genome.fa.s6.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  49  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17786999--17787030	2	16.5	2	93	6	57	53	0	0	46	1.00
17798577--17798669	31	3.0	30	92	6	150	60	3	1	35	1.20
17799551--17799613	31	2.0	31	84	6	83	28	12	12	46	1.79
17799570--17799634	31	2.1	31	82	2	76	30	10	7	50	1.65
17801323--17801381	2	30.0	2	86	3	84	50	3	0	45	1.18
17801435--17801478	2	22.0	2	100	0	88	50	0	0	50	1.00
17802639--17802729	41	2.2	41	82	9	114	36	17	15	30	1.91
17803128--17803175	25	1.9	25	82	0	60	56	12	6	25	1.59
17803665--17803731	30	2.2	30	89	0	98	38	5	11	43	1.66
17805630--17805672	17	2.7	15	83	13	59	55	9	0	34	1.32
17806967--17807010	21	2.0	22	83	12	56	54	11	0	34	1.36
17807664--17807708	12	3.6	12	79	8	54	0	15	0	84	0.62
17811223--17811265	17	2.7	15	86	13	68	58	9	0	32	1.30
17812353--17812397	22	2.0	23	87	8	67	15	44	6	33	1.73
17818266--17818366	2	49.5	2	75	11	80	41	0	7	48	1.39
17818267--17818401	68	2.0	67	97	2	245	38	1	11	47	1.50
17823162--17823198	6	6.2	6	100	0	74	32	0	51	16	1.45
17828379--17828442	33	1.9	33	83	0	83	48	3	9	39	1.51
17831506--17831683	87	2.0	87	93	0	302	29	10	19	41	1.84
17836322--17836356	6	5.8	6	100	0	70	17	0	17	65	1.27
17843940--17843969	9	3.3	9	95	0	51	50	0	6	43	1.28
17862445--17862488	15	2.9	15	83	16	56	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17862445--17862486	16	2.6	16	85	14	52	71	0	0	28	0.86
17862576--17862658	41	2.0	41	95	4	150	33	22	14	28	1.94
17864901--17864935	16	2.2	16	89	0	52	74	2	0	22	0.95
17865016--17865065	21	2.4	22	80	10	59	64	2	4	30	1.23
17865939--17865990	20	2.5	21	84	9	63	26	0	7	65	1.20
17866497--17866533	19	1.9	19	94	0	65	37	21	18	21	1.94
17868100--17868146	24	2.0	24	100	0	94	21	19	25	34	1.96
17889556--17889581	2	13.0	2	100	0	52	50	0	50	0	1.00
17891169--17891285	59	2.0	59	94	0	207	35	15	7	41	1.76
17892825--17892870	24	2.0	23	91	4	74	13	17	10	58	1.62
17895586--17895630	14	3.2	15	78	15	51	75	0	0	24	0.80
17895587--17895630	17	2.7	17	86	6	65	77	0	0	22	0.77
17895893--17895978	19	4.5	19	73	22	65	75	1	1	22	0.94
17895888--17895975	31	2.9	32	80	11	96	77	1	1	20	0.90
17895889--17895978	8	11.0	8	71	17	69	76	1	1	21	0.91
17895888--17895978	33	2.8	33	74	16	73	76	1	1	20	0.91
17902091--17902128	14	2.7	14	80	11	51	55	2	36	5	1.37
17909316--17909385	3	23.0	3	79	13	72	31	1	1	65	1.10
17909621--17909650	14	2.2	13	94	5	51	0	16	0	83	0.65
17909858--17909898	21	2.0	21	90	9	66	48	0	2	48	1.14
17910467--17910491	10	2.5	10	100	0	50	8	8	0	84	0.79
17911012--17911390	59	6.4	59	83	1	452	34	18	13	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17911012--17911392	119	3.2	118	85	1	474	34	18	13	33	1.90
17911012--17911383	178	2.1	179	85	1	487	34	18	13	33	1.90
17912295--17912324	12	2.5	12	94	0	51	20	0	0	80	0.72
17912290--17912319	15	1.9	15	93	6	51	20	0	0	80	0.72
17920704--17920767	3	21.0	3	77	15	60	31	1	1	65	1.11
17921516--17921549	14	2.4	14	86	13	52	5	11	8	73	1.24
17925806--17926250	180	2.5	178	81	5	477	33	13	14	38	1.85
17928896--17928952	2	30.0	2	89	10	93	49	0	0	50	1.00
17933921--17933970	26	1.9	26	84	8	66	48	10	10	32	1.70
17936267--17936414	76	2.0	74	82	2	179	43	4	11	40	1.62
17953151--17953184	2	17.0	2	93	0	59	50	2	0	47	1.16
17955965--17956273	109	3.0	100	84	8	402	42	12	22	22	1.87
17956689--17956721	17	1.9	17	93	0	57	9	6	3	81	0.95
17957532--17957571	18	2.2	18	86	0	53	52	15	2	30	1.55
17964767--17964813	26	2.0	24	84	16	62	46	8	17	27	1.76
17972657--17972683	13	2.1	13	100	0	54	70	7	0	22	1.12
