genome.fa.s6.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  28  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9493177--9493419	67	3.6	67	84	6	271	27	13	23	35	1.92
9503548--9503590	15	2.7	16	82	10	52	44	9	2	44	1.49
9518710--9518872	73	2.2	73	76	6	170	22	20	18	38	1.94
9521441--9521558	42	2.8	43	85	5	161	22	20	32	25	1.98
9526785--9526904	44	2.7	43	79	2	132	49	5	13	32	1.63
9533295--9533443	28	5.1	27	76	13	145	42	10	9	37	1.72
9533289--9533464	30	5.9	29	79	8	176	42	10	10	36	1.73
9533295--9533464	90	1.9	90	91	0	277	42	10	10	37	1.73
9533693--9533725	17	1.9	17	88	11	50	42	3	15	39	1.62
9546221--9546280	30	2.1	29	81	6	68	31	8	21	38	1.83
9548944--9548994	27	1.9	26	88	4	75	33	19	19	27	1.96
9555695--9555739	19	2.3	20	92	3	74	44	22	6	26	1.77
9573696--9573801	35	3.0	35	91	0	167	31	8	33	26	1.86
9575827--9575867	2	20.0	2	85	5	55	48	2	2	46	1.28
9575945--9575987	2	21.0	2	85	4	59	48	2	2	46	1.27
9575807--9576042	120	2.0	116	97	2	436	32	8	17	41	1.79
9580482--9580519	19	2.0	19	94	0	67	28	0	28	42	1.56
9592154--9592450	151	2.0	151	91	2	481	21	33	24	20	1.97
9609037--9609077	13	3.2	13	83	13	50	68	0	2	29	1.03
9609485--9609602	58	2.0	58	91	0	191	38	16	11	33	1.84
9625048--9625133	36	2.4	36	90	0	127	23	37	18	20	1.94
9629957--9629984	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9636165--9636198	2	17.0	2	93	0	59	50	2	0	47	1.16
9638592--9638620	14	2.0	15	93	6	51	20	20	10	48	1.79
9641771--9641826	16	3.8	16	75	24	68	75	10	14	0	1.06
9641771--9641833	27	2.3	27	97	2	117	73	9	17	0	1.09
9642274--9642319	24	1.9	25	83	16	62	28	13	26	32	1.93
9642416--9642462	22	2.1	22	96	0	85	36	12	42	8	1.74
9642510--9642547	16	2.4	17	82	13	53	78	0	18	2	0.86
9650891--9650922	16	1.9	17	93	6	57	0	37	0	62	0.95
9654029--9654069	21	1.9	22	85	5	57	29	21	21	26	1.99
9654262--9654344	23	3.6	23	91	0	121	36	40	1	21	1.61
9654341--9654463	43	2.9	43	85	2	158	19	38	17	24	1.93
9670493--9670532	20	2.0	20	85	5	53	20	2	5	72	1.15
9671619--9671645	14	1.9	14	100	0	54	29	0	11	59	1.32
9680429--9680453	13	1.9	13	100	0	50	44	0	8	48	1.32
9684134--9684160	14	1.9	14	100	0	54	29	0	11	59	1.32
9688233--9688278	2	23.0	2	100	0	92	50	0	0	50	1.00
9688970--9689013	12	3.8	12	84	3	54	2	34	0	63	1.07
9689449--9689489	16	2.6	16	85	14	50	70	2	7	19	1.22
9692713--9692752	21	1.9	21	100	0	80	30	27	12	30	1.93
9700837--9700947	42	2.6	43	87	7	147	26	13	36	23	1.92
9700837--9700994	43	3.7	43	81	7	171	25	16	36	22	1.94
9708678--9708915	43	5.6	43	87	2	311	25	18	36	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9714217--9714319	38	2.6	40	86	3	138	19	16	40	23	1.91
9716178--9716206	2	14.5	2	100	0	58	48	0	0	51	1.00
9716717--9716742	2	13.0	2	100	0	52	50	0	0	50	1.00
9729955--9729992	20	1.9	20	100	0	76	44	21	5	28	1.73
9730851--9730905	8	7.2	8	82	14	64	0	32	1	65	1.03
9730859--9730916	8	7.7	7	81	14	55	1	32	0	65	1.03
9730851--9730917	16	4.3	15	80	14	66	1	34	1	62	1.13
9734082--9734124	15	2.9	15	89	3	61	25	4	18	51	1.66
9734087--9734126	15	2.7	15	92	0	62	27	5	15	52	1.63
9741731--9741777	17	2.6	18	80	10	60	57	0	8	34	1.29
9744376--9744421	14	3.4	14	80	17	60	19	2	0	78	0.86
9744350--9744416	33	2.1	32	82	2	80	17	2	1	77	0.97
9744349--9744416	14	5.2	13	70	19	52	17	2	1	77	0.96
9746387--9746429	21	2.0	21	81	0	50	37	16	16	30	1.91
9746853--9746921	35	2.0	35	82	5	86	34	23	11	30	1.90
9748525--9748572	21	2.3	21	81	0	60	56	2	0	41	1.11
