genome.fa.s6.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  61  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23451764--23451869	45	2.4	44	84	6	142	33	14	16	35	1.89
23451885--23451972	45	2.0	45	83	0	113	35	13	11	39	1.81
23451968--23452018	25	2.0	25	88	0	75	39	1	1	56	1.22
23457941--23457989	25	1.9	26	83	4	64	42	10	2	44	1.49
23458069--23458124	29	1.9	29	92	0	94	57	3	10	28	1.49
23458877--23458935	26	2.2	27	79	11	68	35	0	0	64	0.94
23458884--23458937	26	2.1	25	86	3	72	35	0	0	64	0.94
23458942--23459015	32	2.4	31	70	16	73	48	0	1	50	1.09
23458908--23459017	46	2.3	48	81	10	129	44	0	0	54	1.06
23458985--23459018	17	2.1	15	89	10	50	55	0	0	44	0.99
23462031--23462064	17	2.0	17	88	0	50	29	0	14	55	1.40
23462682--23462710	2	14.5	2	100	0	58	51	0	0	48	1.00
23462468--23462955	256	1.9	254	86	2	676	41	5	4	47	1.48
23462760--23462810	22	2.3	21	80	9	57	41	7	1	49	1.43
23463046--23463107	26	2.4	26	75	0	70	24	3	8	64	1.36
23495608--23495632	3	8.3	3	100	0	50	32	32	36	0	1.58
23501955--23501990	2	18.5	2	94	5	65	0	50	0	50	1.00
23502021--23502047	2	13.5	2	100	0	54	0	51	0	48	1.00
23529029--23529183	23	6.8	23	83	3	188	22	9	29	38	1.86
23529035--23529183	46	3.3	46	88	2	212	22	10	29	38	1.87
23529029--23529182	69	2.2	68	90	1	236	22	9	29	37	1.86
23529215--23529276	22	2.9	21	85	4	79	45	24	8	22	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23529227--23529276	22	2.3	22	93	3	84	44	24	8	24	1.80
23538355--23538449	2	47.5	2	89	0	82	40	2	10	47	1.50
23542575--23542622	22	2.2	22	85	3	62	47	0	35	16	1.47
23543486--23543512	3	9.0	3	100	0	54	33	66	0	0	0.92
23557135--23557269	24	5.6	24	89	0	180	20	42	20	17	1.90
23557258--23557304	24	2.0	24	91	0	76	23	29	21	25	1.99
23557138--23557293	72	2.2	73	82	3	199	21	39	19	19	1.92
23560337--23560387	24	2.1	24	85	7	68	0	25	23	50	1.49
23562113--23562150	2	19.0	2	100	0	76	50	0	0	50	1.00
23579490--23579605	58	2.0	58	94	1	207	40	30	9	19	1.83
23595276--23595326	23	2.2	23	96	0	93	35	25	21	17	1.95
23605995--23606056	2	32.0	2	79	12	67	45	1	50	1	1.21
23616933--23616980	18	2.7	18	84	12	55	18	37	33	10	1.85
23624181--23624206	5	5.2	5	100	0	52	0	61	0	38	0.96
23625576--23625618	22	1.9	22	85	4	59	67	0	0	32	0.91
23639649--23639689	2	21.0	2	95	5	75	51	0	0	48	1.00
23642680--23642711	2	16.0	2	100	0	64	50	0	0	50	1.00
23643774--23643818	24	1.9	24	81	4	56	55	11	4	28	1.54
23649575--23649612	11	3.5	11	89	10	60	10	13	2	73	1.19
23665483--23665692	69	3.0	69	80	6	194	37	17	18	27	1.93
23665386--23665614	114	2.0	114	84	5	302	35	15	18	30	1.92
23665535--23665584	24	2.1	24	84	0	64	46	12	12	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23665625--23665721	45	2.2	45	88	0	140	32	17	19	29	1.95
23665738--23665784	24	1.9	25	82	4	60	42	14	14	27	1.86
23665787--23665870	29	2.7	32	76	10	93	41	11	10	35	1.77
23679178--23679215	18	2.1	18	100	0	76	21	18	18	42	1.90
23702493--23702530	19	2.0	19	94	0	67	34	0	0	65	0.93
23702495--23702536	19	2.2	19	86	0	57	33	2	0	64	1.07
23703504--23703544	2	20.5	2	94	0	73	48	0	2	48	1.14
23704828--23704853	7	3.7	7	100	0	52	38	0	0	61	0.96
23704845--23704883	19	2.0	20	90	5	62	30	0	0	69	0.89
23704887--23704914	14	2.0	14	100	0	56	42	0	0	57	0.99
23710323--23710354	2	16.0	2	100	0	64	0	50	0	50	1.00
23713360--23713393	11	3.1	11	88	12	52	44	8	2	44	1.50
23718049--23718086	12	3.2	12	88	0	58	7	7	52	31	1.59
23717976--23718089	60	1.9	60	90	0	183	14	10	47	27	1.77
23718036--23718104	24	2.9	24	76	8	77	14	10	47	27	1.76
23718000--23718091	48	1.9	48	81	0	112	14	10	47	27	1.77
