genome.fa.s6.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  48  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17250110--17250168	25	2.3	25	85	2	73	49	11	0	38	1.40
17254430--17254486	26	2.2	26	87	0	78	42	0	1	56	1.10
17254446--17254511	27	2.5	26	78	4	69	40	3	3	53	1.32
17264196--17264313	24	5.0	24	75	6	116	41	13	14	30	1.84
17264243--17264344	48	2.1	48	83	0	132	44	15	14	25	1.85
17264243--17264343	24	4.2	24	84	0	112	44	14	14	25	1.84
17264321--17264407	45	1.9	45	90	0	138	35	17	19	27	1.94
17265249--17265322	31	2.4	31	86	0	103	29	2	6	60	1.36
17265780--17265856	41	1.9	40	89	7	120	42	9	32	15	1.78
17269470--17269494	13	1.9	13	100	0	50	48	8	0	44	1.32
17275060--17275094	5	7.0	5	93	0	61	37	20	0	42	1.52
17280849--17281002	51	3.0	51	98	0	299	47	24	5	22	1.73
17290426--17290468	17	2.7	15	82	10	50	25	0	11	62	1.29
17293453--17293558	38	2.7	40	82	2	126	22	16	37	23	1.93
17296026--17296133	28	3.8	28	78	9	119	41	8	12	37	1.72
17309728--17310060	28	11.7	29	81	6	376	39	13	10	36	1.79
17309728--17310060	57	5.8	57	80	5	370	39	13	10	36	1.79
17318221--17318264	22	2.0	22	95	0	79	27	6	22	43	1.78
17332940--17333096	43	3.7	43	87	5	219	26	19	34	20	1.96
17333102--17333162	26	2.3	26	100	0	122	24	3	40	31	1.71
17333305--17333348	21	2.1	21	82	0	52	20	27	22	29	1.99
17334658--17334704	18	2.6	18	86	0	58	19	17	25	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17334877--17334987	58	1.9	58	87	3	161	35	12	17	35	1.87
17335950--17335982	15	2.3	15	89	5	50	24	0	0	75	0.80
17337723--17337760	19	2.0	19	100	0	76	31	0	26	42	1.56
17341091--17341130	5	8.6	5	94	5	59	0	20	0	80	0.72
17341652--17341697	20	2.3	20	96	0	83	28	4	21	45	1.71
17341742--17341794	28	1.9	27	88	3	79	30	18	22	28	1.98
17341742--17341800	28	2.1	28	84	6	75	30	20	23	25	1.98
17426487--17426539	28	1.9	28	88	3	81	32	22	15	30	1.94
17426582--17426619	19	2.0	19	94	0	67	42	28	0	28	1.56
17434479--17434688	47	4.5	47	95	0	377	47	16	4	32	1.66
17442751--17442792	21	2.0	21	90	0	66	35	16	21	26	1.94
17447859--17447911	28	1.9	27	88	3	79	28	22	18	30	1.98
17447956--17448001	20	2.3	20	88	7	67	45	17	4	32	1.68
17449054--17449103	3	16.7	3	95	0	55	44	0	22	34	1.53
17453333--17453357	13	1.9	13	100	0	50	48	8	0	44	1.32
17461846--17461888	5	8.8	5	84	5	61	37	23	2	37	1.68
17461923--17461968	15	3.1	15	81	12	58	56	17	2	23	1.52
17471110--17471243	23	5.8	23	68	7	92	30	14	33	20	1.93
17471112--17471225	46	2.5	46	84	5	149	28	14	35	20	1.92
17471112--17471245	46	2.9	45	78	10	137	30	14	34	20	1.93
17471247--17471356	23	4.9	23	73	11	93	31	13	30	24	1.94
17471473--17471524	23	2.2	24	80	10	63	26	15	34	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17472255--17472425	31	5.5	31	87	0	234	28	15	21	35	1.94
17473893--17474259	151	2.4	151	79	0	385	34	17	13	33	1.90
17474030--17474414	151	2.5	154	79	2	364	34	17	15	32	1.91
17474904--17475088	81	2.3	81	81	2	219	27	15	29	28	1.96
17476740--17477491	76	10.0	76	81	1	715	35	26	15	22	1.94
17476745--17477415	228	2.9	227	83	2	799	35	27	14	22	1.94
17478462--17478532	30	2.4	30	100	0	142	21	18	30	29	1.97
17498732--17498817	23	3.7	23	85	3	109	37	19	11	31	1.88
17501188--17501286	38	2.6	38	86	1	126	35	1	5	58	1.27
17501221--17501286	20	3.4	20	75	23	77	39	1	1	57	1.17
17509424--17509448	2	12.5	2	100	0	50	52	0	0	48	1.00
17513763--17513814	28	1.9	27	81	14	63	28	19	19	32	1.96
17513860--17513905	20	2.3	20	92	0	74	43	23	4	28	1.73
17515741--17515793	23	2.3	23	96	0	97	37	9	22	30	1.86
17531959--17532044	23	3.6	24	82	6	113	36	19	12	31	1.90
