genome.fa.s6.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  38  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13326468--13326592	59	2.2	57	78	7	135	39	14	8	37	1.77
13331992--13332086	36	2.5	39	81	10	126	20	14	36	28	1.92
13337391--13337424	2	17.0	2	93	0	59	50	2	0	47	1.16
13338564--13338824	68	3.9	68	79	6	278	34	18	10	36	1.86
13338570--13338826	135	1.9	136	82	2	320	35	18	10	35	1.86
13339685--13339715	16	1.9	16	93	0	53	67	16	3	12	1.35
13345083--13345127	21	2.2	20	84	11	56	15	20	8	55	1.66
13348445--13348472	11	2.5	11	100	0	56	53	14	0	32	1.41
13350772--13350822	21	2.4	21	84	12	68	15	27	5	50	1.67
13351996--13352065	21	3.3	21	70	7	70	44	1	4	50	1.30
13356505--13356735	35	6.5	35	82	6	252	45	12	5	36	1.67
13356689--13356728	19	2.2	17	86	8	53	50	10	2	37	1.50
13358741--13358774	2	17.0	2	93	0	59	47	0	2	50	1.16
13358815--13358940	42	3.0	42	82	0	162	22	34	20	23	1.97
13358962--13358992	2	15.5	2	93	0	53	45	3	0	51	1.17
13366768--13366897	43	3.0	43	88	2	199	25	17	33	23	1.96
13368381--13368451	35	2.0	35	83	0	88	28	25	15	30	1.96
13369382--13369426	17	2.6	18	86	10	67	8	22	24	44	1.81
13370807--13370839	16	2.1	16	88	5	50	45	3	0	51	1.16
13373033--13373070	19	2.0	19	94	0	67	44	31	0	23	1.54
13375789--13376195	205	2.0	202	87	2	591	26	13	28	31	1.93
13383438--13383522	37	2.3	37	87	2	118	30	23	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13383631--13383689	10	5.6	11	75	20	56	54	20	0	25	1.45
13383629--13383689	31	2.0	31	96	0	113	55	19	0	24	1.43
13384819--13384881	29	2.1	29	88	8	92	50	4	14	30	1.63
13400942--13401072	42	3.1	42	85	0	163	28	21	30	19	1.98
13409675--13409718	18	2.5	18	77	3	54	63	4	0	31	1.14
13410105--13410280	67	2.6	67	84	3	230	37	25	11	25	1.89
13410101--13410277	35	5.2	33	72	16	123	37	25	11	25	1.89
13411872--13411964	20	5.0	20	65	21	67	45	0	2	51	1.13
13411869--13411973	53	2.0	51	96	3	192	45	0	1	51	1.12
13412429--13412457	10	2.7	11	89	10	51	31	0	0	68	0.89
13412424--13412472	17	3.0	17	82	8	66	30	4	0	65	1.11
13412397--13412472	32	2.2	35	81	13	86	34	3	0	61	1.14
13414935--13415029	35	2.7	36	85	3	138	47	15	4	32	1.65
13428371--13428404	18	1.9	18	88	5	52	29	14	17	38	1.90
13429949--13429998	24	2.1	24	96	0	91	28	12	22	38	1.89
13431873--13431942	35	2.0	34	86	2	95	27	11	28	32	1.91
13436056--13436101	20	2.3	20	96	0	83	45	21	4	28	1.71
13454673--13454745	8	8.8	8	78	14	58	16	4	0	79	0.88
13459249--13459329	41	2.0	41	87	0	117	32	7	16	44	1.75
13460350--13460451	32	3.1	33	72	9	100	37	25	13	23	1.92
13469043--13469192	60	2.5	61	85	2	194	32	19	22	26	1.97
13471360--13471408	21	2.3	22	80	16	59	26	0	10	63	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13478208--13478235	11	2.5	11	100	0	56	32	0	14	53	1.41
13478513--13478551	15	2.6	15	87	0	60	33	17	7	41	1.79
13494884--13494953	33	2.1	33	94	0	122	32	15	25	25	1.95
13496336--13496401	2	32.0	2	84	6	87	45	4	1	46	1.32
13505945--13505978	15	2.2	16	89	5	52	26	0	2	70	1.01
13510091--13510140	26	1.9	26	87	0	73	24	24	16	36	1.94
13525500--13525559	30	2.1	30	84	9	81	70	5	25	0	1.08
13531267--13531313	17	2.7	18	80	6	60	36	6	0	57	1.24
13531289--13531570	115	2.4	114	78	7	282	39	9	3	47	1.54
13532727--13532765	17	2.3	17	82	13	53	61	2	5	30	1.31
13535266--13535299	16	2.1	16	94	0	59	20	0	0	79	0.73
13542287--13542311	13	1.9	13	100	0	50	52	0	0	48	1.00
13545807--13545849	6	7.0	6	84	12	52	18	2	0	79	0.85
13545811--13545849	16	2.3	18	86	8	55	17	2	0	79	0.84
13545806--13545840	13	2.7	13	86	13	54	22	0	0	77	0.78
13546055--13546185	70	1.9	69	88	1	199	31	35	9	24	1.87
