genome.fa.s6.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  30  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10357030--10357114	27	3.1	27	80	8	109	32	0	2	64	1.06
10357508--10357546	14	2.7	14	85	14	53	30	5	5	58	1.41
10359030--10359054	13	1.9	13	100	0	50	48	8	0	44	1.32
10364478--10364518	19	2.2	19	100	0	82	31	7	19	41	1.79
10365617--10365666	2	25.0	2	100	0	100	50	0	0	50	1.00
10376711--10376749	14	2.7	15	84	8	53	53	0	2	43	1.14
10376705--10376757	15	3.6	14	78	16	54	49	0	3	47	1.19
10377457--10377488	14	2.3	14	94	0	55	25	0	28	46	1.53
10377964--10378031	35	1.9	35	82	5	84	52	4	1	41	1.30
10384157--10384222	29	2.3	29	100	0	132	36	18	16	28	1.93
10384741--10384820	26	3.2	26	71	20	89	23	12	26	37	1.90
10384760--10384842	22	3.6	22	73	12	85	21	14	25	38	1.91
10384736--10384849	48	2.4	48	96	0	210	25	11	23	39	1.88
10384832--10384864	15	2.2	15	94	0	57	33	9	18	39	1.82
10386289--10386584	119	2.5	119	86	2	382	17	10	26	45	1.80
10392699--10392999	78	3.9	78	90	1	417	40	12	26	20	1.88
10395687--10395886	61	3.2	62	84	7	237	34	20	10	36	1.86
10398178--10398223	23	2.0	23	82	0	56	39	26	6	28	1.81
10398184--10398307	46	2.7	46	88	2	160	33	27	10	29	1.90
10398214--10398284	23	3.1	23	64	8	54	30	29	9	29	1.89
10398225--10398294	23	3.0	23	65	8	61	34	24	11	30	1.90
10398237--10398309	23	3.2	23	71	7	76	34	27	15	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10398296--10398353	23	2.5	23	85	0	71	36	25	13	24	1.92
10398798--10398847	26	1.9	26	95	0	91	58	4	14	24	1.53
10400680--10400739	24	2.5	25	79	15	65	43	16	30	10	1.81
10410223--10410265	21	2.0	21	81	0	50	30	9	34	25	1.87
10414708--10414745	2	19.0	2	100	0	76	50	0	0	50	1.00
10415290--10415352	21	3.0	20	90	6	83	17	31	25	25	1.97
10415305--10415352	21	2.3	21	100	0	96	18	33	22	25	1.97
10416893--10416938	20	2.3	20	96	0	83	28	4	19	47	1.68
10416983--10417040	28	2.1	27	81	12	73	31	18	22	27	1.97
10437362--10437451	33	2.8	33	78	11	105	26	14	22	36	1.92
10437592--10437651	18	3.3	18	69	17	52	23	10	8	58	1.57
10437583--10437652	36	2.0	34	91	5	113	22	10	11	55	1.65
10441142--10441182	20	2.0	20	95	0	73	24	0	41	34	1.55
10441639--10441783	34	4.3	33	76	6	146	29	10	25	34	1.89
10441638--10441760	33	3.6	33	83	5	149	30	11	23	34	1.90
10441638--10441800	69	2.4	67	80	6	166	29	12	24	33	1.92
10441990--10442027	16	2.4	17	82	13	53	78	0	18	2	0.86
10442022--10442106	25	3.2	26	86	8	109	47	17	22	12	1.82
10450936--10450981	20	2.3	20	96	0	83	28	4	21	45	1.71
10458971--10459016	20	2.3	20	88	7	67	32	4	17	45	1.68
10459061--10459113	28	1.9	27	88	3	79	30	18	22	28	1.98
10459061--10459119	28	2.1	28	84	6	75	30	20	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10461840--10461880	20	2.0	20	95	0	73	24	0	41	34	1.55
10462066--10462118	15	3.5	15	80	10	56	69	0	28	1	0.99
10462367--10462421	24	2.3	24	96	3	103	29	23	29	18	1.98
10462423--10462495	23	3.2	23	90	0	119	35	6	23	34	1.81
10462473--10462555	34	2.5	32	86	9	112	30	14	24	31	1.94
10462666--10462743	22	3.7	22	79	5	90	35	14	41	8	1.77
10462803--10462864	24	2.5	25	82	7	74	50	11	19	19	1.77
10468134--10468171	19	2.0	19	100	0	76	42	31	0	26	1.56
10472473--10472526	26	2.2	26	83	6	67	29	1	3	64	1.21
10489363--10489409	22	2.0	24	84	15	64	19	25	6	48	1.72
10491084--10491126	20	2.1	21	86	4	61	44	9	32	13	1.76
10492801--10492848	22	2.1	23	84	3	62	47	6	27	18	1.72
10495431--10495497	31	2.1	32	94	2	118	40	14	10	34	1.81
10496316--10496362	19	2.5	19	82	6	51	59	0	2	38	1.09
10501605--10501647	21	2.0	20	86	8	59	25	20	23	30	1.99
10509393--10509435	2	21.5	2	100	0	86	0	48	0	51	1.00
