genome.fa.s6.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  5  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1676647--1677324	351	1.9	351	85	3	934	30	18	20	30	1.96
1682049--1682152	34	3.1	34	97	0	190	63	13	2	20	1.42
1682736--1683209	238	2.0	238	99	0	932	31	13	14	39	1.86
1684113--1684165	2	29.0	2	75	24	55	47	0	1	50	1.12
1684423--1684535	27	4.8	22	75	21	104	54	1	10	32	1.45
1684426--1684514	27	3.5	27	79	17	127	53	2	11	32	1.48
1684423--1684535	48	2.4	48	100	0	226	54	1	10	32	1.45
1684453--1684534	11	7.1	12	66	31	54	54	1	10	32	1.43
1686372--1686442	30	2.4	29	83	6	90	39	0	0	60	0.97
1687063--1687128	29	2.3	28	86	2	87	28	6	19	45	1.74
1687063--1687128	28	2.3	29	84	7	82	28	6	19	45	1.74
1688285--1688309	13	1.9	13	100	0	50	52	0	0	48	1.00
1697804--1697862	2	30.0	2	89	3	93	49	3	0	47	1.18
1697847--1698225	189	2.0	188	97	2	733	30	9	12	47	1.73
1698508--1698546	13	3.1	13	81	7	53	64	0	35	0	0.94
1698645--1698687	17	2.5	17	80	3	50	72	2	25	0	0.97
1699286--1699457	60	2.9	60	83	1	213	25	18	30	26	1.97
1703053--1703093	18	2.3	18	87	8	57	75	0	24	0	0.80
1703055--1703093	12	3.1	12	92	7	60	76	0	23	0	0.78
1703771--1703945	61	2.9	58	85	6	217	25	17	32	25	1.97
1707430--1707455	12	2.2	12	100	0	52	23	0	15	61	1.33
1711305--1711982	351	1.9	351	86	2	968	31	17	20	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1716219--1716267	6	8.8	6	74	17	52	48	0	34	16	1.46
1716219--1716250	15	2.1	15	94	0	55	50	0	31	18	1.48
1716974--1717022	6	8.8	6	74	17	52	48	0	34	16	1.46
1716974--1717005	15	2.1	15	94	0	55	50	0	31	18	1.48
1724480--1724528	6	8.8	6	74	17	52	48	0	34	16	1.46
1724480--1724511	15	2.1	15	94	0	55	50	0	31	18	1.48
1725009--1725046	13	2.9	13	81	11	51	31	5	0	63	1.17
1730904--1730960	19	3.0	19	97	0	105	28	0	29	42	1.56
1740186--1740210	13	1.9	13	100	0	50	48	0	0	52	1.00
1742971--1743034	28	2.2	29	83	2	76	43	20	7	28	1.79
1747298--1747359	19	3.2	20	75	13	58	40	4	22	32	1.75
1747741--1748157	208	2.0	207	98	1	809	36	16	9	37	1.82
1750286--1750334	25	2.0	25	84	8	64	73	2	6	18	1.14
1755162--1755210	24	2.0	26	88	8	75	71	2	0	26	0.97
1756163--1756187	13	1.9	13	100	0	50	52	0	0	48	1.00
1761998--1762022	3	8.3	3	100	0	50	36	0	64	0	0.94
1764850--1764932	44	1.9	43	85	11	116	46	8	0	44	1.33
1764904--1764947	23	2.0	22	81	4	52	43	0	4	52	1.22
1764992--1765063	33	2.2	32	83	9	85	47	8	0	44	1.33
1766038--1766089	22	2.4	22	90	0	86	53	5	32	7	1.53
1766563--1766600	19	2.0	19	89	0	58	31	0	26	42	1.56
1767973--1767997	13	1.9	13	100	0	50	44	0	8	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1769672--1769717	20	2.3	20	92	0	74	30	4	19	45	1.70
1775643--1775877	77	3.0	76	79	9	249	40	3	10	45	1.57
1781058--1781110	27	2.0	26	82	10	63	60	0	3	35	1.15
1787664--1787752	23	3.8	23	92	1	124	44	8	8	37	1.67
1792326--1792381	20	3.1	19	85	10	64	69	12	3	14	1.31
1794068--1794104	2	20.0	2	84	15	53	51	0	0	48	1.00
1796869--1796931	28	2.2	28	97	0	117	41	6	3	49	1.44
1797950--1797995	20	2.3	20	92	0	74	28	6	21	43	1.77
1799329--1799364	4	8.5	4	93	6	54	75	0	25	0	0.81
1799329--1799373	12	3.4	13	88	11	65	75	0	24	0	0.80
1799331--1799374	5	9.6	5	92	2	51	77	0	22	0	0.77
1799391--1799452	25	2.4	25	83	5	70	46	20	19	12	1.83
1799409--1799466	25	2.3	24	85	11	73	51	12	18	17	1.75
1803000--1803032	14	2.4	14	90	10	50	81	0	3	15	0.80
1803420--1803462	13	3.2	13	81	15	52	83	4	2	9	0.87
1803426--1803464	20	1.9	21	89	5	62	82	5	5	7	0.96