23718081--23718143	33	1.9	33	93	0	108	12	6	50	30	1.65
23718115--23718187	24	3.0	24	69	15	78	9	9	47	32	1.68
23718133--23718211	24	3.3	24	71	13	81	10	12	49	27	1.73
23718115--23718218	48	2.2	48	98	0	199	9	10	49	30	1.69
23718289--23718338	18	2.7	18	84	6	55	8	0	70	22	1.13
23740232--23740260	10	2.7	11	94	5	51	82	0	17	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23741956--23741991	16	2.2	17	90	5	56	36	2	0	61	1.11
23745258--23745294	19	1.9	19	89	10	58	40	16	5	37	1.71
23761174--23761207	17	2.0	17	88	0	50	41	0	11	47	1.40
23770183--23770240	23	2.5	25	83	10	70	37	0	0	62	0.96
23773976--23774135	45	3.6	45	81	3	205	30	19	15	34	1.93
23778467--23778547	36	2.2	36	84	0	108	18	24	23	33	1.97
23788245--23788289	2	22.0	2	95	4	81	48	2	0	48	1.13
23790436--23790469	13	2.7	12	86	13	50	50	0	44	5	1.26
23790434--23790473	14	2.8	15	85	14	66	55	0	40	5	1.22
23791618--23791657	8	4.9	8	84	6	53	82	0	0	17	0.67
23791618--23791650	17	1.9	17	93	0	57	84	0	0	15	0.61
23793069--23793141	35	2.1	35	100	0	146	27	31	12	28	1.93
23800641--23800691	2	27.5	2	83	15	65	47	0	0	52	1.00
23804578--23804606	13	2.2	13	100	0	58	44	6	13	34	1.71
23805478--23805547	26	2.7	26	80	10	81	41	8	14	35	1.76
23805480--23805574	27	3.6	27	79	9	81	40	8	12	38	1.74
23805533--23805590	27	2.1	27	80	0	62	39	3	12	44	1.58
23805584--23805658	26	2.8	28	79	8	91	40	9	12	38	1.75
23805561--23805712	54	2.8	54	79	4	155	36	7	11	43	1.71
23805560--23805780	82	2.7	82	78	3	239	39	8	10	41	1.70
23805689--23805795	55	1.9	55	86	0	151	42	8	9	39	1.67
23816599--23816645	24	2.0	24	84	16	62	42	6	2	48	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23822046--23822072	2	13.5	2	100	0	54	51	0	0	48	1.00
23826491--23826520	2	15.0	2	100	0	60	50	0	50	0	1.00
23826544--23826572	2	14.5	2	100	0	58	48	0	51	0	1.00
23852448--23852481	13	2.8	13	86	13	54	61	0	0	38	0.96
23852876--23852920	23	2.0	23	82	8	56	48	0	2	48	1.13
23852964--23852996	15	2.1	16	94	5	59	54	0	3	42	1.15
23852958--23852998	16	2.5	17	84	15	59	51	0	2	46	1.14
23853151--23853196	20	2.3	20	81	7	58	45	4	0	50	1.21
23861740--23861786	20	2.4	20	79	13	53	42	2	0	55	1.12
23868752--23868806	22	2.5	22	93	0	92	25	7	18	49	1.73
23868833--23868927	45	2.1	45	86	3	129	30	11	22	35	1.89
23868833--23868927	23	4.2	22	73	5	73	30	11	22	35	1.89
23868938--23869011	22	3.3	23	77	7	73	47	24	5	22	1.72
23869056--23869107	22	2.4	22	83	0	77	55	21	1	21	1.53
23870427--23870466	17	2.2	19	82	13	57	45	0	0	55	0.99
23873288--23873326	19	2.2	18	86	13	55	38	0	0	61	0.96
23874455--23874491	19	2.0	18	94	5	65	0	27	0	72	0.84
23878778--23878804	2	13.5	2	100	0	54	51	0	0	48	1.00
23884345--23884377	15	2.2	15	94	0	57	24	0	9	66	1.20
23894220--23894254	2	18.0	2	88	5	54	51	0	48	0	1.00
23897316--23897366	23	2.2	23	96	0	93	52	13	7	25	1.67
23897803--23898086	135	2.1	135	83	4	358	26	22	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23898469--23898499	12	2.7	12	95	5	55	45	12	6	35	1.68
23912322--23912367	21	2.2	21	92	0	74	47	17	4	30	1.67
23916175--23916218	22	2.0	21	86	4	61	45	2	0	52	1.13
23916306--23916375	33	2.1	33	89	5	106	42	14	5	37	1.69
23917679--23917707	6	4.8	6	100	0	58	0	82	0	17	0.66
23927637--23927670	2	17.0	2	100	0	68	50	50	0	0	1.00
23927712--23927745	2	17.0	2	100	0	68	50	50	0	0	1.00
23936722--23936768	2	23.5	2	100	0	94	48	0	0	51	1.00
23945994--23946029	9	4.1	9	85	7	56	47	0	0	52	1.00
23947655--23947707	25	2.1	25	86	6	72	45	0	9	45	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66