genome.fa.s6.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  46  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16581271--16581308	18	2.1	19	85	5	51	65	0	13	21	1.26
16594872--16594999	38	3.4	38	83	4	170	32	17	17	32	1.94
16594872--16595056	38	4.9	38	80	4	164	30	18	17	32	1.94
16594877--16595056	76	2.4	77	81	10	210	31	18	17	32	1.94
16597669--16597704	18	2.0	18	89	10	56	33	5	0	61	1.19
16598018--16598063	24	2.0	23	86	4	65	50	0	0	50	1.00
16599485--16599530	2	23.0	2	100	0	92	50	0	0	50	1.00
16612608--16612686	23	3.4	23	82	5	79	25	15	35	24	1.94
16612552--16612659	57	1.9	57	92	0	180	25	11	37	25	1.89
16612776--16612831	23	2.4	23	84	0	76	28	14	33	23	1.94
16612678--16613594	104	9.1	101	73	13	565	29	14	32	22	1.94
16612875--16612935	23	2.7	23	78	0	68	27	13	37	21	1.90
16612679--16613594	196	4.6	197	80	9	884	29	14	32	22	1.94
16612951--16613414	93	4.8	93	73	12	324	29	14	32	23	1.94
16612744--16613591	300	2.8	301	77	3	875	29	14	32	22	1.94
16613235--16613426	23	8.3	23	69	5	100	29	14	33	22	1.94
16613133--16613486	197	1.8	196	86	1	521	29	14	32	23	1.94
16613133--16613529	197	2.0	196	83	2	492	30	14	31	22	1.94
16614039--16614521	55	8.8	55	84	1	560	13	11	29	45	1.79
16614478--16614556	35	2.3	35	88	4	115	10	7	35	46	1.66
16614611--16614700	31	2.9	31	84	0	108	28	14	20	36	1.92
16617104--16617274	81	2.1	81	83	4	211	20	19	32	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16618697--16618729	9	3.7	9	100	0	66	33	0	0	66	0.92
16618736--16619114	86	4.4	86	85	1	483	26	30	20	22	1.98
16618736--16619114	171	2.2	171	87	0	533	26	30	20	22	1.98
16619593--16619829	120	2.0	119	98	0	447	49	9	1	38	1.46
16619783--16619830	15	3.4	14	77	11	53	58	4	2	35	1.29
16623541--16623877	31	10.8	31	86	1	406	39	18	15	26	1.91
16628215--16628347	67	2.0	67	89	2	205	33	6	21	39	1.79
16629663--16629851	96	2.0	96	90	0	297	36	18	14	30	1.91
16642580--16642680	39	2.6	38	90	3	148	8	21	17	51	1.73
16665826--16665857	2	16.5	2	93	6	57	50	0	50	0	1.00
16665829--16665857	15	1.9	15	100	0	58	51	0	48	0	1.00
16665827--16665863	17	2.2	17	95	0	65	51	0	48	0	1.00
16671275--16671322	14	3.6	13	78	10	53	43	2	0	54	1.12
16671250--16671323	38	2.0	36	84	5	94	43	1	2	52	1.23
16671259--16671337	38	2.1	37	81	6	88	44	3	1	50	1.28
16671274--16671338	28	2.2	30	81	10	82	41	4	0	53	1.21
16673184--16673243	26	2.3	25	86	8	84	35	11	0	53	1.38
16685787--16685824	19	2.0	19	94	0	67	42	28	0	28	1.56
16686315--16686418	34	3.1	34	88	0	109	23	14	27	34	1.93
16686692--16686736	16	2.9	15	83	9	54	77	2	15	4	1.02
16686721--16686776	27	2.1	27	86	0	76	48	17	25	8	1.76
16692198--16692239	21	2.0	22	85	4	59	30	14	23	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16704300--16704465	67	2.5	67	77	13	171	53	19	15	11	1.73
16711396--16711452	30	2.0	29	83	10	73	59	3	19	17	1.51
16724089--16724186	47	2.1	47	88	3	144	34	18	17	29	1.94
16734162--16734284	39	3.3	39	83	10	161	21	13	35	29	1.92
16735672--16735780	35	3.2	34	74	19	111	33	24	13	27	1.93
16735678--16735806	67	1.9	66	90	4	206	33	23	14	28	1.94
16735700--16735846	66	2.2	67	84	3	190	38	25	12	23	1.89
16737649--16737947	60	5.0	60	88	2	424	24	32	17	26	1.97
16738607--16738650	20	2.1	22	87	8	65	0	34	0	65	0.93
16738747--16738782	18	2.0	18	88	0	54	2	22	0	75	0.94
16738848--16738879	13	2.4	14	85	15	50	0	31	0	68	0.90
16738983--16739023	19	2.2	19	95	0	73	0	24	4	70	1.06
16738959--16739012	26	2.1	26	83	13	67	0	25	1	72	0.95
16741254--16741333	37	2.2	37	88	0	115	30	15	25	30	1.95
16742441--16742483	17	2.5	17	96	0	77	37	25	6	30	1.82
16745235--16745283	18	2.9	17	82	14	57	24	0	6	69	1.11
