genome.fa.s6.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  52  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18871481--18871973	247	2.0	245	88	2	729	45	10	15	28	1.79
18872459--18872538	39	2.1	39	95	0	142	38	20	15	26	1.91
18874618--18874668	20	2.5	20	87	6	68	25	27	13	33	1.94
18882969--18883177	26	8.4	26	80	10	204	23	13	25	37	1.91
18882944--18883174	73	3.2	72	87	4	311	23	14	24	37	1.92
18883034--18883245	48	4.4	49	76	11	172	24	13	25	36	1.92
18882977--18883189	74	2.9	74	90	2	313	23	13	25	37	1.91
18883162--18883257	23	4.2	23	84	4	88	28	13	23	34	1.93
18883185--18883262	23	3.4	23	87	0	102	28	12	24	34	1.92
18883286--18883354	22	3.2	22	73	8	70	43	20	11	24	1.85
18883278--18883345	21	3.2	21	76	2	64	48	17	10	23	1.78
18883441--18883475	2	17.5	2	100	0	70	51	48	0	0	1.00
18885255--18885320	34	1.9	34	90	0	105	15	39	6	39	1.72
18890893--18890976	43	2.0	43	92	0	141	38	17	23	20	1.93
18897974--18898035	24	2.7	23	68	24	58	37	20	8	33	1.83
18897956--18898047	46	2.0	46	85	8	125	34	19	10	34	1.87
18898084--18898278	66	3.0	64	73	13	164	32	18	15	32	1.93
18900873--18900918	14	3.3	14	82	14	51	76	0	2	21	0.90
18913452--18913505	20	2.7	20	78	18	58	64	0	11	24	1.25
18919552--18919583	2	16.0	2	93	0	55	50	3	0	46	1.17
18920835--18920867	2	17.0	2	87	6	50	3	0	45	51	1.16
18927821--18927859	21	2.0	20	85	10	53	51	0	33	15	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18941453--18941485	10	3.4	10	91	4	50	66	0	0	33	0.92
18944630--18944665	3	12.0	3	87	0	54	5	0	30	63	1.17
18950041--18950139	35	2.8	36	83	3	112	41	20	13	25	1.88
18950346--18950431	29	3.0	29	73	0	82	18	25	9	46	1.79
18959681--18959714	17	2.1	17	88	5	52	70	0	17	11	1.16
18962647--18962681	15	2.3	15	90	0	52	25	25	20	28	1.99
18980780--18980832	26	2.0	27	96	3	99	26	15	22	35	1.93
18984947--18985008	31	2.0	31	87	0	88	37	17	6	38	1.76
18987596--18987728	56	2.4	56	100	0	266	23	12	6	58	1.55
18998303--18998358	22	2.6	22	86	5	80	55	8	14	21	1.66
19000391--19000462	30	2.4	30	90	0	108	33	31	8	26	1.86
19000671--19000727	30	1.9	30	85	7	80	8	45	15	29	1.77
19000720--19000784	12	5.2	12	75	14	60	20	38	7	33	1.81
19000726--19000766	21	2.0	21	90	9	66	19	36	9	34	1.85
19000724--19000790	18	3.6	18	75	18	55	22	37	8	31	1.85
19000957--19001018	30	2.1	30	84	0	79	16	14	37	32	1.89
19004430--19004465	2	18.0	2	100	0	72	50	0	0	50	1.00
19016141--19016171	5	6.2	5	96	0	53	41	3	19	35	1.67
19020959--19021015	28	2.0	28	100	0	114	43	10	7	38	1.66
19031049--19031099	16	3.3	15	78	8	57	76	13	5	3	1.11
19037108--19037139	6	5.3	6	100	0	64	0	31	0	68	0.90
19038176--19038204	13	2.1	14	93	6	51	75	3	0	20	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19040035--19040081	21	2.2	21	100	0	94	23	8	23	44	1.80
19040436--19040520	32	2.6	31	87	7	116	29	1	0	69	0.96
19040441--19040526	6	13.5	6	73	7	55	27	1	0	70	0.94
19040466--19040617	39	3.6	39	69	25	114	28	1	1	67	1.09
19040545--19040625	15	5.6	14	73	12	58	25	1	1	71	1.01
19040545--19040622	5	15.2	5	71	12	52	25	1	1	71	1.01
19040545--19040621	7	11.8	6	75	20	50	24	1	1	72	1.00
19040423--19040621	32	5.8	32	70	19	102	28	2	1	67	1.10
19040961--19040994	15	2.3	15	94	0	59	47	2	11	38	1.55
19041206--19041302	33	2.8	34	81	10	99	32	3	0	63	1.10
19046209--19046249	19	2.3	18	84	12	50	31	0	2	65	1.05
19061960--19062028	30	2.3	31	82	2	77	28	2	2	65	1.22
19061996--19062049	23	2.4	23	81	3	65	38	0	3	57	1.17
19080216--19080274	2	29.5	2	100	0	118	49	0	0	50	1.00
19087527--19087714	35	5.4	35	82	8	208	40	5	7	45	1.58
19087864--19087923	28	2.1	29	87	9	88	30	15	21	33	1.94