1808303--1808334	12	2.6	13	85	14	50	65	0	3	31	1.08
1810316--1810357	2	21.0	2	95	0	75	47	0	2	50	1.14
1824819--1824869	21	2.4	21	96	0	93	49	7	7	35	1.61
1825231--1825271	2	20.5	2	100	0	82	0	48	0	51	1.00
1827455--1827522	35	1.9	34	82	5	82	35	4	4	55	1.40
1827710--1827765	24	2.3	24	84	6	69	50	1	0	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1828554--1828621	36	1.9	35	81	3	82	52	1	7	38	1.38
1830975--1831053	32	2.5	33	84	10	94	49	0	6	44	1.28
1830998--1831069	33	2.3	32	83	11	87	43	1	6	48	1.38
1831209--1831261	24	2.2	24	83	6	63	35	3	3	56	1.35
1841738--1841762	13	1.9	13	100	0	50	44	0	0	56	0.99
1863956--1863984	13	2.2	13	100	0	58	20	24	17	37	1.93
1865012--1865109	51	1.9	51	100	0	196	42	12	18	26	1.85
1873507--1873533	2	13.5	2	100	0	54	51	48	0	0	1.00
1879721--1879765	22	2.0	23	86	4	65	75	20	4	0	0.97
1882358--1882388	2	15.5	2	100	0	62	48	0	0	51	1.00
1891562--1891592	2	15.5	2	100	0	62	51	0	48	0	1.00
1898314--1898347	2	17.0	2	100	0	68	50	0	0	50	1.00
1899099--1899138	15	2.4	17	84	16	57	50	0	10	40	1.36
1899921--1899962	16	2.4	18	76	15	52	40	14	9	35	1.78
1899939--1900027	36	2.5	35	83	3	126	40	12	10	37	1.77
1899939--1900057	36	3.5	36	78	8	110	43	10	8	37	1.69
1900057--1900119	24	2.7	24	78	14	69	71	7	1	19	1.19
1900536--1900602	2	33.0	2	76	8	64	44	7	1	46	1.40
1900527--1900569	12	3.7	12	81	6	61	41	6	4	46	1.51
1904838--1905240	200	2.0	199	85	5	546	38	12	7	40	1.72
1908916--1908955	21	1.9	21	84	0	53	10	32	2	55	1.47
1911092--1911209	45	2.6	46	90	4	186	46	20	7	25	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1917178--1917215	20	1.9	20	94	0	67	52	0	0	47	1.00
1917171--1917223	28	1.9	28	88	11	83	50	0	0	49	1.00
1926249--1926301	3	17.7	3	84	0	70	39	30	28	1	1.67
1933130--1933166	1	37.0	1	94	0	65	97	0	2	0	0.18
1936377--1936466	30	3.0	30	83	4	101	33	1	4	61	1.23
1936394--1936466	30	2.4	31	88	2	103	32	1	5	60	1.28
1936690--1936733	22	2.0	22	82	8	54	45	2	6	45	1.42
1936961--1937086	65	1.9	66	88	3	191	42	19	6	31	1.76
1945465--1945548	44	1.9	44	97	0	159	36	15	20	27	1.93
1950530--1950566	17	2.1	18	90	5	58	54	13	5	27	1.61
1955140--1955191	16	3.3	16	67	5	52	42	3	3	50	1.39
1955140--1955204	31	2.1	31	85	0	85	44	4	6	44	1.49
1962230--1962289	22	2.7	22	89	2	93	5	38	5	51	1.45
1962657--1962719	26	2.4	26	76	5	65	49	1	1	47	1.20
1966754--1966990	45	5.2	47	69	16	131	31	11	19	37	1.88
1966833--1966909	23	3.4	22	69	5	73	35	15	11	37	1.84
1966836--1966924	46	2.0	45	86	6	126	38	13	11	37	1.81
1966914--1966969	22	2.5	22	82	2	67	28	7	28	35	1.84
1966956--1967035	23	3.5	23	68	11	65	33	10	20	36	1.86
1969319--1969406	38	2.3	39	76	5	90	44	13	4	37	1.65
1970817--1970843	2	13.5	2	100	0	54	48	0	0	51	1.00
1970995--1971050	29	1.9	29	89	7	87	30	14	5	50	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1972168--1972453	23	12.5	23	71	2	144	32	12	19	36	1.89
1972172--1972442	46	5.9	46	72	7	212	32	11	19	36	1.88
1972193--1972464	92	3.0	92	75	6	282	32	11	20	36	1.88
1978919--1979022	52	2.0	52	98	0	199	20	12	25	42	1.87
1981532--1981596	30	2.2	30	86	5	87	46	4	13	35	1.64
1991883--1991974	30	3.1	28	72	10	76	31	11	10	45	1.76
2000028--2000065	14	2.9	13	81	11	51	36	0	0	63	0.95
2006381--2006405	5	5.0	5	100	0	50	0	60	0	40	0.97
2011988--2012120	67	2.0	67	93	0	230	23	14	19	42	1.88
2015056--2015136	38	2.1	38	93	0	135	30	11	44	13	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66