genome.fa.s6.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  53  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19246804--19247130	4	81.8	4	74	5	196	48	9	3	38	1.55
19246995--19247130	6	23.2	6	84	4	125	48	8	2	41	1.45
19248021--19248072	24	2.2	25	83	13	65	19	9	3	67	1.35
19248056--19248095	16	2.6	15	84	7	53	2	17	0	80	0.83
19252050--19252080	2	15.5	2	100	0	62	48	0	51	0	1.00
19255308--19255350	2	21.5	2	100	0	86	48	0	0	51	1.00
19259683--19259732	24	2.1	24	84	0	64	42	6	40	12	1.67
19270510--19270553	14	3.1	14	90	9	72	50	0	6	43	1.29
19272340--19272638	151	2.0	150	95	0	526	23	31	19	25	1.98
19276912--19276967	19	3.1	18	80	14	62	0	25	0	75	0.81
19276919--19276971	17	3.1	17	82	15	65	0	24	0	75	0.80
19276921--19276971	14	3.8	13	75	12	50	0	25	0	74	0.82
19276976--19277196	123	1.9	120	90	6	360	1	36	5	56	1.32
19277719--19277812	47	2.0	47	100	0	188	27	19	6	46	1.74
19283719--19283834	60	1.9	60	83	10	148	41	7	4	46	1.52
19287945--19287980	18	2.0	18	94	0	63	22	0	8	69	1.15
19289180--19289245	21	3.1	21	79	16	57	27	3	0	69	1.03
19289177--19289226	15	3.7	13	85	15	66	26	0	0	74	0.83
19299441--19299481	21	2.0	21	85	0	55	31	9	12	46	1.74
19302699--19302723	2	12.5	2	100	0	50	52	0	0	48	1.00
19303279--19303306	2	14.0	2	100	0	56	50	0	0	50	1.00
19303604--19303630	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19304243--19304316	35	2.1	35	85	7	98	58	12	0	29	1.35
19304461--19304498	15	2.5	15	84	16	51	44	2	0	52	1.14
19304461--19304497	16	2.4	16	86	13	51	45	2	0	51	1.15
19309523--19309576	25	2.3	22	78	15	54	46	7	0	44	1.31
19309502--19309743	122	2.0	124	83	4	301	41	14	2	41	1.58
19309544--19309776	122	1.9	121	82	4	286	40	14	2	42	1.59
19315103--19315357	84	3.0	85	83	4	338	29	15	9	45	1.77
19330877--19330931	2	27.5	2	100	0	110	49	0	0	50	1.00
19331009--19331050	2	21.5	2	95	4	77	50	0	0	50	1.00
19370671--19370707	16	2.3	16	90	0	56	62	21	16	0	1.33
19371610--19371671	9	7.3	9	75	21	55	70	0	0	29	0.87
19371618--19371671	25	2.3	24	77	22	62	70	0	0	29	0.88
19371853--19371939	33	2.7	32	87	7	122	67	1	1	29	1.05
19372159--19372221	15	4.2	15	72	0	54	38	14	3	44	1.61
19372619--19372845	122	1.9	121	85	2	321	40	13	10	35	1.79
19384882--19384931	24	2.1	24	96	0	91	42	28	8	22	1.81
19385032--19385065	3	11.3	3	100	0	68	67	0	0	32	0.91
19385917--19385972	29	1.9	29	82	7	69	69	7	10	12	1.36
19389391--19389432	19	2.3	19	87	4	59	35	0	0	64	0.94
19389414--19389490	26	2.9	27	75	13	70	31	2	2	63	1.21
19389420--19389486	26	2.5	27	83	9	75	28	2	2	65	1.22
19389413--19389500	27	3.1	29	77	12	94	35	3	2	59	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19390280--19390312	16	2.0	17	88	5	50	24	12	6	57	1.57
19398957--19399016	30	2.0	30	100	0	120	16	13	16	53	1.73
19412923--19412983	28	2.2	28	84	0	77	26	11	14	47	1.78
19419393--19419642	125	2.0	126	92	2	423	37	18	10	34	1.85
19423923--19423953	2	15.5	2	93	0	53	54	0	45	0	0.99
19425079--19425106	12	2.3	12	100	0	56	67	0	7	25	1.15
19427268--19427312	7	6.4	7	86	0	54	77	0	17	4	0.92
19428363--19428641	144	1.9	144	82	1	344	34	12	16	36	1.87
19431785--19431816	15	2.1	15	94	0	55	68	0	0	31	0.90
19431773--19431821	20	2.4	21	75	3	55	63	2	0	34	1.06
19431800--19431866	31	2.1	33	86	10	95	65	0	5	28	1.16
19432189--19432228	15	2.7	15	96	0	71	35	25	5	35	1.78
19434769--19434801	17	1.9	17	88	11	50	45	12	3	39	1.57
19434953--19435083	57	2.3	57	84	3	167	40	10	9	38	1.73
19434953--19435083	28	4.6	28	80	7	158	40	10	9	38	1.73
19435677--19435714	19	2.0	19	94	0	67	28	0	28	42	1.56