17532276--17532399	63	2.0	63	80	0	140	40	12	26	20	1.88
17535501--17535546	20	2.3	20	88	7	67	32	4	17	45	1.68
17535591--17535643	28	1.9	27	88	3	79	30	18	22	28	1.98
17535591--17535649	28	2.1	28	84	6	75	30	20	23	25	1.98
17539993--17540030	19	2.0	19	100	0	76	26	0	31	42	1.56
17540073--17540131	28	2.1	28	84	6	75	28	18	23	28	1.98
17542475--17542503	9	3.0	10	90	10	51	41	0	6	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17558257--17558393	61	2.3	60	82	3	168	33	25	18	22	1.96
17558682--17558711	2	15.0	2	92	0	51	50	3	0	46	1.18
17558763--17558870	43	2.5	43	86	3	146	19	36	19	25	1.95
17559667--17559704	19	2.0	20	89	5	60	39	15	23	21	1.92
17574216--17574253	19	2.0	19	94	0	67	42	28	0	28	1.56
17580996--17581055	30	2.1	29	81	6	68	31	8	21	38	1.83
17597149--17597226	23	3.3	23	85	3	111	38	19	12	29	1.89
17602558--17602666	49	2.2	49	91	1	173	21	33	16	28	1.95
17602571--17602681	49	2.3	49	88	3	161	24	33	14	27	1.94
17608950--17609035	23	3.7	23	85	3	109	38	22	11	27	1.89
17610868--17610913	19	2.4	20	82	10	60	54	0	2	43	1.12
17611385--17611437	28	1.9	27	84	3	70	35	20	16	26	1.94
17612576--17612600	13	1.9	13	100	0	50	44	0	8	48	1.32
17619188--17619212	13	1.9	13	100	0	50	44	0	8	48	1.32
17621344--17621443	38	2.6	39	88	3	157	36	2	5	57	1.32
17625855--17625879	3	8.3	3	100	0	50	32	0	32	36	1.58
17627809--17627924	58	2.0	58	93	0	196	27	13	31	26	1.94
17637621--17637666	20	2.3	20	92	0	74	43	21	6	28	1.77
17651916--17651986	28	2.6	28	88	2	99	40	8	9	40	1.69
17651977--17652026	24	2.1	24	85	3	66	34	10	14	42	1.78
17652035--17652118	26	3.3	26	69	14	68	30	8	9	51	1.64
17652036--17652133	24	3.9	25	71	7	67	32	9	11	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17652212--17652267	15	3.7	15	73	17	53	50	3	0	46	1.19
17655380--17655516	69	2.0	69	94	4	242	32	8	8	50	1.63
17655481--17655631	79	2.0	75	86	5	212	35	11	9	43	1.75
17674833--17674895	32	2.1	30	82	11	76	23	3	7	65	1.34
17675317--17675456	69	2.0	68	95	1	253	38	10	4	47	1.57
17697592--17697632	19	2.0	21	90	9	68	51	4	4	39	1.45
17697732--17697810	39	2.0	39	97	0	149	45	2	6	45	1.42
17699155--17699354	42	4.8	42	79	2	188	23	19	35	22	1.96
17699160--17699331	83	2.1	84	82	1	202	23	20	34	21	1.96
17699170--17699354	83	2.2	84	79	0	192	23	19	35	22	1.96
17699395--17699436	2	21.0	2	100	0	84	50	0	0	50	1.00
17705838--17705895	22	2.5	23	83	10	66	22	3	17	56	1.55
17717981--17718005	13	1.9	13	100	0	50	44	0	8	48	1.32
17725293--17725345	28	1.9	27	84	3	70	22	16	22	37	1.94
17742379--17742424	21	2.2	21	85	11	60	28	13	0	58	1.35
17743436--17743469	17	2.1	15	89	10	50	0	20	0	79	0.73
17743901--17743951	20	2.4	21	90	6	77	72	5	5	15	1.24
17744189--17744248	29	2.1	29	100	0	120	26	18	13	41	1.87
17761283--17761329	3	15.7	3	95	0	85	34	29	0	36	1.58
17762828--17762920	8	11.8	8	77	5	73	27	0	40	30	1.56
17762828--17762920	16	5.9	16	76	5	82	27	0	40	30	1.56
17762833--17762912	33	2.5	32	89	4	124	28	0	40	30	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17764556--17764623	21	3.2	21	82	2	82	27	19	14	38	1.91
17766521--17766545	13	1.9	13	100	0	50	48	8	0	44	1.32
17769749--17769803	26	2.1	26	100	0	110	36	16	18	29	1.92
17771535--17771573	14	2.9	14	88	7	55	66	5	0	28	1.12
17775403--17775439	19	1.9	19	100	0	74	43	29	0	27	1.55
17776539--17776635	40	2.4	40	94	3	169	40	14	17	27	1.89
17777092--17777144	26	2.0	26	92	0	88	33	13	9	43	1.76
17777614--17777665	26	1.9	27	84	7	70	63	5	0	30	1.18
17778417--17778458	20	2.0	20	86	9	57	59	0	38	2	1.10
17782148--17782194	2	23.5	2	95	0	85	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66