genome.fa.s6.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  64  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24960458--24960589	35	3.8	35	82	0	138	19	15	19	45	1.85
24960458--24960589	70	1.9	70	82	3	167	19	15	19	45	1.85
24976512--24976537	2	13.0	2	100	0	52	50	0	0	50	1.00
24980543--24980574	15	2.0	17	88	11	50	50	0	6	43	1.27
24986850--24986913	28	2.3	28	78	5	67	39	3	0	57	1.14
25016234--25016289	29	1.9	29	88	0	85	30	5	12	51	1.61
25032863--25032966	51	2.0	51	92	3	174	22	11	28	37	1.89
25036388--25036439	16	3.4	16	68	10	54	48	7	0	44	1.31
25053876--25054559	228	3.0	228	82	1	708	28	23	27	20	1.99
25093778--25093822	16	2.8	17	83	6	58	42	4	2	51	1.34
25094176--25094219	18	2.6	16	80	16	52	9	27	0	63	1.24
25100016--25100041	2	13.0	2	100	0	52	50	0	0	50	1.00
25103280--25103343	31	2.1	31	100	0	128	15	20	32	31	1.94
25105327--25105373	24	1.9	25	91	4	78	42	2	2	53	1.25
25105323--25105382	24	2.5	24	80	2	75	46	1	1	50	1.21
25105537--25105566	13	2.2	14	94	5	53	63	3	0	33	1.11
25105858--25105895	18	2.1	18	90	0	58	50	7	10	31	1.66
25107767--25107804	20	1.9	20	94	0	67	71	0	0	28	0.87
25108188--25108233	18	2.4	20	85	7	60	50	0	0	50	1.00
25110899--25111027	68	1.9	68	93	0	222	37	4	6	50	1.50
25118064--25118089	13	2.0	13	100	0	52	46	0	0	53	1.00
25118084--25118119	18	2.0	18	88	0	54	50	0	2	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25120915--25120962	24	1.9	24	87	8	69	31	0	2	66	1.03
25121167--25121214	15	3.2	15	75	0	60	41	12	0	45	1.42
25145692--25145718	2	13.5	2	100	0	54	0	51	0	48	1.00
25150862--25150887	2	13.0	2	100	0	52	50	0	0	50	1.00
25213030--25213057	3	9.3	3	100	0	56	0	32	0	67	0.91
25236366--25236413	24	1.9	26	87	8	73	79	2	16	2	0.93
25240962--25241000	15	2.6	15	91	0	60	38	5	20	35	1.75
25241223--25241270	6	7.7	6	77	9	51	22	2	0	75	0.91
25241218--25241303	33	2.6	33	87	3	120	27	2	0	69	1.00
25241365--25241409	15	3.1	15	81	15	58	33	2	0	64	1.06
25245969--25245995	5	5.4	5	100	0	54	59	0	40	0	0.98
25251637--25251681	2	22.5	2	100	0	90	48	0	0	51	1.00
25258834--25258927	45	2.1	45	81	0	107	43	6	5	44	1.52
25258921--25259078	46	3.5	43	79	12	149	46	2	3	47	1.31
25258921--25259078	22	7.0	23	69	14	105	46	2	3	47	1.31
25258944--25259094	44	3.3	47	76	14	147	43	2	3	50	1.32
25259383--25259416	11	3.0	12	91	8	54	14	23	0	61	1.33
25259383--25259420	16	2.4	16	87	12	53	13	23	0	63	1.30
25266036--25266082	22	2.1	23	92	4	78	42	4	0	53	1.20
25267209--25267259	25	2.0	26	88	7	79	7	5	15	70	1.30
25282572--25282831	138	1.9	138	95	0	466	31	20	11	36	1.89
25285318--25285346	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25285346--25285397	2	25.5	2	96	3	95	1	0	48	50	1.12
25294102--25294152	25	2.1	24	85	3	66	33	5	0	60	1.21
25295923--25295978	29	1.9	29	88	0	85	50	7	10	32	1.64
25297986--25298546	208	2.7	208	89	1	856	36	12	10	40	1.77
25300509--25300543	18	1.9	18	88	0	52	40	0	51	8	1.33
25312249--25312330	25	3.2	25	84	5	94	25	19	37	17	1.93
25314590--25314731	42	3.4	41	78	7	142	21	31	23	23	1.98
25318032--25318107	39	1.9	39	97	0	143	38	5	21	35	1.76
25318034--25318129	39	2.6	37	87	8	126	39	5	22	32	1.76
25321517--25321556	2	20.0	2	100	0	80	50	0	0	50	1.00
25328218--25328243	2	13.0	2	100	0	52	50	0	50	0	1.00
25358674--25358924	63	4.0	63	79	3	297	20	19	26	32	1.97
25358674--25358909	126	1.9	126	86	0	337	19	19	27	33	1.96
25358674--25358919	127	1.9	126	85	0	330	20	19	27	32	1.97
25371640--25371676	17	2.2	17	90	4	58	43	18	32	5	1.73
25407525--25407551	6	4.5	6	100	0	54	0	18	48	33	1.49