10512202--10512226	13	1.9	13	100	0	50	44	0	8	48	1.32
10514189--10514230	16	2.5	17	84	3	50	16	2	9	71	1.23
10514278--10514333	27	2.1	27	100	0	112	58	0	25	16	1.37
10514867--10514898	16	1.9	17	93	6	57	40	3	25	31	1.71
10516748--10516918	45	3.8	45	73	6	148	33	22	18	25	1.97
10516709--10516903	90	2.2	90	83	1	230	32	22	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10525270--10525298	2	14.5	2	100	0	58	48	0	0	51	1.00
10526909--10526943	16	2.2	16	89	0	52	48	8	2	40	1.49
10527780--10527817	19	2.0	19	94	0	67	28	0	28	42	1.56
10531063--10531100	19	2.0	19	94	0	67	42	28	0	28	1.56
10534969--10535007	20	2.0	20	89	0	60	43	25	2	28	1.68
10543115--10543188	36	2.1	36	94	0	130	33	4	36	25	1.75
10543926--10543997	36	2.0	36	91	0	117	15	9	34	40	1.80
10544501--10544540	19	2.1	19	90	9	64	20	10	32	37	1.85
10544687--10544841	77	2.0	77	93	0	265	40	7	7	43	1.62
10548156--10548633	238	2.0	238	95	0	866	26	18	8	46	1.78
10550817--10550845	5	5.8	5	100	0	58	37	0	0	62	0.96
10552820--10552859	15	2.6	16	84	11	57	7	10	7	75	1.20
10561637--10561688	26	2.0	26	92	0	86	25	17	13	44	1.85
10562015--10562694	252	2.7	250	85	3	885	48	6	9	35	1.61
10562240--10563108	445	1.9	450	84	2	1167	48	6	10	34	1.63
10563807--10563867	29	2.1	30	81	9	72	52	1	3	42	1.27
10562698--10565543	250	11.4	248	81	6	2767	49	5	10	34	1.62
10562703--10565543	752	3.8	748	82	4	3193	49	5	10	34	1.62
10571945--10572025	43	1.9	42	87	2	117	22	20	20	35	1.96
10572428--10572455	2	14.0	2	100	0	56	50	0	0	50	1.00
10586550--10586601	19	2.6	19	81	6	59	46	5	1	46	1.38
10586620--10586652	15	2.1	17	88	11	52	54	6	0	39	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10589715--10589756	22	1.9	22	85	9	59	52	2	2	42	1.27
10590361--10590390	15	1.9	16	93	6	53	56	0	0	43	0.99
10590558--10590637	41	2.0	40	81	9	94	11	40	10	38	1.75
10593926--10594126	40	4.9	40	81	3	233	20	0	18	59	1.43
10593930--10594126	81	2.4	81	83	4	245	20	1	18	59	1.44
10594822--10594979	29	5.4	28	77	11	149	38	9	12	39	1.76
10594863--10594978	59	2.0	58	88	5	171	42	11	11	35	1.76
10596955--10597132	41	4.5	38	73	12	119	24	36	14	24	1.93
10597040--10597139	38	2.5	39	82	7	114	25	41	13	21	1.88
10597846--10597889	22	2.0	22	86	8	63	31	20	6	40	1.79
10598690--10598749	30	2.1	29	81	6	68	31	8	21	38	1.83
10603151--10603253	52	2.0	52	100	0	206	21	12	33	33	1.91
10603218--10603305	35	2.4	37	74	21	94	21	13	36	28	1.92
10603230--10603344	36	3.2	35	81	8	108	23	13	33	29	1.92
10607244--10607277	17	2.1	17	94	5	61	29	0	11	58	1.33
10614430--10614458	2	14.5	2	100	0	58	51	0	0	48	1.00
10616259--10616283	13	1.9	13	100	0	50	48	8	0	44	1.32
10621826--10621865	5	8.0	5	91	0	62	37	22	0	40	1.54
10621911--10621952	15	2.8	15	88	0	66	57	14	2	26	1.50
10623343--10623367	13	1.9	13	100	0	50	48	8	0	44	1.32
10628194--10628634	169	2.6	169	84	3	550	37	14	14	33	1.86
10631567--10631628	26	2.4	26	91	0	106	32	40	3	24	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10631648--10631789	42	3.4	42	89	0	221	23	33	22	20	1.97
10643267--10643353	43	2.0	43	93	4	149	26	18	33	21	1.96
10644523--10644613	41	2.2	41	84	0	110	50	10	9	28	1.69
10644670--10644770	52	1.9	52	95	0	184	30	4	26	37	1.78
10646965--10647093	2	61.5	2	78	15	104	46	6	3	42	1.47
10651597--10651647	9	5.7	9	80	0	57	21	47	0	31	1.51
10657083--10657126	22	2.0	22	82	13	54	61	6	18	13	1.54
10661583--10661743	55	2.9	55	86	3	225	28	37	13	20	1.91
10668167--10668197	16	2.0	15	93	6	53	77	0	9	12	0.99
10668368--10668490	61	2.0	61	98	0	237	36	3	21	39	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66