16760637--16760689	23	2.3	23	76	0	61	37	0	18	43	1.51
16765218--16765364	55	2.6	56	79	5	152	31	14	21	31	1.94
16766027--16766091	30	2.2	29	83	8	78	21	15	27	35	1.94
16778904--16778970	28	2.4	28	90	7	102	35	17	16	29	1.92
16787792--16787875	25	3.2	25	79	5	87	23	19	32	25	1.97
16803073--16803136	19	3.4	19	77	10	69	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16803849--16803954	55	1.9	55	84	0	140	33	11	22	33	1.90
16807310--16807361	25	2.1	25	92	0	86	25	15	28	30	1.96
16808948--16808988	21	2.0	21	90	0	64	24	14	14	46	1.82
16810639--16810663	13	1.9	13	100	0	50	44	0	8	48	1.32
16827377--16827408	14	2.4	14	94	5	57	75	12	0	12	1.06
16832093--16832124	14	2.3	14	94	0	55	37	3	6	53	1.42
16842133--16842192	30	2.1	29	81	6	68	30	8	23	38	1.84
16850315--16850374	30	2.1	29	81	6	68	31	8	21	38	1.83
16861764--16861797	2	17.0	2	100	0	68	50	0	0	50	1.00
16863866--16863979	44	2.7	41	80	11	124	47	3	0	48	1.25
16863877--16863969	45	2.1	45	87	2	134	47	4	1	47	1.29
16867217--16867306	46	2.0	46	93	0	153	27	32	17	22	1.97
16869117--16869171	21	2.7	20	80	2	65	40	5	1	52	1.35
16873945--16873990	19	2.4	19	85	10	58	78	0	6	15	0.95
16888023--16888472	37	11.8	37	81	8	465	23	15	20	40	1.90
16888026--16888472	110	3.9	110	82	8	466	23	14	20	40	1.90
16888279--16888436	83	1.9	83	89	3	246	26	14	17	41	1.88
16888242--16888481	120	2.0	119	83	6	306	28	14	18	39	1.89
16888622--16888656	9	3.9	9	85	14	54	77	0	0	22	0.78
16890307--16890333	14	1.9	14	100	0	54	81	3	0	14	0.82
16890301--16890347	21	2.3	20	85	10	60	78	2	2	17	0.94
16890471--16890512	12	3.5	12	79	20	52	76	0	4	19	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16890482--16890540	18	3.4	17	78	4	55	71	1	1	25	1.05
16890456--16890540	25	3.4	26	75	23	76	69	1	4	24	1.15
16890538--16890592	13	3.9	14	76	23	53	41	10	7	40	1.68
16893098--16893134	6	6.2	6	96	0	56	48	16	24	10	1.77
16902059--16902097	9	4.3	9	83	0	51	41	17	10	30	1.83
16902059--16902097	18	2.2	18	95	0	69	41	17	10	30	1.83
16902154--16902191	20	1.9	20	88	0	58	68	5	0	26	1.11
16903413--16903645	66	3.5	66	89	0	360	17	17	24	41	1.90
16908040--16908225	55	3.4	54	78	3	192	11	12	32	43	1.79
16908254--16908314	23	2.7	23	81	0	86	24	21	31	22	1.98
16908295--16908376	31	2.6	31	82	3	94	28	18	20	32	1.96
16911846--16912207	31	11.7	31	79	3	388	37	21	16	24	1.94
16911846--16912207	93	3.9	91	87	3	447	37	21	16	24	1.94
16913306--16913368	14	4.3	14	77	15	65	55	1	9	33	1.42
16913309--16913367	29	2.0	31	86	6	86	55	1	10	32	1.43
16913306--16913368	15	4.3	14	76	6	63	55	1	9	33	1.42
16913308--16913386	16	5.1	15	75	10	70	53	5	8	32	1.54
16914842--16915140	31	9.6	31	77	3	289	40	19	19	20	1.91
16914871--16915076	93	2.2	93	91	0	340	41	18	19	19	1.90
16914842--16915145	93	3.3	93	80	7	321	40	18	19	20	1.91
16915505--16915793	156	1.9	155	83	4	375	28	20	19	32	1.96
16915510--16915847	156	2.2	155	79	3	356	29	18	18	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16917452--16917653	31	6.5	31	88	1	280	37	20	16	24	1.93
16918123--16918241	53	2.3	52	92	1	193	26	30	20	23	1.98
16918235--16918313	24	3.3	23	68	16	63	21	34	17	26	1.96
16918153--16918314	47	3.2	53	82	8	151	25	31	17	25	1.97
16918229--16918624	140	2.8	141	78	4	370	23	32	16	27	1.96
16918229--16918624	187	2.1	188	84	2	519	23	32	16	27	1.96
16918229--16918624	47	8.4	47	81	3	431	23	32	16	27	1.96
16918229--16918671	94	4.7	94	82	1	424	23	32	16	27	1.96
16951274--16951299	6	4.3	6	100	0	52	50	30	19	0	1.48
16955975--16956142	82	2.0	83	89	3	259	43	2	2	51	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66