genome.fa.s6.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  42  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15161531--15161583	28	1.9	28	88	3	81	30	16	20	32	1.95
15162288--15162390	38	2.6	39	81	6	120	20	15	39	24	1.91
15163927--15163988	28	2.2	27	83	11	72	37	22	16	24	1.94
15163942--15164026	28	2.9	30	82	8	95	37	22	14	25	1.92
15166501--15166710	73	2.9	73	87	4	255	26	17	17	39	1.91
15171385--15171424	2	20.0	2	100	0	80	50	0	0	50	1.00
15171448--15171612	42	3.9	42	81	6	127	22	33	20	23	1.97
15175738--15175851	20	5.7	20	100	0	228	51	4	0	43	1.21
15177107--15177150	22	2.0	22	86	0	61	36	13	38	11	1.81
15177195--15177229	5	6.8	5	93	6	61	80	0	17	2	0.84
15177195--15177234	10	3.8	11	93	3	57	77	0	15	7	0.98
15183933--15183976	22	2.0	22	86	0	61	36	13	38	11	1.81
15184021--15184055	5	6.8	5	93	6	61	80	0	17	2	0.84
15184021--15184060	10	3.8	11	93	3	57	77	0	15	7	0.98
15189847--15189979	34	3.9	34	84	2	151	36	30	12	21	1.90
15189847--15189980	68	2.0	68	83	5	173	35	29	11	22	1.90
15194192--15194273	41	2.0	41	90	4	130	28	13	26	31	1.94
15195912--15196014	38	2.6	40	87	3	147	21	40	17	20	1.91
15213223--15213260	20	1.9	20	94	0	67	23	44	7	23	1.79
15214407--15214476	37	1.9	36	87	0	95	32	8	30	28	1.87
15215042--15215090	2	25.0	2	91	4	82	48	2	0	48	1.12
15215121--15215155	2	17.5	2	100	0	70	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15234118--15234281	77	2.1	77	89	2	249	40	6	12	39	1.70
15234147--15234330	77	2.5	74	81	7	205	42	8	12	36	1.72
15234959--15234994	18	2.0	18	94	0	63	30	33	8	27	1.86
15239046--15239151	53	2.0	52	98	1	203	45	5	7	40	1.56
15239159--15239252	45	2.1	45	83	0	116	44	5	5	44	1.49
15240496--15240614	43	2.8	43	84	2	141	26	19	34	20	1.96
15240619--15240673	19	2.8	19	97	2	101	21	0	45	32	1.52
15241027--15241270	39	6.3	39	87	0	317	23	16	22	37	1.94
15241027--15241270	117	2.1	117	89	1	364	23	16	22	37	1.94
15241662--15241751	39	2.3	39	90	0	135	24	21	22	32	1.98
15241960--15242024	21	3.0	21	74	14	62	27	26	21	24	1.99
15241701--15242286	302	1.9	302	91	0	958	28	22	19	30	1.98
15242307--15243132	422	2.0	422	95	0	1490	27	20	21	30	1.98
15251268--15251341	23	3.3	22	70	17	62	51	2	2	43	1.30
15256760--15256800	21	1.9	22	90	5	66	17	24	7	51	1.70
15257543--15257576	16	2.1	17	88	5	52	82	2	14	0	0.79
15258242--15258280	14	2.8	13	84	7	51	87	5	5	2	0.75
15258241--15258280	19	2.1	19	85	0	53	87	5	5	2	0.73
15270846--15271281	121	3.6	121	88	1	590	31	13	19	36	1.90
15270845--15271269	180	2.3	180	85	6	547	31	13	19	36	1.90
15270847--15271281	59	7.2	59	84	6	541	31	13	19	35	1.90
15272220--15272260	18	2.4	17	83	4	55	82	7	9	0	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15278703--15278739	18	2.0	19	94	5	67	16	0	8	75	1.02
15278709--15278748	18	2.2	18	86	0	53	22	0	5	72	1.04
15279138--15279391	62	4.1	61	83	6	305	33	19	14	32	1.93
15279186--15279289	31	3.3	32	71	11	99	33	19	10	36	1.86
15279138--15279392	124	2.1	124	85	3	343	32	19	14	32	1.92
15279278--15279381	31	3.4	29	70	13	75	31	20	16	31	1.94
15296228--15296259	11	2.9	11	100	0	64	65	0	0	34	0.93
15297344--15297416	35	2.1	35	84	0	92	32	9	23	34	1.87
15297557--15297603	22	2.1	22	96	0	85	34	10	44	10	1.74
15297649--15297686	16	2.4	17	82	13	53	78	0	13	7	0.94
15297677--15297743	31	2.1	32	83	10	84	49	11	20	17	1.79
15300290--15300330	21	2.0	21	85	9	57	24	2	2	70	1.11
15300822--15300903	42	2.0	41	83	7	103	46	10	0	42	1.39
15300855--15300948	45	2.1	45	84	7	120	46	8	1	43	1.41
15300890--15300974	32	2.7	31	73	15	77	49	4	1	44	1.30
15300923--15300976	18	2.9	18	86	5	72	48	3	1	46	1.30
