genome.fa.s6.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  40  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14169087--14169367	118	2.4	118	81	4	273	17	12	25	44	1.83
14172392--14172509	62	2.0	56	94	3	157	18	0	25	50	1.51
14175929--14176021	40	2.3	40	96	0	168	32	21	11	34	1.90
14178418--14178474	23	2.5	23	88	0	78	31	28	17	22	1.97
14179210--14179245	15	2.4	15	85	0	54	38	25	30	5	1.78
14180136--14180199	23	2.8	23	78	0	74	34	26	14	25	1.94
14180875--14180932	26	2.3	23	76	18	62	55	6	15	22	1.64
14180882--14180932	26	2.0	26	92	0	84	54	7	15	21	1.66
14182494--14182623	63	2.1	63	86	0	179	24	32	13	29	1.94
14184484--14184528	23	2.0	23	86	8	65	40	28	6	24	1.80
14184489--14184552	22	2.9	22	80	11	69	45	23	6	25	1.76
14184636--14184683	23	2.1	23	84	0	60	39	27	14	18	1.90
14195643--14195768	42	3.0	42	87	4	164	19	35	22	23	1.96
14240481--14240519	20	2.0	20	90	5	62	61	0	0	38	0.96
14257353--14257402	24	2.1	24	81	7	57	40	0	2	58	1.10
14257414--14257465	19	2.9	19	88	11	83	51	0	3	44	1.19
14260232--14260256	13	1.9	13	100	0	50	52	0	0	48	1.00
14265920--14266018	19	5.1	19	67	13	67	21	16	38	24	1.93
14271443--14271486	22	2.0	22	95	0	79	38	22	9	29	1.85
14273756--14273803	21	2.3	20	75	10	51	16	20	8	54	1.68
14273761--14273801	21	1.9	21	85	5	55	19	21	9	48	1.77
14275284--14275343	27	2.2	27	78	0	66	66	11	0	21	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14285472--14285589	36	3.1	36	75	18	114	50	17	13	17	1.77
14285485--14285571	43	2.0	43	88	4	131	50	20	10	18	1.76
14286259--14286297	17	2.3	18	86	8	55	41	0	7	51	1.31
14293778--14293900	43	2.9	43	80	9	144	21	35	17	25	1.95
14296325--14296380	20	2.7	19	78	13	58	73	1	19	5	1.12
14297092--14297162	16	4.3	16	77	19	65	78	2	12	5	1.03
14302926--14302974	18	2.5	21	74	19	59	20	8	14	57	1.63
14304120--14304160	21	2.0	21	85	9	57	75	2	2	19	1.03
14308190--14308227	19	2.0	19	94	0	67	42	28	0	28	1.56
14317288--14317341	21	2.6	21	90	0	90	33	20	25	20	1.97
14320606--14320635	13	2.4	13	94	5	53	20	0	3	76	0.92
14322088--14322137	21	2.4	21	89	0	82	28	16	16	40	1.89
14339706--14339770	33	2.0	33	87	0	94	18	10	21	49	1.78
14340462--14340499	12	3.1	12	88	3	58	39	0	0	60	0.97
14340463--14340509	18	2.7	18	80	9	53	34	0	2	63	1.06
14349693--14349748	25	2.2	25	78	15	62	55	0	0	44	0.99
14360332--14360374	21	2.0	21	81	0	50	30	9	34	25	1.87
14360764--14360826	22	2.9	22	95	0	108	44	22	3	30	1.68
14363993--14364032	20	2.0	21	90	5	64	25	2	2	70	1.13
14366885--14367069	41	4.6	40	74	12	125	24	15	35	24	1.94
14373446--14373472	14	1.9	14	100	0	54	14	37	0	48	1.45
14374404--14374445	21	2.0	20	86	4	57	26	50	9	14	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14374833--14374880	18	2.6	18	87	9	62	60	0	2	37	1.09
14383501--14383548	19	2.6	19	90	3	71	56	0	4	39	1.19
14384247--14384293	20	2.3	20	96	0	85	12	4	17	65	1.40
14385585--14385632	20	2.4	20	85	0	60	22	2	10	64	1.35
14386222--14386304	40	2.1	40	100	0	166	34	14	9	40	1.79
14401991--14402015	13	1.9	13	100	0	50	52	0	0	48	1.00
14450689--14450734	15	3.1	14	84	9	65	54	15	4	26	1.59
14454398--14454434	19	1.9	19	100	0	74	43	29	0	27	1.55
14460845--14460887	21	2.0	22	86	13	63	62	6	18	11	1.50
14465083--14465107	13	1.9	13	100	0	50	44	0	8	48	1.32
14480163--14480187	13	1.9	13	100	0	50	44	0	8	48	1.32
14490523--14490547	13	1.9	13	100	0	50	52	0	0	48	1.00
14502010--14502139	23	5.7	22	74	9	109	31	13	18	36	1.89
14502010--14502139	44	2.8	46	79	5	138	31	13	18	36	1.89
14504953--14505097	43	3.4	43	85	11	183	26	18	34	20	1.96
14505096--14505158	20	3.2	20	88	2	101	25	1	41	31	1.65