9748535--9748579	21	2.1	21	91	4	72	51	0	2	46	1.13
9750011--9750151	42	3.4	42	81	3	167	20	31	21	26	1.98
9754455--9755210	379	2.0	378	95	0	1359	30	9	15	44	1.78
9755211--9755289	40	2.0	40	89	0	122	16	24	24	35	1.95
9757497--9757547	24	2.1	24	82	7	59	21	3	9	64	1.40
9757933--9758011	40	2.0	40	89	0	122	18	20	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9760052--9760103	15	3.2	17	81	15	65	38	3	9	48	1.54
9760869--9760937	29	2.4	28	82	2	84	18	24	10	46	1.80
9764499--9764572	36	2.1	36	86	0	103	21	33	18	25	1.96
9767340--9767420	29	2.8	29	74	10	85	43	8	28	19	1.81
9767856--9767893	12	3.2	12	81	3	51	15	13	5	65	1.43
9769948--9769995	24	2.1	23	82	17	57	62	4	31	2	1.26
9780798--9780900	38	2.6	39	77	11	104	21	16	38	23	1.92
9780798--9780903	40	2.7	38	81	5	115	21	16	38	23	1.92
9793594--9793730	52	2.6	52	91	0	202	25	17	27	29	1.97
9793705--9793817	35	3.1	36	81	8	115	23	14	32	30	1.94
9799112--9799168	28	2.0	29	83	10	73	36	5	1	56	1.32
9799539--9799567	10	3.0	10	95	5	51	48	0	0	51	1.00
9802113--9802175	26	2.5	26	82	7	67	26	7	19	46	1.77
9821612--9821662	24	2.1	24	100	0	102	19	11	21	47	1.81
9835765--9835804	20	2.1	19	85	4	53	7	22	7	62	1.47
9842377--9842552	27	6.5	27	80	8	146	28	17	13	40	1.88
9842361--9842559	81	2.5	82	75	9	203	27	16	15	41	1.88
9844775--9844812	20	1.9	20	100	0	76	28	5	21	44	1.73
9852461--9852485	13	1.9	13	100	0	50	48	0	0	52	1.00
9856341--9856374	15	2.2	16	89	5	52	35	11	8	44	1.72
9857635--9857781	55	2.7	55	92	2	233	26	34	15	23	1.94
9858914--9858957	18	2.4	18	81	11	54	70	2	0	27	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9866769--9866830	31	2.0	31	100	0	124	41	19	22	16	1.89
9867742--9867805	17	3.2	21	71	26	66	18	7	1	71	1.18
9867743--9867807	11	5.9	11	79	12	62	18	7	1	72	1.17
9873677--9873792	34	3.4	34	72	7	117	25	12	30	31	1.93
9873673--9873842	69	2.4	70	85	2	227	26	12	30	30	1.93
9873673--9873833	35	4.6	34	71	10	121	26	13	29	31	1.93
9874182--9874248	25	2.7	25	85	0	98	44	14	22	17	1.86
9875519--9875578	23	2.6	23	89	0	84	26	1	38	33	1.67
9880930--9880957	2	14.0	2	100	0	56	50	0	0	50	1.00
9883346--9883501	69	2.2	70	82	3	181	29	14	24	32	1.94
9883350--9883535	70	2.7	69	81	5	194	28	13	27	30	1.95
9883498--9883571	35	2.1	34	85	2	94	20	10	33	35	1.87
9888671--9888806	67	2.0	67	85	5	186	25	12	26	35	1.92
9897370--9897443	10	7.2	10	76	13	71	2	14	0	82	0.78
9897349--9897442	19	4.8	19	80	10	84	2	19	0	78	0.85
9897364--9897425	18	3.8	16	78	20	65	1	16	0	82	0.75
9897370--9897443	32	2.4	29	84	8	94	2	14	0	82	0.78
9899582--9899727	55	2.7	55	87	0	211	22	15	35	26	1.94
9900586--9900625	15	2.7	15	88	0	62	32	30	7	30	1.85
9907078--9907198	34	3.4	34	68	22	95	21	14	36	28	1.92
9907069--9907240	73	2.4	73	85	0	254	23	15	33	27	1.95
9907197--9907311	36	3.2	36	80	10	112	22	17	32	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9912676--9912702	2	13.5	2	100	0	54	51	0	0	48	1.00
9913094--9913152	25	2.2	28	73	20	70	30	16	27	25	1.97
9913100--9913159	25	2.4	25	91	0	93	28	20	30	21	1.98
9923128--9923171	11	4.3	11	77	16	58	68	9	22	0	1.18
9923154--9923197	19	2.3	19	80	4	52	70	4	25	0	1.06
9923128--9923186	30	2.0	29	96	3	109	67	8	23	0	1.17
9923391--9923432	22	1.9	22	85	0	57	16	16	23	42	1.88
9923278--9923465	93	2.0	93	83	2	234	21	12	29	36	1.90
9923380--9923524	57	2.6	57	77	7	152	21	13	30	35	1.91
9923281--9923613	149	2.2	150	87	2	456	22	12	30	35	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66