.3	31	83	4	92	31	12	31	23	1.92
14011556--14011694	68	2.0	68	87	5	201	29	12	35	22	1.91
14015016--14015149	36	3.7	36	92	0	205	50	17	14	16	1.78
14017177--14017302	42	3.0	42	83	0	162	22	32	20	24	1.98
14021296--14021350	25	2.2	26	87	9	87	21	27	20	30	1.98
14033646--14033840	95	2.1	92	83	9	234	55	1	8	34	1.39
14036786--14036823	19	2.0	19	89	0	58	39	28	2	28	1.70
14112171--14112224	28	2.0	27	85	3	72	27	20	20	31	1.97
14121441--14121478	19	2.0	19	94	0	67	42	28	0	28	1.56
14134220--14134291	31	2.3	31	90	0	117	23	18	9	48	1.77
14135446--14135491	20	2.3	20	96	0	83	28	4	21	45	1.71
14142891--14142963	21	3.5	20	68	15	58	50	4	1	43	1.29
14143160--14143192	16	2.1	16	88	11	50	30	24	0	45	1.53
14160935--14161052	47	2.5	47	86	6	166	44	9	5	39	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14162815--14162868	17	3.2	17	91	0	90	40	25	5	27	1.78
14167119--14167349	102	2.3	102	89	0	345	25	12	23	38	1.90
14167301--14167332	15	2.1	15	94	0	55	34	12	12	40	1.81
14167902--14167961	30	2.0	30	93	0	102	25	15	30	30	1.95
14168599--14169030	111	3.8	111	85	5	555	17	11	26	44	1.82
14168808--14169069	118	2.2	118	86	0	355	19	10	27	43	1.83
14168599--14169030	228	1.9	221	84	6	573	17	11	26	44	1.82
14168928--14169217	148	2.0	148	84	2	377	17	11	26	43	1.84
14168811--14169342	266	2.0	265	97	1	994	18	11	25	43	1.84
14169078--14169336	118	2.2	117	82	4	315	18	11	26	43	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66