15312704--15312747	22	2.0	22	86	0	61	43	13	9	34	1.76
15317988--15318030	21	2.0	21	86	8	61	62	9	0	27	1.25
15320259--15320305	22	2.0	24	84	15	64	19	25	6	48	1.72
15331064--15331110	22	2.0	24	84	15	64	19	25	6	48	1.72
15335818--15335890	35	2.1	35	86	0	101	30	31	10	27	1.91
15337229--15337285	26	2.2	26	93	0	96	56	5	12	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15337520--15337612	30	3.2	30	64	22	81	24	2	26	46	1.64
15337508--15337621	56	2.0	56	98	0	219	25	1	27	45	1.63
15337910--15338048	43	3.2	43	90	0	215	25	20	32	20	1.97
15344110--15344151	19	2.2	19	83	8	50	59	0	19	21	1.38
15344906--15345135	43	5.3	43	89	0	298	26	17	30	25	1.97
15344911--15345133	86	2.6	86	90	1	340	26	17	30	24	1.97
15345177--15345213	2	19.0	2	94	5	67	48	0	0	51	1.00
15346361--15346402	19	2.2	19	86	0	57	33	7	35	23	1.82
15358885--15359150	68	3.9	67	78	2	244	35	19	8	36	1.82
15367569--15367717	60	2.5	60	79	0	163	33	21	19	25	1.97
15384075--15384119	2	22.5	2	95	0	81	48	2	0	48	1.13
15384148--15384186	20	2.0	20	94	0	69	28	35	7	28	1.85
15384174--15384332	43	3.7	43	88	1	212	19	37	19	23	1.94
15387427--15387574	60	2.5	60	82	0	188	33	22	19	24	1.97
15387427--15387593	60	2.8	59	78	7	176	31	22	20	25	1.98
15387941--15388050	43	2.6	43	83	2	132	20	35	19	24	1.96
15396542--15396661	58	2.1	57	90	4	188	33	10	20	36	1.86
15405213--15405244	16	2.0	16	93	0	55	65	18	3	12	1.38
15409155--15409199	19	2.3	20	85	7	58	64	4	4	26	1.32
15409173--15409243	33	2.2	33	87	5	99	54	4	8	32	1.50
15410661--15410701	18	2.4	17	79	4	55	56	0	0	43	0.99
15412315--15412353	20	2.0	20	89	0	60	12	15	17	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15422030--15422143	23	5.0	23	77	7	99	28	23	20	27	1.99
15427927--15428138	105	2.0	106	87	2	302	33	23	11	30	1.91
15431573--15431629	22	2.6	22	94	0	96	22	24	26	26	2.00
15435466--15435506	21	2.0	21	85	4	57	41	9	34	14	1.79
15441574--15441621	21	2.3	20	75	10	51	16	22	4	56	1.58
15443485--15443534	19	2.6	19	75	12	57	14	38	6	42	1.70
15444189--15444314	42	3.0	42	84	0	162	21	20	31	26	1.98
15447198--15447260	22	2.9	21	85	2	81	30	22	22	25	1.99
15462697--15462736	6	6.7	6	88	0	53	2	27	0	70	1.01
15468661--15468686	13	2.0	13	100	0	52	46	0	7	46	1.31
15476157--15476282	42	3.0	42	82	0	171	23	30	23	23	1.99
15480111--15480147	13	2.8	13	95	0	65	45	32	5	16	1.70
15480805--15480842	20	2.0	20	89	5	60	21	23	15	39	1.92
15481628--15481746	43	2.8	43	89	2	177	21	21	37	19	1.94
15481638--15481759	43	2.8	43	88	2	174	22	18	39	18	1.92
15482093--15482178	39	2.2	40	82	2	102	24	18	23	33	1.97
15488513--15488595	25	3.2	25	62	12	58	26	42	12	19	1.86
15488508--15488673	54	3.1	54	92	0	278	26	40	12	19	1.88
15492617--15492675	23	2.6	23	91	0	91	30	47	3	18	1.65
15492667--15492832	43	3.9	42	81	6	172	24	34	18	22	1.96
15492685--15492842	86	1.8	86	84	0	217	24	34	18	21	1.96
15495799--15495855	22	2.7	21	86	5	80	73	0	26	0	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15510685--15510722	20	1.9	20	100	0	76	28	5	21	44	1.73
15519599--15519639	21	1.9	22	90	5	66	51	7	24	17	1.70
15519599--15519643	20	2.2	21	84	11	58	55	6	22	15	1.63
15519597--15519644	21	2.3	20	79	10	60	56	6	22	14	1.61
15522171--15522225	25	2.2	25	90	3	85	30	20	27	21	1.98
15523402--15523651	35	7.2	35	79	3	209	38	5	12	44	1.65
15523422--15523651	71	3.3	70	78	2	244	37	6	13	43	1.68
15524567--15524689	23	5.3	23	77	9	99	34	22	16	26	1.95
15525754--15525946	37	5.2	37	94	2	327	25	36	9	27	1.88
15534120--15534173	28	2.0	27	85	3	72	25	20	20	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66