19088828--19088857	15	2.0	15	100	0	60	20	0	6	73	1.05
19089354--19089419	33	2.0	33	93	0	114	40	10	19	28	1.85
19090000--19090101	20	5.0	22	75	24	82	67	2	0	28	1.11
19090064--19090107	10	4.4	10	83	11	54	70	0	0	29	0.88
19090045--19090109	20	3.2	20	80	6	76	72	0	0	27	0.85
19090225--19090577	175	2.0	175	85	4	471	35	9	40	14	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19092469--19092628	72	2.1	75	87	5	227	26	19	15	39	1.91
19096696--19096781	30	2.9	29	81	5	100	61	1	1	36	1.11
19097633--19097691	31	1.9	31	92	0	100	37	10	20	32	1.86
19107350--19107376	2	13.5	2	100	0	54	51	0	48	0	1.00
19108322--19108369	18	2.6	19	76	3	53	56	2	2	39	1.23
19110432--19110497	31	2.1	31	94	0	114	42	15	3	39	1.62
19121818--19121874	27	2.2	26	81	12	64	52	5	1	40	1.34
19121833--19122105	132	2.1	131	88	4	401	55	3	1	39	1.27
19122218--19122275	27	2.1	27	87	0	80	51	1	1	44	1.21
19122235--19122292	27	2.1	27	81	6	64	58	0	0	41	0.98
19122260--19122305	12	3.7	13	80	5	51	63	0	0	36	0.95
19123721--19123797	24	3.2	24	100	0	154	35	28	3	32	1.76
19135074--19135173	35	3.1	30	81	16	103	53	2	0	45	1.12
19135109--19135153	15	3.1	14	81	18	56	53	0	0	46	1.00
19135080--19135145	22	3.0	22	70	16	64	54	1	0	43	1.09
19135220--19135375	74	2.1	73	85	4	206	50	7	4	38	1.50
19137526--19137580	27	2.0	28	85	3	76	34	3	0	61	1.13
19137843--19137891	20	2.4	20	77	12	55	42	0	4	53	1.20
19140110--19140139	2	15.0	2	92	0	51	50	3	0	46	1.18
19143487--19143539	27	2.0	27	92	0	88	60	1	5	32	1.31
19143829--19143905	15	5.1	15	69	17	52	46	0	0	53	1.00
19143732--19144011	133	2.1	133	82	9	310	40	0	4	55	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19143998--19144097	42	2.3	43	80	13	116	43	3	2	52	1.28
19144396--19144448	20	2.5	22	78	12	56	39	0	3	56	1.17
19144401--19144452	22	2.4	22	80	6	61	40	0	3	55	1.18
19147644--19147689	24	2.0	23	86	4	65	23	8	23	43	1.82
19148189--19148272	31	2.7	30	78	5	87	53	2	16	27	1.55
19149620--19149691	32	2.2	33	82	7	85	27	29	19	23	1.98
19149987--19150026	19	2.1	19	85	0	53	30	20	5	45	1.72
19150081--19150123	23	1.9	23	85	4	61	27	13	2	55	1.51
19153879--19154167	149	1.9	148	86	3	411	26	15	21	36	1.93
19154201--19154242	19	2.2	19	83	8	50	33	11	9	45	1.73
19154456--19154503	24	2.0	24	91	0	78	37	16	4	41	1.68
19154673--19154724	28	2.0	28	85	14	76	15	7	15	61	1.55
19174874--19174920	23	2.0	23	95	0	85	46	4	6	42	1.48
19178704--19178736	16	2.0	17	94	5	59	36	6	0	57	1.23
19184807--19184940	35	3.8	35	80	2	117	20	14	17	47	1.83
19192384--19192466	30	2.6	32	83	11	107	69	0	1	28	0.96
19192376--19192523	70	2.1	70	81	5	165	65	0	4	29	1.16
19197101--19197135	17	2.1	17	88	0	52	34	2	0	62	1.10
19202813--19202850	2	19.0	2	100	0	76	50	0	0	50	1.00
19202906--19202952	2	24.0	2	86	4	69	46	4	0	48	1.21
19206049--19206185	67	2.0	67	95	0	247	30	15	24	29	1.95
19215423--19215468	20	2.4	20	85	7	69	36	0	4	58	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19225130--19225160	2	15.5	2	100	0	62	48	0	0	51	1.00
19226811--19227431	208	2.9	213	84	5	819	47	4	7	41	1.50
19227368--19227428	23	2.6	23	78	17	63	50	0	4	44	1.23
19227375--19227428	23	2.5	21	80	14	65	50	0	5	44	1.25
19227411--19227464	27	2.0	26	86	10	74	48	3	0	48	1.19
19243264--19243294	2	15.5	2	93	0	53	51	0	48	0	1.00
19243457--19243508	26	2.0	25	85	3	68	57	3	38	0	1.17
19246806--19246956	6	25.8	6	85	5	157	50	11	0	38	1.38
19246804--19247126	18	17.7	18	75	8	208	47	9	4	38	1.55
19246808--19246956	10	14.9	10	81	10	126	50	11	0	38	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66