14507748--14507772	8	3.1	8	100	0	50	28	0	12	60	1.32
14508061--14508285	76	3.0	75	87	1	324	24	16	26	32	1.96
14521582--14521756	42	4.1	42	84	7	230	25	17	32	25	1.96
14523385--14523411	14	1.9	14	100	0	54	44	22	18	14	1.86
14525861--14525902	21	2.0	21	90	0	66	21	26	16	35	1.94
14532800--14532871	36	2.0	37	86	2	101	33	11	23	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14534259--14534306	25	1.9	25	82	0	60	66	6	2	25	1.26
14546474--14546540	33	2.0	33	97	0	125	38	17	10	32	1.84
14555148--14555172	6	4.2	6	100	0	50	84	0	0	16	0.63
14569699--14569782	37	2.3	37	83	4	98	34	10	21	33	1.88
14579509--14579533	13	1.9	13	100	0	50	48	8	0	44	1.32
14581982--14582031	20	2.4	21	86	3	66	24	0	12	64	1.27
14582991--14583112	61	2.0	61	98	1	228	24	24	4	45	1.73
14585196--14585222	13	2.1	13	100	0	54	33	0	0	66	0.92
14585641--14585680	19	2.2	19	86	4	55	50	0	5	45	1.23
14585741--14585855	56	2.1	56	98	0	221	45	4	26	23	1.72
14598860--14598909	21	2.5	20	83	3	64	28	2	8	62	1.35
14601389--14601546	54	2.9	54	89	1	237	23	43	13	19	1.86
14601518--14601658	38	3.7	38	91	3	203	21	37	17	22	1.94
14601591--14601654	19	3.4	19	65	8	58	18	40	18	21	1.91
14601770--14601802	2	16.5	2	100	0	66	48	0	0	51	1.00
14604304--14604361	24	2.4	24	85	0	80	41	20	15	22	1.90
14604254--14604399	69	2.1	69	88	2	213	35	20	17	26	1.95
14604328--14604444	45	2.6	45	83	2	137	35	21	17	24	1.95
14604377--14604575	71	2.9	67	82	5	236	35	19	19	26	1.95
14604255--14604479	114	2.0	114	91	1	362	34	20	19	25	1.96
14604428--14604475	24	2.0	24	87	0	69	41	20	16	20	1.90
14604517--14604613	45	2.2	45	90	0	149	30	18	21	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14604629--14604702	26	2.9	25	80	7	87	37	17	17	27	1.92
14604678--14604744	32	2.1	32	94	0	116	35	11	16	35	1.86
14604597--14604749	29	5.4	28	75	20	115	37	15	16	30	1.91
14604700--14604762	29	2.2	29	88	0	90	44	12	11	31	1.78
14605550--14605597	21	2.2	21	77	3	51	60	6	16	16	1.55
14613646--14613670	13	1.9	13	100	0	50	48	0	0	52	1.00
14617345--14617490	74	2.0	72	97	1	265	40	4	10	43	1.59
14618668--14618784	35	3.3	36	87	2	123	29	29	10	29	1.90
14628188--14628276	35	2.6	35	89	1	135	29	33	6	30	1.83
14629661--14629703	21	2.0	21	86	8	61	65	6	2	25	1.30
14631965--14632069	38	2.7	39	82	7	124	23	18	36	21	1.95
14647292--14647598	63	4.9	63	89	2	472	29	13	33	24	1.93
14647292--14647598	127	2.4	126	91	1	481	29	13	33	24	1.93
14650589--14650622	18	1.9	18	88	5	52	58	11	0	29	1.33
14650582--14650638	19	3.2	17	73	20	53	59	10	0	29	1.31
14654605--14654734	67	1.9	67	82	3	163	26	11	25	36	1.90
14656206--14656473	45	5.9	44	76	13	251	36	19	13	30	1.90
14656198--14656472	90	3.0	90	80	7	301	36	19	13	30	1.90
14656964--14657098	45	3.0	45	78	6	146	37	25	12	24	1.91
14656973--14657097	46	2.7	46	78	6	137	36	27	13	23	1.92
14663829--14663873	20	2.2	21	84	11	58	33	0	24	42	1.55
14664247--14664361	40	2.9	40	82	2	133	28	15	27	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14668389--14668599	80	2.6	80	78	10	243	23	22	19	34	1.96
14671041--14671204	43	3.8	43	88	2	215	22	17	35	23	1.95
14672037--14672067	14	2.2	14	94	0	53	25	19	6	48	1.72
14682135--14682159	13	1.9	13	100	0	50	48	8	0	44	1.32
14683012--14683040	10	2.9	10	100	0	58	10	17	10	62	1.54
14686336--14687058	241	3.0	241	99	0	1428	34	16	20	29	1.94
14696758--14696905	79	1.9	79	79	10	169	22	20	22	34	1.97
14698948--14698976	2	14.5	2	100	0	58	48	0	0	51	1.00
14699253--14699285	15	2.2	15	94	0	57	27	45	12	15	1.81
14699882--14699906	12	2.1	12	100	0	50	36	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66