19439454--19439493	19	2.0	20	85	4	55	45	22	2	30	1.66
19439900--19439924	13	1.9	13	100	0	50	44	0	8	48	1.32
19446179--19446203	13	1.9	13	100	0	50	48	12	0	40	1.40
19447529--19447565	15	2.5	15	86	4	58	40	5	2	51	1.39
19451367--19451404	17	2.2	18	85	4	51	52	0	0	47	1.00
19456123--19456255	67	2.0	67	91	2	214	51	10	11	27	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19461578--19461846	132	2.0	136	88	5	406	43	3	7	45	1.48
19461578--19461784	66	3.2	65	66	18	167	44	3	8	43	1.50
19464976--19465059	43	2.0	43	90	0	132	29	14	21	34	1.93
19474863--19474910	15	3.2	15	78	0	60	37	2	22	37	1.66
19480156--19480187	2	16.0	2	100	0	64	50	0	0	50	1.00
19482724--19482760	20	2.0	19	85	15	51	27	16	2	54	1.56
19499274--19499309	3	12.0	3	93	0	63	66	0	30	2	1.06
19503330--19503411	43	1.9	43	89	0	128	14	18	23	43	1.86
19506726--19506767	15	2.8	15	81	0	57	42	4	2	50	1.36
19510783--19510917	71	1.9	71	81	3	164	42	6	18	31	1.76
19511162--19511210	24	2.2	21	82	10	53	48	0	0	51	1.00
19512459--19512533	22	3.4	22	83	3	89	32	9	12	46	1.73
19512558--19512636	23	3.5	23	91	1	115	22	12	31	32	1.92
19512647--19512700	22	2.5	22	74	14	58	46	24	9	20	1.79
19513017--19513057	21	2.0	20	85	4	55	63	0	0	36	0.95
19527764--19527866	45	2.3	45	81	0	116	47	7	0	44	1.32
19527832--19527886	19	2.9	19	83	8	67	52	3	0	43	1.18
19528243--19528272	16	1.9	16	93	6	53	40	0	3	56	1.16
19544792--19544828	18	2.1	18	100	0	74	21	32	5	40	1.76
19550697--19550752	27	2.1	26	83	6	67	57	0	3	39	1.16
19552291--19552344	23	2.3	23	90	6	83	46	0	1	51	1.11
19552343--19552386	20	2.2	20	83	0	52	20	4	0	72	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19552695--19552783	33	2.7	33	84	5	101	35	6	43	13	1.70
19553002--19553034	17	1.9	17	93	0	57	24	21	12	42	1.86
19558601--19558694	33	2.8	33	80	7	109	29	8	1	60	1.33
19562292--19562361	30	2.5	27	75	13	70	55	0	0	44	0.99
19567811--19567863	2	26.5	2	96	0	97	49	1	0	49	1.12
19570168--19570239	35	2.1	35	97	0	135	29	36	11	23	1.89
19571819--19572135	165	1.9	167	88	1	485	37	14	17	31	1.89
19572879--19572940	31	2.0	31	87	6	90	25	16	14	43	1.86
19574872--19574898	8	3.4	8	100	0	54	0	22	0	77	0.76
19575232--19575308	36	2.1	36	87	0	109	50	0	42	6	1.28
19575256--19575362	15	7.3	15	74	6	76	47	0	47	4	1.23
19575245--19575387	42	3.4	42	86	10	195	50	0	45	4	1.21
19575245--19575387	6	23.8	6	76	5	65	50	0	45	4	1.21
19575280--19575386	3	35.7	3	80	3	63	52	0	44	2	1.15
19586330--19586365	2	17.5	2	94	5	63	47	0	2	50	1.15
19586328--19586365	19	2.0	19	100	0	76	47	0	5	47	1.24
19586332--19586364	17	1.9	17	100	0	66	48	0	3	48	1.17
19587649--19587679	12	2.5	13	89	10	55	54	0	0	45	0.99
19591421--19591575	54	2.9	54	90	0	229	25	12	36	25	1.92
19592355--19592379	12	2.1	12	100	0	50	76	0	0	24	0.80
19592354--19592400	17	2.7	17	86	3	67	72	0	0	27	0.85
19595654--19595743	41	2.2	41	95	0	162	26	16	20	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19595654--19595761	41	2.6	41	88	2	119	28	17	18	35	1.94
19595764--19595793	11	2.8	11	95	5	53	43	20	10	26	1.83
19595957--19596012	29	1.9	29	82	7	69	28	0	3	67	1.07
19601779--19601812	17	2.1	17	88	5	52	73	0	17	8	1.08
19614482--19614545	16	3.7	17	76	14	60	73	1	0	25	0.92
19618866--19618914	17	2.9	17	82	14	66	75	0	0	24	0.80
19618864--19618916	22	2.5	20	82	8	70	77	0	0	22	0.77
19620798--19620835	10	3.8	10	82	10	51	86	2	0	10	0.66
19621562--19621592	2	15.5	2	100	0	62	51	48	0	0	1.00
19622883--19623047	27	6.0	27	78	2	159	41	14	7	36	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66