13549870--13549894	11	2.3	11	100	0	50	36	0	0	64	0.94
13558318--13558367	5	10.0	5	93	0	82	38	22	0	40	1.54
13558418--13558484	22	3.0	22	76	4	62	43	20	4	31	1.72
13561266--13561422	28	5.5	28	80	9	165	36	17	20	26	1.94
13561277--13561346	34	2.1	34	88	0	104	34	22	14	28	1.93
13561311--13561422	27	4.1	27	89	1	143	35	17	20	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13561876--13561911	3	12.0	3	100	0	72	33	0	0	66	0.92
13570145--13570186	22	1.9	22	85	0	57	26	11	16	45	1.82
13570169--13570228	21	2.9	21	87	5	86	23	18	23	35	1.96
13570216--13570346	23	5.4	25	86	6	141	24	12	28	35	1.91
13570238--13570372	23	5.8	23	79	10	123	25	11	27	35	1.90
13570216--13570371	46	3.3	45	80	10	136	25	11	26	35	1.90
13570383--13570453	22	3.3	22	84	4	90	45	26	11	16	1.82
13570385--13570452	21	3.2	21	85	2	82	44	27	11	16	1.82
13576318--13576436	59	2.0	59	96	3	222	47	19	8	25	1.77
13580127--13580209	41	2.0	42	88	2	123	28	7	24	39	1.82
13582077--13582132	14	4.1	14	74	4	51	57	3	0	39	1.16
13586377--13586450	33	2.2	33	90	7	114	0	29	5	64	1.15
13588826--13588852	2	13.5	2	100	0	54	0	48	0	51	1.00
13599862--13599945	31	2.7	31	83	5	100	46	4	17	30	1.69
13602230--13602289	25	2.4	25	80	0	75	21	16	36	25	1.94
13607238--13607767	151	3.5	151	82	1	603	31	15	19	33	1.93
13608889--13608915	11	2.5	11	100	0	54	22	11	33	33	1.89
13616843--13616915	26	2.8	26	81	8	76	36	17	15	30	1.91
13617532--13617579	21	2.3	21	96	0	87	29	16	35	18	1.93
13620206--13620369	77	2.1	77	85	0	211	25	26	17	30	1.97
13620224--13620813	77	7.8	75	74	11	422	26	21	20	31	1.98
13620301--13620813	72	6.8	79	73	11	308	26	20	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13620230--13620856	151	4.2	151	80	2	676	26	21	20	31	1.98
13620227--13620849	301	2.1	298	83	3	777	26	21	20	31	1.98
13620836--13620884	24	2.0	24	92	0	80	12	12	28	46	1.77
13622550--13622652	52	2.0	52	90	0	161	26	13	28	32	1.94
13622908--13623041	73	1.9	72	87	3	198	20	24	26	28	1.99
13625319--13625700	151	2.5	151	82	1	462	30	15	19	35	1.93
13628324--13628381	23	2.5	23	83	5	64	27	27	15	29	1.96
13628480--13628533	22	2.4	24	81	12	69	27	31	5	35	1.80
13628478--13628753	23	12.3	23	78	6	199	25	32	10	30	1.90
13628478--13629048	46	11.9	46	67	14	210	26	32	11	29	1.91
13628704--13628908	81	2.5	81	82	7	229	28	31	10	30	1.90
13628864--13629048	23	7.9	23	74	8	140	25	34	11	28	1.90
13629117--13629275	81	2.0	81	88	2	239	29	33	11	24	1.91
13631397--13631459	20	3.2	20	90	2	101	30	41	3	25	1.71
13631458--13631576	43	2.8	43	89	2	168	19	37	21	21	1.94
13639511--13639616	38	2.7	40	85	2	135	24	40	14	20	1.90
13643277--13643317	2	20.5	2	100	0	82	51	0	0	48	1.00
13650080--13650125	22	2.1	23	84	11	62	60	8	2	28	1.38
13660944--13660982	18	2.2	18	86	9	53	56	0	0	43	0.99
13664662--13664707	20	2.3	20	88	7	67	32	4	17	45	1.68
13664752--13664804	28	1.9	27	88	3	79	30	18	22	28	1.98
13664752--13664810	28	2.1	28	84	6	75	30	20	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13672042--13672087	2	23.5	2	95	4	85	50	0	0	50	1.00
13672422--13672446	13	1.9	13	100	0	50	8	8	20	64	1.46
13690356--13690392	18	2.0	20	89	10	60	72	0	27	0	0.84
13690836--13690924	42	2.1	42	93	0	151	21	21	32	24	1.98
13690853--13690950	42	2.3	42	85	0	124	25	20	31	22	1.98
13694068--13694119	21	2.4	22	87	9	79	42	19	23	15	1.89
13696745--13696818	21	3.6	21	74	7	80	59	8	4	28	1.44
13714107--13714166	25	2.4	25	88	0	84	26	33	15	25	1.95
13718113--13718167	7	7.9	7	76	8	58	0	34	0	65	0.93
13727773--13728021	33	7.1	33	77	13	223	30	36	12	20	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66