genome.fa.s6.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  45  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16192582--16192615	15	2.3	15	89	0	50	70	5	23	0	1.09
16197882--16197931	23	2.2	23	85	7	66	36	24	4	36	1.74
16210042--16210079	20	1.9	19	85	15	51	57	13	2	26	1.49
16210115--16210156	21	2.0	22	85	4	59	47	19	7	26	1.74
16217618--16217643	13	2.0	13	100	0	52	46	0	7	46	1.31
16221855--16221892	15	2.5	15	91	0	58	28	2	15	52	1.56
16221938--16221967	5	6.0	5	96	0	51	36	0	23	40	1.55
16229920--16229963	21	2.1	21	86	0	61	36	2	20	40	1.65
16241473--16241590	42	2.8	42	87	5	150	27	20	32	20	1.97
16241617--16241651	2	17.5	2	100	0	70	51	0	0	48	1.00
16242667--16242692	2	13.0	2	100	0	52	50	0	0	50	1.00
16248235--16248281	18	2.6	18	76	6	51	70	4	23	2	1.16
16252552--16252576	13	1.9	13	100	0	50	52	0	0	48	1.00
16260428--16260466	21	1.9	19	85	10	51	53	2	38	5	1.37
16260461--16260504	22	2.0	22	90	0	70	47	2	31	18	1.61
16314352--16314667	35	9.3	33	82	5	310	29	18	43	8	1.80
16314356--16314667	136	2.3	136	88	2	457	29	19	43	8	1.80
16314637--16314795	25	6.4	25	77	7	162	33	19	40	5	1.75
16314631--16314782	50	3.0	50	92	0	259	32	21	40	5	1.76
16315193--16315244	22	2.4	22	100	0	104	30	5	50	13	1.65
16316954--16317011	29	2.0	29	93	0	98	46	13	22	17	1.83
16316955--16317018	29	2.2	29	88	0	92	46	12	25	15	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16317167--16317200	18	1.9	17	88	5	50	32	11	20	35	1.89
16317710--16317824	36	3.2	35	72	16	92	31	20	14	33	1.93
16317711--16317846	72	1.9	72	83	3	175	32	20	14	32	1.93
16318987--16319016	11	2.9	10	90	9	51	46	10	10	33	1.71
16319272--16319308	2	18.5	2	94	0	65	48	0	0	51	1.00
16322976--16323053	34	2.3	34	86	0	102	23	15	30	30	1.95
16322990--16323083	35	2.7	35	88	1	127	21	14	29	34	1.93
16323175--16323261	34	2.5	35	81	12	117	36	16	22	24	1.94
16323389--16323433	10	4.7	10	89	5	67	75	0	24	0	0.80
16323389--16323434	5	9.6	5	88	2	60	76	0	23	0	0.79
16323389--16323434	20	2.4	19	92	7	76	76	0	23	0	0.79
16323466--16323526	25	2.5	24	87	12	88	50	9	22	16	1.74
16326366--16326403	20	1.9	20	94	0	67	44	18	5	31	1.72
16332313--16332351	11	3.5	11	93	6	62	33	0	15	51	1.44
16332381--16332415	5	7.0	5	90	0	52	40	0	22	37	1.55
16334011--16334041	16	1.9	16	93	0	53	64	0	3	32	1.09
16334457--16334524	17	4.3	15	75	22	50	70	1	2	25	1.09
16334649--16334728	7	11.9	7	73	13	53	68	2	3	25	1.18
16334753--16334796	21	2.0	22	87	12	65	75	2	2	20	1.03
16346971--16347280	37	8.3	36	84	3	325	22	16	20	41	1.90
16346971--16347280	73	4.2	76	84	4	366	22	16	20	41	1.90
16346972--16347280	110	2.8	111	87	3	426	22	15	20	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16347932--16347985	28	1.9	28	96	0	99	38	14	40	5	1.70
16348624--16348654	16	1.9	16	93	0	53	64	0	3	32	1.09
16349165--16349223	22	2.8	21	80	10	66	76	1	1	20	0.96
16349172--16349224	28	1.9	27	84	3	70	77	1	1	18	0.96
16349335--16349407	22	3.0	25	73	20	64	69	2	5	21	1.21
16355281--16355326	24	2.0	23	86	4	65	2	21	2	73	1.04
16355286--16355336	24	2.1	24	82	7	59	3	21	1	72	1.11
16355609--16355686	34	2.3	34	91	2	131	20	12	29	37	1.90
16355609--16355695	33	2.6	34	88	1	131	24	12	28	34	1.92
16355804--16355871	34	2.0	34	83	8	86	39	16	20	23	1.91
16362910--16362987	37	2.1	36	79	4	84	30	23	12	33	1.92
16365516--16365557	21	2.0	21	85	0	57	76	7	9	7	1.17
16365651--16365694	22	2.1	20	87	8	61	27	25	11	36	1.90
16370218--16370299	43	1.9	43	92	0	137	25	19	30	24	1.98
16370219--16370323	43	2.4	43	84	3	131	24	19	33	22	1.97
16370336--16370386	23	2.2	23	96	0	93	23	5	43	27	1.77
