genome.fa.s6.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  21  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7001475--7001527	28	1.9	27	88	3	79	32	22	15	30	1.94
7016274--7016457	2	92.0	2	100	0	368	50	0	50	0	1.00
7020084--7020129	20	2.3	20	92	0	74	30	4	19	45	1.70
7022799--7022827	15	1.9	15	100	0	58	34	20	27	17	1.95
7025303--7025342	19	2.0	20	90	4	64	45	25	0	30	1.54
7025749--7025979	36	6.5	35	84	2	264	37	6	10	45	1.66
7025729--7025997	36	7.7	35	82	4	249	37	6	10	44	1.65
7037553--7037590	15	2.5	15	84	16	51	52	5	0	42	1.24
7037617--7037664	2	24.5	2	91	4	80	50	2	0	47	1.12
7037889--7038606	375	1.9	375	88	1	1098	40	8	8	42	1.65
7038266--7038900	343	1.8	345	88	2	981	39	8	8	43	1.65
7038643--7038696	15	3.4	15	80	17	56	50	7	0	42	1.30
7046708--7046913	34	5.9	34	76	9	171	25	16	23	33	1.96
7046713--7046862	75	2.0	75	88	0	219	25	18	24	32	1.97
7048159--7048206	4	12.0	4	86	0	69	45	27	4	22	1.70
7048210--7048236	2	13.5	2	100	0	54	51	48	0	0	1.00
7053761--7053806	20	2.3	20	92	0	74	43	21	6	28	1.77
7055252--7055311	31	1.9	32	83	10	79	38	1	8	51	1.42
7057679--7057784	52	2.0	52	96	0	194	26	19	13	40	1.88
7061085--7061130	19	2.4	20	82	10	60	54	0	2	43	1.12
7061486--7061526	2	20.5	2	94	0	73	51	0	0	48	1.00
7061709--7061743	2	17.5	2	93	0	61	48	0	2	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7062367--7062422	27	2.1	27	96	0	103	48	17	26	7	1.73
7066006--7066061	27	2.1	27	96	0	103	7	26	17	48	1.73
7066256--7066335	34	2.4	32	79	10	97	35	25	10	30	1.88
7066685--7066736	2	26.0	2	100	0	104	50	0	0	50	1.00
7070852--7070891	12	3.5	11	87	12	55	52	15	0	32	1.43
7070851--7070888	10	3.2	12	85	14	53	47	15	0	36	1.46
7070859--7070896	12	3.2	12	85	10	51	50	23	0	26	1.50
7078118--7078183	30	2.2	30	91	2	107	30	0	3	66	1.06
7079392--7079428	2	18.5	2	100	0	74	51	0	0	48	1.00
7090027--7090064	19	2.0	19	94	0	67	39	31	0	28	1.57
7103605--7103639	18	2.1	16	89	10	52	71	0	11	17	1.14
7116435--7116480	19	2.4	20	82	10	60	54	0	2	43	1.12
7123434--7123478	20	2.2	20	100	0	90	40	15	8	35	1.79
7128744--7128784	2	21.0	2	95	5	75	51	0	0	48	1.00
7130326--7130357	16	2.0	16	93	0	55	12	3	18	65	1.38
7131482--7131744	68	3.9	68	79	7	250	35	9	19	35	1.85
7131906--7132003	31	3.2	31	83	2	108	26	20	29	23	1.99
7134698--7134773	29	2.6	29	85	4	98	30	10	13	46	1.76
7138783--7138813	2	15.5	2	93	0	53	51	0	0	48	1.00
7138927--7139029	38	2.7	38	86	3	125	23	17	36	22	1.94
7151929--7151982	2	27.0	2	85	14	76	46	0	3	50	1.19
7151929--7151984	29	1.9	29	96	0	103	46	0	3	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7154689--7154719	15	2.0	16	93	6	55	48	6	19	25	1.72
7158004--7158041	12	2.9	13	85	11	51	42	0	0	57	0.98
7160792--7160991	84	2.4	83	81	8	230	31	12	11	45	1.78
7162144--7162215	30	2.4	30	83	0	90	50	6	12	30	1.66
7162697--7162772	36	2.1	36	85	0	98	39	3	3	52	1.38
7162945--7163031	36	2.4	36	84	5	124	31	13	10	44	1.78
7163800--7163825	2	13.0	2	100	0	52	50	0	0	50	1.00
7164479--7164560	29	2.8	29	84	1	92	36	15	10	36	1.83
7164495--7164560	30	2.2	29	89	2	96	37	18	10	33	1.85
7164546--7164593	24	1.9	26	83	8	64	35	10	12	41	1.77
7164495--7164622	29	4.6	29	74	13	117	33	14	10	41	1.80
7170749--7170800	26	2.0	26	88	0	77	19	15	7	57	1.62
7171111--7171156	23	2.0	23	91	4	76	32	4	30	32	1.77
7171222--7171280	23	2.6	23	83	0	73	25	15	25	33	1.95
7171189--7171357	92	1.8	92	84	5	234	29	11	24	34	1.90
7171374--7171500	23	5.5	23	69	7	71	26	12	28	32	1.93