17972673--17972804	69	1.9	69	93	3	223	47	3	0	46	1.25
17978667--17978733	15	4.7	15	74	20	63	47	1	0	50	1.10
17978667--17978741	15	5.3	15	72	15	52	50	1	0	48	1.09
17984992--17985027	3	12.3	3	94	5	65	30	0	0	69	0.89
17988686--17988719	16	2.2	16	89	5	52	58	2	0	38	1.13
17990854--17990932	40	2.0	40	82	9	99	46	18	12	21	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17991986--17992022	19	1.9	19	88	0	56	86	2	0	10	0.67
17992324--17992364	2	20.5	2	100	0	82	48	0	0	51	1.00
17992943--17992967	2	12.5	2	100	0	50	48	0	0	52	1.00
17997089--17997117	2	14.5	2	100	0	58	51	0	0	48	1.00
17997217--17997245	2	14.5	2	100	0	58	51	0	0	48	1.00
17998499--17998547	24	2.1	23	88	3	71	8	53	4	34	1.50
17998579--17998641	24	2.6	24	82	0	72	7	47	3	41	1.48
17998619--17998683	34	2.0	32	84	6	85	3	44	9	43	1.51
18000362--18000500	71	2.0	71	82	2	172	37	12	2	46	1.57
18004740--18004780	19	2.1	19	90	9	64	41	4	4	48	1.46
18004817--18004857	20	2.0	20	90	0	64	41	4	9	43	1.59
18005179--18005209	16	1.9	16	93	0	53	64	3	0	32	1.09
18008142--18008199	29	2.0	29	83	6	73	48	0	3	48	1.18
18031048--18031103	27	2.1	27	86	6	78	46	0	3	50	1.19
18035662--18035711	23	2.1	25	82	14	61	32	8	0	60	1.26
18035887--18035937	3	17.7	3	80	11	54	27	5	0	66	1.14
18035970--18035998	2	15.0	2	92	7	51	48	0	0	51	1.00
18036895--18036923	11	2.6	11	100	0	58	17	0	0	82	0.66
18049754--18049803	23	2.1	25	82	14	61	32	8	0	60	1.26
18049978--18050034	9	6.3	9	78	6	53	24	5	0	70	1.08
18049982--18050032	3	16.7	3	76	11	50	27	5	0	66	1.14
18049975--18050043	28	2.6	26	76	10	68	23	5	1	69	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18049975--18050032	28	2.1	28	86	0	80	25	5	0	68	1.10
18074893--18074956	2	32.0	2	87	9	87	46	0	48	3	1.18
18083362--18083912	291	1.9	291	93	0	951	31	10	16	41	1.83
18092115--18092163	2	24.5	2	95	0	89	48	0	2	48	1.12
18103763--18103836	35	2.1	34	87	2	103	60	12	0	27	1.32
18106849--18107045	98	2.0	99	88	1	297	27	9	9	54	1.62
18108863--18108896	2	17.0	2	100	0	68	50	0	0	50	1.00
18113899--18113949	8	6.6	8	77	8	52	45	0	0	54	0.99
18113875--18113956	30	2.9	28	80	8	94	40	2	0	57	1.12
18114259--18114285	2	13.5	2	100	0	54	51	0	0	48	1.00
18116364--18116402	2	19.5	2	100	0	78	48	0	0	51	1.00
18116436--18116474	2	19.5	2	100	0	78	48	0	0	51	1.00
18120427--18120537	24	4.8	24	77	6	120	31	17	28	22	1.96
18120407--18120535	69	1.9	69	90	0	204	31	15	29	24	1.95
18120407--18120557	69	2.2	69	85	2	196	31	15	29	23	1.95
18122176--18122227	26	2.0	26	96	0	95	21	13	7	57	1.61
18122169--18122234	26	2.8	23	79	18	73	22	13	6	57	1.58
18122456--18122650	95	2.1	92	86	4	266	27	12	25	34	1.92
18122500--18122674	95	1.8	95	81	4	219	29	15	22	32	1.95
18126055--18126222	78	2.2	78	83	0	210	18	22	16	42	1.89
18129668--18129715	22	2.2	22	85	7	62	47	25	12	14	1.79
18129550--18129879	118	2.9	118	81	4	334	46	23	10	19	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18131270--18131425	40	3.7	40	74	12	141	36	25	13	24	1.92
18131301--18131474	48	3.8	48	72	11	166	37	24	12	25	1.90
18131267--18131462	88	2.2	88	88	0	284	38	23	12	25	1.90
18132294--18132835	23	23.9	23	70	12	275	33	10	30	24	1.90
18132620--18132764	67	2.2	66	81	6	166	33	10	31	24	1.89
18135042--18135141	26	3.9	26	75	5	105	33	16	17	34	1.91
18135042--18135177	26	5.5	24	74	7	94	33	16	15	34	1.90
18148517--18148800	135	2.1	135	84	3	376	31	9	11	47	1.73
18151392--18151425	16	2.1	16	89	10	52	82	0	17	0	0.67
18155238--18155269	15	2.1	15	94	0	55	40	15	12	31	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66