genome.fa.s6.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  36  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12582258--12582299	20	2.0	21	86	13	61	69	0	28	2	1.01
12583262--12583348	2	43.5	2	95	0	156	49	0	0	48	1.01
12587612--12587750	36	3.7	38	73	5	120	21	37	19	21	1.94
12587862--12587888	2	13.5	2	100	0	54	48	0	0	51	1.00
12589260--12589287	2	14.0	2	100	0	56	50	0	0	50	1.00
12590042--12590104	18	3.5	18	79	12	67	3	28	0	68	1.05
12590053--12590123	28	2.6	27	80	10	72	2	32	0	64	1.08
12590062--12590125	27	2.5	26	83	16	80	3	32	0	64	1.10
12594906--12595009	38	2.7	38	83	5	131	22	13	39	25	1.90
12596386--12596434	20	2.5	20	96	0	89	0	36	0	63	0.95
12601942--12601983	21	2.0	22	90	4	68	50	7	26	16	1.71
12601943--12601989	21	2.2	21	84	3	58	55	8	21	14	1.66
12604311--12604349	19	2.1	19	85	0	51	51	0	10	38	1.36
12614983--12615101	35	3.4	35	88	0	166	26	10	33	28	1.90
12615130--12615172	2	21.5	2	100	0	86	48	0	0	51	1.00
12618706--12618746	2	20.5	2	100	0	82	51	0	0	48	1.00
12624159--12625440	171	7.5	169	80	4	1216	38	14	14	32	1.86
12624138--12625440	341	3.8	341	79	3	1427	38	14	13	32	1.86
12627714--12627762	15	3.3	15	77	11	55	22	6	14	57	1.59
12627801--12627840	5	8.0	5	85	0	53	42	0	20	37	1.52
12633122--12633246	55	2.3	55	79	8	139	29	16	20	34	1.94
12638311--12638350	20	2.0	21	85	5	55	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12657454--12657518	23	2.8	23	77	9	78	26	10	18	44	1.82
12658372--12658403	3	10.7	3	100	0	64	68	0	0	31	0.90
12660659--12660928	135	2.0	135	96	0	497	35	7	21	35	1.82
12661263--12661340	39	2.0	39	100	0	156	35	10	17	35	1.84
12661563--12661592	15	1.9	16	93	6	53	66	0	3	30	1.07
12665729--12665768	22	1.9	22	85	10	57	60	7	0	32	1.25
12667859--12668113	47	5.4	47	84	2	298	28	18	32	20	1.96
12668106--12668261	47	3.3	46	86	2	206	25	17	26	30	1.98
12668152--12668229	24	3.3	24	70	10	79	25	16	29	28	1.97
12668731--12668994	31	8.5	31	91	2	331	23	18	21	35	1.96
12668731--12668994	125	2.1	124	84	6	347	23	18	21	35	1.96
12670021--12670136	14	7.8	14	82	12	142	49	6	15	28	1.70
12670732--12670790	18	3.3	18	78	0	64	20	20	23	35	1.96
12671027--12671179	53	2.8	54	80	4	182	27	14	15	42	1.86
12673723--12673748	11	2.4	11	100	0	52	23	30	7	38	1.83
12678614--12678643	15	2.0	15	93	0	51	23	0	6	70	1.11
12683166--12683215	24	2.2	23	82	7	57	20	2	12	66	1.34
12689781--12689861	26	3.0	26	77	16	76	45	4	3	45	1.42
12690669--12690698	11	2.7	11	89	0	51	30	26	23	20	1.98
12694528--12694597	36	2.0	35	83	8	88	31	1	7	60	1.33
12696140--12696177	19	2.0	19	94	0	67	28	0	28	42	1.56
12697411--12697435	13	1.9	13	100	0	50	44	0	8	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12702108--12702163	6	9.3	6	88	0	85	50	0	30	19	1.48
12707598--12707669	32	2.4	30	90	6	110	34	15	13	36	1.87
12707571--12707675	29	3.6	29	79	9	106	33	11	13	41	1.80
12707644--12707719	26	3.0	25	77	12	75	31	13	14	40	1.84
12707620--12707834	75	2.8	77	78	7	229	33	14	13	38	1.86
12707620--12707870	77	3.2	77	76	9	249	32	15	14	37	1.87
12707817--12707989	45	3.8	45	83	3	213	30	16	17	35	1.93
12707809--12708003	90	2.2	90	83	1	248	30	16	18	33	1.94
12708490--12708528	20	2.0	20	100	0	78	48	15	5	30	1.66
12711672--12711720	24	2.3	23	83	16	61	71	0	0	28	0.86
12712210--12712278	24	2.8	25	78	8	79	33	13	46	7	1.70
12712635--12712698	21	3.1	21	81	16	57	68	0	4	26	1.09
12712652--12712699	21	2.2	23	85	14	66	72	0	6	20	1.05
12713239--12713271	2	17.0	2	93	6	59	48	0	51	0	1.00
12713361--12713386	13	2.0	13	100	0	52	46	0	53	0	1.00
12714186--12714706	267	1.9	268	86	1	733	38	12	17	31	1.87