7179378--7179628	117	2.1	119	89	2	382	45	26	10	17	1.80
7181026--7181150	26	5.1	25	65	14	82	39	20	12	27	1.89
7180996--7181150	48	3.2	48	89	0	229	39	22	12	25	1.90
7181044--7181126	22	3.6	22	69	12	67	37	22	15	24	1.93
7185023--7185055	16	2.0	17	88	5	50	18	12	21	48	1.80
7185504--7185529	11	2.4	11	100	0	52	46	7	30	15	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7185557--7185690	50	2.7	50	94	2	225	30	18	19	31	1.96
7188022--7188098	30	2.5	31	87	2	102	33	11	2	51	1.52
7188172--7188238	28	2.2	31	84	12	86	38	11	17	31	1.87
7188955--7189029	13	6.0	12	74	13	53	72	6	1	20	1.15
7196790--7196826	17	2.1	19	90	10	60	54	8	0	37	1.30
7196790--7196826	19	2.1	19	85	10	51	54	8	0	37	1.30
7202329--7202548	23	9.9	22	82	6	239	29	11	20	38	1.88
7202341--7202550	44	4.7	45	89	3	275	29	11	20	39	1.87
7202374--7202491	10	10.8	11	67	16	68	26	11	20	42	1.85
7202332--7202548	88	2.4	89	84	7	305	29	11	20	38	1.88
7209373--7209470	47	2.1	47	100	0	196	39	0	14	45	1.45
7210071--7210273	108	1.9	108	94	0	361	44	5	14	34	1.68
7210811--7210882	31	2.3	31	87	0	99	23	15	37	23	1.93
7210776--7211063	107	2.7	107	83	4	357	26	15	27	30	1.96
7211025--7211093	31	2.2	31	92	0	111	30	8	33	27	1.87
7210943--7211339	138	2.9	138	82	3	467	26	14	28	30	1.95
7211167--7211239	31	2.4	30	80	11	76	28	13	30	27	1.94
7211187--7211265	31	2.5	31	85	0	95	26	13	27	31	1.94
7217218--7217437	71	3.1	71	79	5	257	36	6	14	42	1.72
7217168--7217437	35	7.7	35	80	4	260	38	7	12	42	1.70
7217168--7217417	107	2.4	105	82	6	321	38	6	12	43	1.68
7219589--7219625	18	2.1	18	94	0	65	27	16	21	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7227673--7227730	30	1.9	31	92	3	100	53	10	5	31	1.57
7228257--7228324	35	1.9	35	84	0	91	32	5	14	47	1.69
7230942--7231000	28	2.1	28	87	0	82	44	20	15	20	1.87
7234093--7234137	19	2.3	20	96	3	83	26	2	24	46	1.64
7234182--7234232	27	1.9	26	84	11	68	23	17	29	29	1.97
7235679--7235722	2	22.0	2	100	0	88	50	0	0	50	1.00
7240805--7240845	19	2.2	19	86	8	57	19	26	4	48	1.69
7247081--7247196	35	3.3	35	77	1	124	43	19	14	22	1.88
7247355--7247423	28	2.4	28	87	2	93	14	27	10	47	1.76
7256834--7256889	3	18.7	3	92	0	67	0	23	33	42	1.54
7260144--7260208	16	4.1	16	80	5	71	69	3	0	27	1.03
7260137--7260208	31	2.3	31	83	9	85	68	4	0	27	1.08
7260166--7260208	5	8.4	5	79	5	50	72	4	0	23	1.04
7261144--7261176	17	2.1	16	88	11	50	30	0	0	69	0.88
7266108--7266165	2	29.0	2	96	0	107	48	0	1	50	1.11
7268349--7268399	2	25.5	2	95	0	93	47	0	0	52	1.00
7273772--7273922	35	4.3	35	81	5	164	45	11	5	37	1.64
7280157--7280188	15	2.1	16	94	5	57	43	9	9	37	1.69
7280947--7281173	71	3.2	70	79	2	247	44	11	7	37	1.68
7280947--7281202	35	7.3	35	77	4	205	45	11	6	36	1.66
7280947--7281173	107	2.1	105	82	3	267	44	11	7	37	1.68
7281149--7281188	19	2.2	17	86	8	53	50	10	2	37	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7312806--7312871	21	3.0	22	77	4	80	22	13	22	40	1.89
7312918--7313044	22	5.8	22	69	6	69	41	21	11	25	1.87
7313036--7313136	21	4.8	21	76	2	85	42	23	13	19	1.87
7313009--7313177	64	2.7	63	88	1	239	42	21	13	22	1.88
7313304--7313407	50	2.1	50	83	3	129	38	18	6	36	1.77
7315032--7315070	20	2.0	20	89	0	60	33	15	7	43	1.75
7315777--7315807	15	2.1	15	93	0	53	25	35	6	32	1.82
7318173--7318207	2	17.5	2	93	0	61	54	0	45	0	0.99
7323911--7323962	22	2.3	23	81	12	56	50	7	1	40	1.42
7324474--7324504	3	10.3	3	100	0	62	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66