genome.fa.s6.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  54  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19622841--19623036	55	3.6	55	79	0	221	40	13	7	38	1.72
19622940--19623054	27	4.2	27	86	2	167	47	14	3	33	1.61
19622841--19623054	82	2.6	83	78	2	225	42	13	7	37	1.72
19622863--19623120	27	9.6	27	75	4	90	41	13	7	37	1.73
19634672--19634701	12	2.5	12	94	0	51	76	3	6	13	1.11
19642892--19642979	38	2.3	38	100	0	176	30	23	10	35	1.88
19648433--19648457	5	5.0	5	100	0	50	0	20	0	80	0.72
19652065--19652112	2	24.5	2	91	4	80	47	0	2	50	1.12
19654784--19654996	114	1.9	111	80	12	245	46	7	5	41	1.53
19666488--19666596	47	2.3	47	87	0	146	37	14	22	25	1.92
19667750--19667839	38	2.5	35	78	10	94	70	1	2	26	1.06
19667864--19667914	19	2.6	19	76	11	50	70	0	0	29	0.87
19667865--19667946	29	2.6	31	79	13	87	70	0	2	26	0.99
19687292--19687347	23	2.4	23	77	11	69	44	0	3	51	1.18
19690578--19690606	2	14.5	2	100	0	58	51	0	48	0	1.00
19690664--19690690	2	13.5	2	100	0	54	51	0	48	0	1.00
19705262--19705447	90	2.1	90	90	8	299	35	14	13	36	1.85
19716188--19716228	20	2.1	19	86	4	55	19	0	12	68	1.21
19741796--19741851	23	2.4	21	82	14	58	57	0	0	42	0.99
19746935--19746974	12	3.5	12	83	13	57	82	0	0	17	0.67
19746945--19746972	10	2.8	10	100	0	56	85	0	0	14	0.59
19779318--19779350	2	16.5	2	93	0	57	48	3	0	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19781597--19781656	29	2.1	29	100	0	120	20	6	46	26	1.75
19783235--19783310	39	1.9	39	100	0	152	48	15	21	14	1.80
19784698--19784725	2	14.0	2	100	0	56	50	0	50	0	1.00
19785210--19785245	2	18.0	2	100	0	72	50	0	50	0	1.00
19802678--19802724	12	3.7	13	81	10	53	38	0	10	51	1.37
19802678--19802724	14	3.4	14	87	0	67	38	0	10	51	1.37
19807139--19807173	2	17.5	2	100	0	70	51	0	0	48	1.00
19820758--19820798	21	2.0	20	85	4	55	73	0	0	26	0.84
19827375--19827515	47	3.0	47	93	0	237	42	17	12	26	1.86
19829725--19829789	32	2.0	32	90	0	103	30	20	21	27	1.98
19832683--19832747	34	1.9	34	100	0	130	49	4	26	20	1.68
19834596--19834629	3	11.3	3	100	0	68	67	0	0	32	0.91
19835064--19835523	251	1.8	251	83	2	611	36	13	17	32	1.89
19837942--19837980	15	2.5	15	91	4	60	74	0	0	25	0.82
19838660--19838768	27	4.0	27	78	5	94	44	8	9	38	1.66
19850508--19850573	25	2.6	25	97	2	123	51	6	10	31	1.61
19858448--19858473	2	13.0	2	100	0	52	50	0	0	50	1.00
19863938--19863980	22	1.9	23	86	13	63	48	2	2	46	1.27
19864361--19864394	3	11.3	3	93	0	59	2	32	0	64	1.08
19864545--19864632	24	3.8	23	76	10	81	68	7	17	6	1.37
19869756--19869794	2	19.5	2	100	0	78	51	0	48	0	1.00
19885705--19885729	11	2.3	11	100	0	50	84	0	16	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19886220--19886263	18	2.7	15	75	18	52	45	36	18	0	1.49
19888539--19888781	86	2.9	83	84	7	303	30	15	15	38	1.88
19889467--19889545	9	8.8	9	77	0	59	48	35	12	3	1.59
19895141--19895173	2	16.5	2	100	0	66	48	0	0	51	1.00
19902280--19902313	2	17.0	2	93	0	59	47	0	0	52	1.00
19906690--19906892	52	3.9	52	88	1	282	37	16	24	21	1.93
19908575--19908612	2	19.0	2	94	0	67	47	0	2	50	1.15
19926965--19926999	2	17.5	2	100	0	70	51	0	0	48	1.00
19928251--19928288	19	2.1	19	90	9	62	42	0	0	57	0.98
19931365--19931503	18	7.7	18	88	3	217	5	48	27	18	1.71
19935060--19935145	33	2.6	34	85	9	106	27	2	1	68	1.09
19935068--19935145	34	2.3	35	82	6	97	26	2	1	69	1.09
19940850--19940891	6	7.5	6	84	15	63	83	0	0	16	0.65
19940857--19940913	15	3.8	15	83	0	69	77	0	0	22	0.77
19940851--19940891	21	2.0	21	100	0	82	85	0	0	14	0.60
19961500--19961550	20	2.6	19	79	11	59	54	1	17	25	1.53