12715949--12715988	21	1.9	21	90	10	64	57	5	7	30	1.48
12716139--12716231	34	2.7	34	89	0	141	36	24	17	21	1.94
12717500--12717538	2	19.5	2	100	0	78	51	0	0	48	1.00
12782186--12782337	68	2.2	67	81	6	171	26	22	21	29	1.99
12782211--12782419	68	3.1	67	82	3	222	25	19	22	33	1.97
12785077--12785118	15	2.9	14	89	7	57	73	0	0	26	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12786852--12786891	17	2.4	17	91	0	62	80	0	15	5	0.88
12788426--12788469	5	8.8	5	80	9	54	81	2	0	15	0.78
12788422--12788481	24	2.3	27	83	11	81	81	5	0	13	0.84
12788422--12788480	26	2.3	25	83	11	75	83	5	0	11	0.81
12788431--12788480	19	2.7	18	84	9	64	84	4	0	12	0.76
12788425--12788481	20	2.7	21	81	13	64	82	3	0	14	0.80
12791835--12791882	18	2.7	18	76	0	51	77	2	12	8	1.08
12800588--12801150	142	4.0	141	89	1	794	25	23	16	34	1.95
12800588--12801217	142	4.5	142	87	3	783	25	23	16	35	1.95
12801030--12801100	21	3.0	23	75	18	58	28	28	14	29	1.95
12801458--12801506	8	6.2	8	76	19	50	75	2	14	8	1.12
12801481--12801508	14	2.0	14	100	0	56	71	0	14	14	1.15
12803053--12803092	14	2.9	15	78	14	50	72	0	0	27	0.85
12803205--12803628	213	2.0	210	86	5	586	29	13	21	33	1.93
12804288--12804333	20	2.3	20	92	0	74	26	13	15	45	1.82
12805955--12806015	31	2.1	31	85	11	85	31	4	8	55	1.50
12809074--12809117	15	2.8	17	80	19	51	56	6	0	36	1.26
12813676--12813730	15	3.6	15	78	4	56	52	1	0	45	1.11
12831632--12831661	15	2.0	15	93	0	51	43	6	0	50	1.28
12831694--12831781	34	2.6	34	83	7	106	44	3	5	46	1.43
12840393--12840423	2	16.0	2	93	6	55	48	0	0	51	1.00
12841203--12841248	23	2.0	23	95	0	83	39	13	10	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12846362--12846418	27	2.2	26	81	9	64	49	7	0	43	1.29
12846455--12846547	41	2.2	41	81	9	109	53	2	1	43	1.19
12846517--12846569	27	2.0	27	100	0	106	49	3	0	47	1.19
12846338--12846592	80	3.2	80	69	19	228	54	3	0	40	1.23
12846614--12846680	15	4.3	15	68	27	50	46	1	1	50	1.19
12846598--12846680	22	3.5	23	83	9	96	48	1	1	49	1.16
12846342--12846628	155	1.9	155	91	3	418	54	3	0	41	1.22
12852601--12852684	24	3.4	26	69	12	68	45	9	7	38	1.64
12853803--12853853	28	1.9	26	84	11	68	66	7	25	0	1.18
12858407--12858573	42	4.0	42	89	0	244	22	22	32	22	1.98
12859795--12859861	30	2.2	30	89	7	100	34	13	23	28	1.93
12859870--12859963	37	2.5	37	89	3	145	26	11	24	37	1.90
12859870--12859980	37	3.0	37	84	2	143	26	10	26	36	1.89
12860421--12860698	140	2.0	140	94	0	484	31	26	16	25	1.97
12863793--12863848	20	2.8	20	84	10	69	33	17	19	28	1.95
12865259--12865323	2	32.5	2	78	6	69	44	0	6	49	1.27
12868101--12868138	20	1.9	20	100	0	76	26	5	18	50	1.68
12869553--12869606	21	2.5	22	82	14	76	57	5	22	14	1.58
12876522--12876559	19	2.0	19	94	0	67	28	0	28	42	1.56
12882177--12882250	31	2.4	32	75	6	80	41	6	21	29	1.79
12882415--12882444	16	1.9	15	93	6	51	36	23	6	33	1.81
12884295--12884353	21	2.8	21	94	0	109	49	0	25	25	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12887293--12887345	21	2.6	21	80	11	65	71	7	1	18	1.19
12889871--12889983	35	3.1	36	83	11	126	21	15	34	28	1.94
12892945--12893013	24	2.9	24	84	0	93	27	20	24	27	1.99
12901895--12901952	29	2.0	28	87	9	82	0	27	0	72	0.85
12906972--12907097	62	2.0	62	96	0	234	32	23	18	25	1.97
12911874--12912076	96	2.1	98	85	7	270	13	15	10	60	1.59
12912284--12912335	20	2.4	22	84	15	65	3	46	30	19	1.68
12916402--12916451	25	2.1	22	85	10	64	52	0	2	46	1.12
12925381--12925439	30	2.0	30	86	3	84	64	1	0	33	1.04
12927268--12927329	30	2.1	29	85	11	83	33	9	17	38	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66