genome.fa.s6.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  22  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7327264--7327342	40	2.0	40	94	0	140	34	25	22	17	1.96
7327650--7327705	29	1.9	30	85	10	80	66	7	5	21	1.37
7336469--7336496	13	2.2	13	100	0	56	39	7	28	25	1.82
7338970--7339019	21	2.3	23	82	10	68	74	0	0	26	0.83
7338971--7339020	22	2.3	22	89	3	75	72	0	0	28	0.86
7338988--7339072	13	6.4	13	70	20	50	61	0	0	38	0.96
7339015--7339085	20	3.5	19	72	12	61	59	0	0	40	0.98
7339122--7339172	26	1.9	27	88	11	79	56	0	1	41	1.10
7339124--7339179	26	2.2	26	81	12	62	62	0	1	35	1.06
7339226--7339268	21	2.0	21	86	9	59	62	0	0	37	0.95
7339341--7339642	150	2.0	150	90	0	478	43	16	9	30	1.80
7363342--7363460	37	3.2	37	90	0	193	24	35	10	30	1.88
7363600--7364547	471	2.0	471	97	0	1808	35	21	10	31	1.89
7369770--7369805	2	18.0	2	100	0	72	50	0	0	50	1.00
7370589--7370637	2	24.5	2	100	0	98	48	0	0	51	1.00
7371992--7372025	16	2.1	17	94	5	61	67	11	2	17	1.34
7381147--7381173	13	2.1	13	100	0	54	55	0	0	44	0.99
7381093--7381353	35	7.4	35	86	1	324	44	13	6	36	1.70
7385505--7385539	19	1.9	18	88	11	54	34	8	11	45	1.71
7389038--7389070	11	3.0	11	100	0	66	54	36	9	0	1.32
7398218--7398260	19	2.4	17	88	7	59	72	4	0	23	1.04
7398223--7398264	15	2.7	15	78	14	50	69	7	0	23	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7411355--7411447	46	2.0	47	82	2	116	31	4	12	51	1.59
7425744--7425904	43	3.8	43	87	0	207	25	18	33	22	1.96
7425914--7425974	26	2.3	26	94	0	104	24	1	39	34	1.65
7429961--7430062	49	2.1	50	94	5	181	33	7	0	57	1.27
7434287--7434338	20	2.6	20	81	0	59	28	0	9	61	1.27
7438493--7438550	20	2.8	20	78	2	62	31	0	6	62	1.22
7473694--7473807	27	4.4	25	70	12	88	48	5	1	44	1.35
7473709--7473834	21	6.3	21	68	14	63	46	4	2	46	1.37
7473669--7473830	77	2.1	79	96	2	301	47	4	3	45	1.38
7478146--7478414	85	3.2	84	81	3	333	42	13	3	40	1.62
7478294--7478546	132	1.9	132	91	3	411	39	16	2	40	1.63
7478426--7478676	85	3.0	84	88	4	384	42	17	2	37	1.64
7478209--7478636	217	2.0	217	87	3	621	40	16	3	39	1.66
7480061--7480110	23	2.1	24	85	3	66	38	12	2	48	1.52
7489717--7489743	2	13.5	2	100	0	54	0	51	0	48	1.00
7490586--7490623	20	1.9	19	85	15	51	34	10	15	39	1.82
7501265--7501303	15	2.6	15	84	12	53	28	7	10	53	1.62
7501549--7501598	21	2.4	21	82	0	64	22	16	24	38	1.93
7501634--7501676	22	1.9	23	85	4	61	27	11	25	34	1.91
7501579--7501762	95	1.9	94	87	3	271	25	12	24	38	1.90
7501626--7501822	72	2.8	72	83	8	233	25	12	25	36	1.91
7501589--7501932	26	14.5	25	73	15	182	25	11	25	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7501775--7501932	23	6.8	23	81	8	130	24	10	27	37	1.88
7501779--7501932	46	3.3	46	75	15	147	24	10	27	37	1.88
7501946--7502019	22	3.4	22	88	7	107	44	18	10	25	1.82
7501954--7502015	21	2.9	21	92	2	97	41	19	12	25	1.87
7502396--7502479	22	3.9	22	78	6	73	41	21	11	25	1.87
7504390--7504423	16	2.1	16	88	0	50	52	5	2	38	1.41
7504617--7504674	23	2.5	23	86	5	73	51	1	0	46	1.11
7505091--7505137	17	2.9	16	78	12	51	42	6	0	51	1.27
7505089--7505131	17	2.4	18	81	14	54	41	6	0	51	1.29
7505139--7505206	34	2.0	35	85	8	95	51	0	2	45	1.16
7512921--7512959	20	2.0	20	89	0	60	43	17	7	30	1.77
7514141--7514262	64	1.9	64	89	0	190	29	15	25	29	1.96
7514151--7514301	64	2.4	64	82	0	176	29	17	25	27	1.97
7518789--7518961	60	2.9	60	87	2	251	26	34	16	22	1.95
7519274--7519314	19	2.2	18	87	8	64	34	7	24	31	1.83