16375617--16375776	43	3.8	42	83	5	189	26	15	35	23	1.94
16375598--16375806	85	2.5	85	83	7	248	27	14	33	24	1.95
16375617--16375806	43	4.5	41	80	9	179	27	14	34	23	1.94
16382889--16383023	43	3.2	43	91	1	209	28	19	31	20	1.97
16382904--16383053	43	3.6	41	85	5	144	30	16	32	20	1.95
16382889--16383053	85	2.0	84	83	7	210	30	17	31	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16386619--16386662	22	2.1	20	87	8	61	27	25	11	36	1.90
16398906--16398935	2	15.0	2	100	0	60	50	0	0	50	1.00
16407679--16407722	2	23.5	2	82	13	58	47	0	0	52	1.00
16410854--16410880	2	13.5	2	100	0	54	51	48	0	0	1.00
16415312--16415417	38	2.7	39	81	5	126	23	40	14	21	1.90
16415554--16415581	2	14.0	2	100	0	56	50	0	0	50	1.00
16418707--16418736	8	3.8	8	90	0	51	20	40	3	36	1.69
16418706--16418736	16	1.9	16	100	0	62	19	38	6	35	1.77
16418814--16418890	32	2.4	33	82	8	95	22	6	0	71	1.08
16421099--16421203	38	2.7	40	85	4	133	22	37	15	24	1.93
16433014--16433059	20	2.3	20	96	0	83	28	4	21	45	1.71
16433104--16433156	28	1.9	27	88	3	79	30	18	22	28	1.98
16433104--16433162	28	2.1	28	84	6	75	30	20	23	25	1.98
16440875--16441020	49	3.0	48	81	6	141	35	22	9	32	1.87
16443055--16443091	2	18.5	2	100	0	74	48	0	0	51	1.00
16445489--16445535	3	15.7	3	90	0	76	65	2	2	29	1.15
16448517--16448562	19	2.4	20	82	10	60	54	0	2	43	1.12
16453043--16453067	12	2.1	12	100	0	50	64	0	0	36	0.94
16453527--16453593	27	2.5	27	95	0	116	46	10	19	23	1.81
16459043--16459128	27	3.2	27	98	0	163	43	10	24	22	1.84
16473027--16473085	31	1.9	31	82	6	75	28	13	1	55	1.48
16475593--16475686	45	2.1	45	85	0	125	43	3	6	46	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16475701--16475779	22	3.6	21	73	8	68	44	0	3	51	1.19
16475701--16475791	44	2.1	44	85	4	121	46	0	4	49	1.22
16475724--16475791	22	3.1	22	75	8	75	48	0	5	45	1.26
16476716--16476761	20	2.3	20	96	0	83	28	4	21	45	1.71
16476806--16476858	28	1.9	27	88	3	79	30	18	22	28	1.98
16476806--16476864	28	2.1	28	84	6	75	30	20	23	25	1.98
16484755--16484800	20	2.3	20	92	0	74	30	4	19	45	1.70
16484845--16484897	28	1.9	27	88	3	79	30	18	22	28	1.98
16484845--16484903	28	2.1	28	84	6	75	30	20	23	25	1.98
16490596--16490656	32	1.9	32	82	0	77	32	13	19	34	1.90
16491493--16491568	35	2.1	36	85	7	102	64	9	0	26	1.23
16492392--16492438	20	2.3	21	82	10	62	31	8	14	44	1.76
16501317--16501360	21	2.1	21	95	0	79	38	22	6	31	1.81
16508623--16508669	20	2.3	21	89	10	80	42	19	8	29	1.80
16513349--16513375	14	1.9	14	100	0	54	66	7	0	25	1.17
16525722--16525781	28	2.1	29	87	6	86	38	21	8	31	1.83
16527970--16528087	2	60.0	2	87	6	80	45	8	3	41	1.51
16527963--16528090	66	2.0	65	100	0	247	43	7	5	42	1.56
16530095--16530134	20	2.0	21	90	5	64	20	2	7	70	1.24
16530883--16530910	13	2.2	13	100	0	56	64	7	7	21	1.43
16536352--16536389	13	2.9	13	100	0	76	47	7	0	44	1.32
16539268--16539353	26	3.5	26	69	18	83	24	13	24	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16539222--16539376	48	3.2	48	90	0	229	23	13	23	38	1.91
16539294--16539375	22	3.5	22	76	12	83	21	15	26	35	1.94
16544171--16544463	76	3.8	78	82	2	376	39	15	26	18	1.90
16548479--16548656	23	7.7	23	77	4	153	34	26	13	25	1.93
16548610--16548670	23	2.6	23	78	2	68	45	22	6	24	1.76
16548736--16548843	46	2.3	46	84	3	128	34	20	14	30	1.93
16548788--16548843	23	2.4	23	75	0	58	35	17	12	33	1.88
16549127--16549583	61	7.5	61	90	0	689	35	18	10	36	1.85
16553758--16553813	23	2.4	23	93	0	94	37	23	14	25	1.92
16564839--16564865	2	13.5	2	100	0	54	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66