genome.fa.s6.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  8  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2678367--2678425	21	2.6	24	75	21	65	45	1	0	52	1.10
2678303--2678487	81	2.2	81	80	4	192	40	8	3	47	1.51
2680306--2680331	3	8.7	3	100	0	52	0	0	65	34	0.93
2680709--2680775	29	2.4	27	85	9	82	62	1	0	35	1.04
2680759--2680817	11	5.5	11	74	9	59	52	1	0	45	1.10
2682508--2682533	2	13.0	2	100	0	52	50	0	0	50	1.00
2691058--2691082	13	1.9	13	100	0	50	48	0	0	52	1.00
2692511--2692548	2	19.0	2	100	0	76	50	0	0	50	1.00
2695005--2695272	136	2.0	136	85	0	365	37	13	13	35	1.84
2697643--2697680	19	2.0	19	94	0	67	42	28	0	28	1.56
2701380--2701525	37	3.9	37	86	5	197	31	11	32	23	1.91
2706566--2706591	2	13.0	2	100	0	52	0	50	0	50	1.00
2712785--2713009	76	3.0	75	82	8	269	40	15	32	11	1.83
2713166--2713209	22	2.0	21	82	8	52	50	20	11	18	1.77
2715513--2715640	45	2.8	45	83	4	170	33	17	20	28	1.95
2715611--2715660	24	2.1	24	92	0	82	42	22	18	18	1.90
2715635--2715731	45	2.2	45	88	0	140	31	21	20	25	1.98
2715512--2715731	114	1.9	114	84	1	289	33	18	20	27	1.96
2715746--2715820	26	3.0	24	76	18	73	38	16	17	28	1.91
2715818--2715894	29	2.7	28	82	6	84	38	12	10	37	1.78
2719533--2719685	49	3.0	49	78	14	202	29	23	14	32	1.94
2719520--2719679	53	3.1	53	78	14	208	30	23	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2722068--2722113	4	11.5	4	90	0	56	41	2	6	50	1.40
2722068--2722113	6	7.7	6	85	0	56	41	2	6	50	1.40
2727578--2727679	42	2.4	42	81	14	104	52	2	2	41	1.31
2730064--2730106	21	2.0	21	86	0	59	53	0	0	46	1.00
2732552--2732601	25	1.9	25	84	8	64	40	2	4	54	1.31
2735442--2735482	18	2.3	18	91	0	64	43	12	7	36	1.70
2735539--2735573	16	2.2	16	94	0	61	74	0	0	25	0.82
2737033--2737058	2	13.0	2	100	0	52	50	0	0	50	1.00
2737931--2737960	3	10.0	3	100	0	60	66	0	0	33	0.92
2743723--2743763	21	2.0	21	85	9	57	39	7	14	39	1.74
2750234--2750424	95	2.0	95	97	0	364	43	11	19	25	1.84
2754851--2754897	17	2.8	17	77	6	51	38	4	4	53	1.40
2754484--2754888	216	1.9	213	82	7	483	40	5	5	47	1.52
2764528--2764556	5	5.8	5	100	0	58	62	20	0	17	1.33
2764528--2764562	15	2.3	15	90	0	52	57	25	0	17	1.40
2774978--2775024	15	3.1	15	84	0	58	23	34	4	38	1.74
2774981--2775019	9	4.3	9	83	0	51	23	33	5	38	1.77
2775775--2775801	2	13.5	2	100	0	54	48	0	0	51	1.00
2784625--2784701	34	2.3	34	95	0	136	35	0	27	37	1.57
2788520--2788570	25	2.0	25	92	7	86	19	15	7	54	1.64
2804990--2805020	2	15.5	2	100	0	62	51	0	0	48	1.00
2805618--2805658	15	2.7	15	84	0	55	48	0	12	39	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2808551--2808620	24	2.9	24	75	10	61	10	10	2	77	1.10
2818308--2818332	2	12.5	2	100	0	50	52	0	0	48	1.00
2821070--2821192	61	2.0	61	91	0	201	38	17	28	16	1.91
2828128--2828329	100	2.0	100	99	0	395	43	10	14	31	1.79
2836162--2836220	27	2.2	27	85	8	77	62	0	0	37	0.95
2836928--2836973	22	2.1	22	88	8	67	45	4	0	50	1.21
2841262--2841301	20	2.0	20	85	9	55	67	0	2	30	1.04
2841934--2842040	22	4.8	22	69	18	60	44	1	0	52	1.18
2842008--2842055	13	3.5	13	80	5	51	43	2	0	54	1.12
2841931--2842058	23	5.4	24	68	24	60	46	1	0	51	1.16
2842274--2842331	25	2.4	23	80	11	62	41	0	3	55	1.17
2845910--2845975	25	2.7	26	75	11	68	39	1	6	53	1.35
2845923--2845991	26	2.7	26	78	12	65	42	4	5	47	1.47
2849705--2849755	25	2.0	25	85	7	68	39	3	3	52	1.38
2855097--2855125	12	2.3	13	94	5	51	31	0	6	62	1.22
2856489--2856564	10	7.4	10	69	20	50	46	1	0	52	1.08