19966381--19966418	19	2.0	19	94	0	67	42	28	0	28	1.56
19972704--19972749	20	2.3	20	96	0	83	45	21	4	28	1.71
19974344--19974383	17	2.3	17	86	4	53	72	17	5	5	1.21
19981635--19981665	15	2.1	14	94	5	53	77	0	0	22	0.77
19982484--19982532	20	2.5	20	84	12	66	57	0	18	24	1.41
19986627--19986751	57	2.1	60	80	5	139	42	6	9	41	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19986841--19986866	2	13.0	2	100	0	52	50	0	0	50	1.00
20002643--20002719	27	2.9	28	86	5	106	44	1	3	50	1.28
20002671--20002798	52	2.4	53	81	3	132	43	8	4	42	1.56
20004038--20004125	33	2.6	31	73	16	79	39	13	4	42	1.65
20011411--20011466	27	2.1	27	83	6	69	32	5	17	44	1.72
20018402--20018514	56	2.0	56	98	0	217	48	14	16	20	1.80
20021651--20021684	17	1.9	17	88	5	50	55	0	2	41	1.15
20022964--20023228	130	2.0	134	91	7	439	31	20	16	31	1.95
20040791--20040878	42	2.1	42	100	0	176	32	28	14	23	1.94
20044176--20044231	29	1.9	29	82	7	69	33	3	5	57	1.39
20049413--20049484	30	2.4	30	80	0	90	31	6	6	54	1.54
20049542--20049604	33	1.9	33	90	0	99	42	1	12	42	1.52
20049550--20049620	33	2.2	33	86	0	97	40	2	14	42	1.60
20049600--20049633	13	2.6	13	85	0	50	38	5	17	38	1.74
20063359--20063507	75	1.9	78	84	9	198	35	8	8	47	1.64
20065611--20065725	32	3.5	32	80	12	128	65	1	1	31	1.13
20065611--20065732	17	7.4	17	70	18	71	66	1	1	30	1.11
20067099--20067126	14	2.0	14	100	0	56	50	21	14	14	1.78
20073177--20073237	17	3.5	17	91	6	95	45	1	0	52	1.10
20073188--20073244	19	3.1	19	90	7	82	49	3	0	47	1.18
20073188--20073254	19	3.6	19	86	6	57	47	4	0	47	1.22
20073395--20073423	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20076005--20076057	2	27.0	2	96	3	99	50	0	0	49	1.00
20097092--20097240	76	2.0	76	93	0	253	38	14	8	38	1.77
20102662--20102687	2	13.0	2	100	0	52	50	0	0	50	1.00
20109357--20109384	2	14.0	2	100	0	56	50	0	0	50	1.00
20110370--20110405	18	2.0	18	94	0	63	75	2	22	0	0.94
20110599--20110646	21	2.5	20	83	10	55	60	2	0	37	1.09
20111526--20111601	35	2.2	36	88	4	111	50	1	1	47	1.18
20111586--20111653	16	4.3	16	73	16	61	42	0	1	55	1.08
20111733--20111786	27	2.0	27	88	0	81	53	1	3	40	1.29
20111882--20111913	16	2.1	16	94	5	57	12	0	0	87	0.54
20111995--20112062	22	3.2	21	80	10	84	30	0	1	67	0.99
20126572--20126603	2	16.0	2	100	0	64	0	50	0	50	1.00
20142725--20142767	14	2.9	15	82	6	52	76	0	18	4	0.95
20144092--20144134	15	2.9	15	78	0	50	44	4	16	34	1.68
20144085--20144142	30	1.9	30	85	0	80	43	5	15	36	1.69
20150028--20150279	127	2.0	127	97	0	477	46	16	15	21	1.84
20151237--20151270	11	3.1	11	91	8	52	55	0	32	11	1.36
20151714--20151809	44	2.2	41	78	16	113	45	4	2	47	1.33
20151663--20152031	187	2.0	187	94	3	638	46	5	1	46	1.37
20151900--20152007	45	2.5	41	81	14	126	46	4	0	48	1.29
20151903--20151996	45	2.1	45	90	4	145	45	5	1	47	1.32
20151934--20151999	16	4.3	15	71	21	57	46	3	1	48	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20155764--20155798	18	1.9	18	88	0	52	62	0	0	37	0.95
20155748--20155797	26	1.9	26	88	8	75	62	0	0	38	0.96
20155748--20155814	29	2.5	26	80	11	73	58	0	1	40	1.07
20156601--20156668	25	2.6	27	81	11	88	14	13	13	58	1.63
20157443--20157478	18	1.9	19	88	5	56	36	11	8	44	1.70
20160339--20160666	168	1.9	168	91	3	543	46	9	14	28	1.76
20161386--20161474	26	3.2	26	77	14	97	48	23	0	28	1.51
20161406--20161476	31	2.3	32	90	4	119	46	23	0	29	1.53
20161773--20161819	17	2.7	17	80	9	51	19	0	6	74	1.03
20175796--20175840	19	2.3	20	84	3	56	44	4	4	46	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66