25407554--25407600	6	7.8	6	90	0	67	10	2	70	17	1.26
25407529--25407569	21	2.0	21	85	0	55	4	14	51	29	1.63
25410897--25410929	15	2.2	15	89	10	50	18	0	66	15	1.25
25411078--25411166	6	14.8	6	81	4	54	15	4	61	17	1.50
25411228--25411256	3	9.7	3	100	0	58	31	0	68	0	0.89
25433791--25433816	5	5.2	5	100	0	52	19	19	38	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25449927--25451594	420	4.0	418	89	2	2447	36	16	10	37	1.82
25452214--25452289	22	3.4	21	74	13	64	13	14	15	56	1.67
25453019--25453358	169	2.0	169	94	0	590	27	16	23	32	1.96
25453527--25453752	113	2.0	113	89	1	346	28	9	16	45	1.79
25465776--25465813	20	1.9	20	88	0	58	47	18	0	34	1.49
25488354--25488385	16	2.0	16	100	0	64	31	18	12	37	1.88
25492790--25492829	2	20.0	2	100	0	80	50	0	0	50	1.00
25521393--25521438	23	1.9	23	82	8	56	43	2	2	52	1.25
25537580--25537615	2	18.0	2	100	0	72	0	50	0	50	1.00
25539423--25539483	25	2.5	25	75	17	65	57	0	4	37	1.20
25539421--25539483	26	2.5	26	76	16	71	57	0	4	38	1.20
25555964--25556225	131	2.0	131	92	0	434	35	15	20	28	1.93
25559483--25559559	2	40.0	2	75	17	65	46	0	46	5	1.25
25559482--25559571	46	2.0	45	100	0	171	44	0	45	8	1.35
25562187--25562247	30	2.0	30	93	0	104	37	18	11	32	1.86
25562348--25562401	21	2.4	23	84	6	67	53	0	3	42	1.18
25565264--25565358	30	3.3	30	79	4	97	36	7	14	41	1.74
25565410--25565516	24	4.5	24	90	0	133	22	12	18	46	1.82
25565314--25565476	80	2.1	79	86	6	224	29	12	16	41	1.85
25565486--25565546	31	2.0	31	93	0	104	19	13	19	47	1.82
25565573--25565652	24	3.3	24	79	6	90	33	15	11	40	1.82
25573554--25573608	27	2.1	26	82	3	65	36	20	7	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25573766--25573851	30	2.9	29	76	13	77	46	1	0	52	1.08
25573766--25573843	31	2.6	31	80	13	83	44	0	0	55	0.99
25575926--25575967	18	2.2	20	80	16	54	38	0	0	61	0.96
25578024--25578053	14	2.1	14	93	0	51	16	30	20	33	1.94
25590675--25590700	7	3.7	7	100	0	52	73	0	26	0	0.84
25600865--25600920	20	2.8	20	73	15	62	44	0	1	53	1.11
25605475--25605506	2	16.0	2	100	0	64	50	0	50	0	1.00
25606447--25606481	3	11.7	3	87	0	52	31	0	37	31	1.58
25606827--25606854	13	2.2	13	100	0	56	32	35	32	0	1.58
25616166--25616211	25	1.9	24	91	8	76	41	6	13	39	1.70
25621555--25621657	48	2.2	48	87	1	145	43	14	0	40	1.52
25621601--25621794	67	2.9	67	86	1	255	45	11	3	38	1.58
25629273--25629313	19	2.3	19	87	8	59	48	0	2	48	1.14
25630181--25630218	6	6.3	6	88	11	60	0	31	0	68	0.90
25630176--25630214	12	3.2	12	89	10	62	0	33	0	66	0.92
25630181--25630232	18	2.8	18	80	16	61	1	30	1	65	1.14
25633583--25633623	2	20.5	2	90	9	66	48	2	0	48	1.14
25665288--25665340	3	17.0	3	84	3	61	30	0	37	32	1.58
25669706--25669840	68	2.0	69	91	2	218	37	20	11	31	1.88
25669819--25669846	2	14.0	2	100	0	56	50	0	0	50	1.00
25684807--25684844	3	12.7	3	88	0	58	34	0	65	0	0.93
25685163--25685198	5	7.2	5	93	0	63	77	0	22	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25685531--25685598	25	2.8	25	71	20	72	48	1	1	48	1.19
25687288--25687345	27	2.1	27	100	0	116	31	10	10	48	1.71
25694963--25695007	2	22.5	2	100	0	90	48	0	0	51	1.00
25720435--25720485	19	2.6	20	82	17	63	33	0	1	64	1.05
25727967--25728119	73	2.0	74	92	7	254	35	14	22	27	1.93
25770631--25770709	24	3.2	24	68	16	70	30	11	21	36	1.89
25770638--25770719	27	3.1	27	68	16	82	35	9	21	32	1.87
25773084--25773113	11	2.8	11	95	5	53	6	0	0	93	0.35
25773082--25773111	14	2.1	15	93	6	53	10	0	0	90	0.47
25776327--25776359	3	11.0	3	100	0	66	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66