2856513--2856578	16	4.4	14	78	18	62	50	1	1	46	1.20
2856507--2856601	45	2.1	45	88	3	138	49	1	3	46	1.24
2857774--2857802	5	5.8	5	100	0	58	37	20	0	41	1.53
2878470--2878496	3	9.0	3	100	0	54	66	0	0	33	0.92
2880271--2880310	16	2.5	15	88	12	53	27	0	0	72	0.85
2885000--2885120	63	1.9	63	86	3	172	49	4	6	39	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2885065--2885328	132	2.0	131	99	0	519	44	7	11	36	1.69
2885471--2885592	45	2.7	45	88	2	172	34	4	42	18	1.70
2886673--2886712	19	2.2	19	86	4	55	37	15	2	45	1.59
2886673--2886722	19	2.5	20	78	18	52	38	16	2	44	1.59
2886776--2886808	14	2.3	15	94	5	59	48	0	0	51	1.00
2888802--2888846	22	2.1	21	87	4	63	60	0	4	35	1.17
2888882--2888914	17	2.0	17	88	5	50	51	3	12	33	1.54
2889235--2889364	48	2.6	50	78	13	133	55	3	4	36	1.39
2893954--2894027	31	2.5	31	82	6	91	45	0	0	54	1.00
2894240--2894281	18	2.4	17	80	7	57	69	0	2	28	1.01
2899442--2899485	21	2.1	21	87	8	63	86	11	2	0	0.66
2899442--2899485	19	2.3	19	84	11	54	86	11	2	0	0.66
2899443--2899476	18	1.9	18	94	5	61	88	8	2	0	0.62
2900812--2900838	12	2.2	12	100	0	54	0	11	33	55	1.35
2903378--2903427	23	2.1	24	92	3	84	48	14	22	16	1.81
2909960--2911003	547	2.0	528	85	5	1415	36	9	7	46	1.66
2927147--2927172	7	3.7	7	100	0	52	69	0	0	30	0.89
2927166--2927220	21	2.5	23	79	11	69	60	1	1	36	1.18
2930770--2930815	23	2.0	24	95	4	85	45	8	26	19	1.79
2932411--2932451	15	2.7	16	82	17	52	2	17	51	29	1.58
2934613--2934641	14	2.0	15	93	6	51	34	27	20	17	1.95
2937664--2937924	138	1.9	138	84	3	355	22	26	27	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2944606--2944662	30	1.9	30	92	0	96	28	15	26	29	1.96
2946507--2946897	111	3.5	109	81	6	408	16	10	27	45	1.80
2946679--2946985	118	2.6	117	82	2	346	17	12	27	42	1.86
2953754--2953803	26	1.9	26	87	0	73	56	6	14	24	1.60
2955380--2955493	24	4.9	24	74	14	103	23	26	16	33	1.96
2958034--2958071	20	2.0	20	89	5	60	31	42	10	15	1.81
2971398--2971512	57	2.0	57	96	0	212	37	6	33	22	1.81
2975489--2975631	73	1.9	74	91	1	234	24	20	13	41	1.89
2983243--2983278	18	2.0	18	94	0	63	25	19	22	33	1.97
2986314--2986548	74	3.2	73	87	4	303	41	14	22	22	1.89
2990395--2990520	45	2.8	45	77	10	125	25	11	25	38	1.89
2990574--2990655	23	3.6	23	80	1	94	18	12	29	40	1.87
2990470--2990656	22	8.4	22	72	4	88	21	11	28	39	1.88
2992065--2992147	16	5.1	16	70	27	50	65	6	1	27	1.24
2992057--2992130	25	3.0	25	74	16	73	66	5	0	28	1.14
2992064--2992147	35	2.6	32	72	17	82	65	5	1	27	1.23
2992070--2992129	14	4.1	14	76	14	50	66	6	0	26	1.16
2999185--2999241	23	2.6	23	83	5	64	42	22	12	22	1.87
2999420--2999498	38	2.1	38	82	0	95	37	22	13	25	1.91
2999466--2999591	22	5.8	22	74	5	94	46	22	10	21	1.81
2999480--2999577	43	2.2	44	85	1	135	46	20	10	22	1.80
3003602--3003669	2	34.0	2	88	11	104	50	1	0	47	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3006708--3006808	30	3.4	30	87	4	150	32	15	14	36	1.89
3006810--3007020	69	3.1	68	84	6	273	24	18	19	37	1.93
3006953--3007059	45	2.4	44	85	4	144	28	20	16	33	1.95
3006991--3007200	69	3.1	69	86	3	280	27	19	18	34	1.95
3006881--3007137	113	2.3	114	85	6	344	26	18	18	36	1.94
3007051--3007097	24	2.0	24	83	8	60	25	14	14	44	1.84
3006813--3007313	182	2.7	183	88	2	695	27	18	17	36	1.93
3007104--3007161	24	2.4	24	82	5	73	24	17	20	37	1.93
3007173--3007313	69	2.0	69	81	0	165	29	16	17	36	1.91
3007222--3007271	24	2.1	24	92	0	82	20	18	22	40	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66