7519703--7519744	14	2.7	15	85	14	59	2	21	0	76	0.90
7519721--7519938	62	3.4	64	76	13	209	3	36	5	54	1.40
7519765--7519934	68	2.6	65	79	11	188	2	38	5	52	1.38
7519909--7519949	20	2.0	21	90	9	68	0	29	0	70	0.87
7519916--7519961	23	2.0	22	83	8	56	0	23	2	73	0.94
7526349--7526512	60	2.7	60	82	3	197	25	29	18	26	1.98
7527177--7527209	10	3.3	10	88	12	50	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7527313--7527351	12	3.2	12	85	3	51	0	35	0	64	0.94
7527271--7527406	62	2.2	59	84	6	164	2	38	5	53	1.35
7527458--7527506	12	3.9	13	74	15	50	2	24	0	73	0.94
7527466--7527513	24	2.0	23	84	8	60	4	22	0	72	1.01
7527448--7527501	19	2.7	19	80	5	54	1	25	0	72	0.95
7527500--7527563	29	2.2	29	82	0	74	4	37	9	48	1.56
7530948--7531042	47	2.0	47	97	0	181	43	12	5	38	1.65
7533922--7533966	23	2.0	22	86	4	63	40	0	2	57	1.11
7534191--7534239	12	3.8	12	80	19	62	53	4	0	42	1.20
7534191--7534257	28	2.4	28	100	0	134	52	5	0	41	1.26
7534202--7534255	16	3.6	16	80	19	80	48	7	0	44	1.31
7534446--7534476	2	15.5	2	93	0	53	0	45	0	54	0.99
7536134--7536168	2	17.5	2	93	0	52	0	5	48	45	1.26
7538186--7538220	18	1.9	18	94	0	61	42	25	2	28	1.69
7538140--7538550	204	2.0	204	96	0	750	39	12	10	37	1.77
7541185--7541231	22	2.0	24	84	15	64	19	25	6	48	1.72
7544001--7544042	21	1.9	23	85	9	61	30	7	2	59	1.37
7543999--7544049	21	2.3	21	76	6	57	33	5	1	58	1.33
7550717--7550787	28	2.4	30	79	11	76	36	1	1	60	1.14
7550972--7551026	22	2.4	22	80	14	58	58	0	0	41	0.98
7558420--7558464	19	2.4	19	96	0	81	8	17	40	33	1.81
7558588--7558627	15	2.7	15	100	0	80	22	5	17	55	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7560648--7560685	19	2.0	19	100	0	76	26	0	31	42	1.56
7599871--7599908	19	2.0	19	94	0	67	42	28	0	28	1.56
7601792--7601843	16	3.3	15	75	15	50	73	1	3	21	1.10
7601792--7601853	24	2.8	22	75	7	54	75	1	4	17	1.05
7601781--7601858	36	2.3	33	80	12	79	76	2	3	16	1.04
7602042--7602129	34	2.6	34	78	3	106	50	7	35	6	1.58
7602159--7602202	19	2.3	19	84	7	54	70	0	22	6	1.11
7604524--7604564	17	2.4	17	88	8	57	29	12	17	41	1.85
7608757--7608781	13	1.9	13	100	0	50	44	0	8	48	1.32
7609587--7609646	30	2.1	29	81	6	68	30	8	23	38	1.84
7610792--7610816	13	1.9	13	100	0	50	44	0	8	48	1.32
7613185--7613256	28	2.6	28	93	0	117	34	16	16	31	1.92
7614376--7614688	156	2.0	155	85	3	414	30	12	15	41	1.84
7614921--7615177	142	1.8	142	87	1	381	32	21	14	31	1.93
7615485--7615523	19	2.1	19	95	0	69	38	25	5	30	1.78
7624632--7624676	22	2.0	22	86	0	63	42	11	20	26	1.85
7635055--7635135	33	2.5	33	87	0	108	41	24	16	17	1.89
7642250--7642290	2	21.5	2	87	9	59	53	0	0	46	1.00
7642690--7642745	27	2.1	27	90	3	87	46	16	16	21	1.84
7645208--7645232	3	8.3	3	100	0	50	36	0	32	32	1.58
7648971--7649024	24	2.3	24	87	6	76	51	0	1	46	1.11
7649109--7649202	40	2.3	40	85	7	129	41	0	3	55	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7649109--7649226	40	2.9	41	80	9	127	40	0	3	55	1.16
7649234--7649286	27	2.0	26	88	3	79	49	0	3	47	1.19
7649161--7649386	68	3.3	63	71	20	186	39	0	2	57	1.16
7649177--7649451	139	2.0	139	89	2	419	38	0	4	56	1.25
7649178--7649483	139	2.2	140	85	4	397	37	0	4	56	1.26
7649305--7649554	112	2.2	110	79	10	265	36	1	5	56	1.33
7651084--7651125	19	2.2	19	87	8	59	50	4	23	21	1.68
7652322--7652460	36	3.9	36	78	1	111	32	12	23	32	1.91
7662962--7663044	19	4.1	19	83	10	69	72	1	24	2	1.04
7663843--7664016	60	2.9	60	80	5	158	26	18	31	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66