genome.fa.s6.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  47  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16966555--16966630	5	15.2	5	74	15	68	73	0	1	25	0.91
16966570--16966666	30	3.2	30	76	7	81	69	0	4	26	1.07
16966552--16966725	50	3.6	48	73	11	140	69	0	2	27	1.02
16966676--16966721	20	2.3	20	85	10	67	71	0	0	28	0.86
16972226--16972309	32	2.6	31	81	11	89	66	2	3	27	1.20
16972251--16972310	32	1.9	30	90	6	93	63	1	3	31	1.20
16972505--16972558	15	3.6	15	76	0	54	25	22	9	42	1.83
16973217--16973255	15	2.7	14	76	7	51	76	0	2	20	0.90
16973208--16973253	22	2.0	24	87	8	69	71	2	4	21	1.14
16976132--16976438	161	1.9	158	97	2	578	48	7	14	28	1.72
16976415--16976507	11	8.5	11	67	13	50	54	2	1	41	1.19
16976648--16976758	43	2.6	43	89	1	168	40	18	1	38	1.62
16985974--16986019	19	2.4	20	82	10	60	54	0	2	43	1.12
16986421--16986458	20	1.9	20	100	0	76	28	5	21	44	1.73
16990109--16990134	2	13.0	2	100	0	52	50	0	0	50	1.00
16994785--16994829	15	2.9	15	90	3	63	0	40	0	60	0.97
16996543--16996604	2	31.0	2	90	0	88	48	3	0	46	1.18
16996823--16996847	2	12.5	2	100	0	50	52	0	48	0	1.00
17007605--17007645	20	2.0	21	85	4	57	0	19	2	78	0.87
17007813--17007839	2	13.5	2	100	0	54	48	0	0	51	1.00
17009055--17009088	17	2.0	17	88	0	50	38	2	5	52	1.41
17011889--17011959	32	2.3	32	87	4	101	59	8	9	22	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17031435--17031482	18	2.5	20	86	6	73	47	0	0	52	1.00
17031431--17031505	10	7.4	10	73	18	57	45	0	1	53	1.08
17031571--17031715	46	3.2	44	77	7	132	42	1	5	50	1.34
17031748--17031787	1	40.0	1	100	0	80	100	0	0	0	0.00
17031946--17032014	33	2.1	34	86	8	97	24	14	1	59	1.44
17040877--17040944	28	2.4	29	76	9	77	55	1	2	39	1.24
17041115--17041189	34	2.3	33	86	4	98	45	16	6	32	1.73
17041115--17041189	33	2.3	34	84	9	93	45	16	6	32	1.73
17042735--17042769	16	2.2	16	90	5	54	60	0	0	40	0.97
17042897--17042935	13	3.2	12	82	13	53	71	0	0	28	0.86
17044653--17044684	2	16.0	2	100	0	64	50	0	0	50	1.00
17045158--17045208	15	3.3	16	78	13	54	74	0	3	21	0.98
17061085--17061120	4	9.0	4	93	0	63	47	25	2	25	1.65
17077990--17078046	29	2.0	28	90	10	89	35	0	0	64	0.93
17078068--17078110	19	2.3	18	80	4	50	48	11	0	39	1.40
17078226--17078302	31	2.5	31	78	10	88	59	3	1	35	1.24
17079866--17080074	108	1.9	108	88	0	310	44	4	15	35	1.67
17080256--17080289	17	2.1	16	89	10	52	38	17	0	44	1.49
17080254--17080293	17	2.3	18	80	20	50	37	15	0	47	1.45
17086275--17086321	18	2.6	19	87	12	64	72	2	2	23	1.06
17098685--17098725	15	2.9	15	78	10	50	34	0	0	65	0.93
17098687--17098725	14	2.8	14	84	7	53	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17098784--17098944	20	8.4	20	67	26	66	31	0	1	67	0.98
17098789--17098880	48	1.9	47	82	6	114	31	0	1	67	0.98
17098839--17098928	33	2.7	32	83	15	103	28	0	1	70	0.95
17099740--17099853	58	2.0	58	87	0	165	33	9	14	42	1.79
17103389--17103546	46	3.5	43	77	9	147	46	5	3	45	1.41
17103514--17103581	35	1.9	35	100	0	136	50	4	0	45	1.22
17103572--17103649	10	7.7	10	74	17	54	51	0	1	47	1.09
17103518--17103625	35	3.2	35	84	12	129	48	2	0	49	1.16
17104313--17104367	28	1.9	28	85	3	74	29	7	5	58	1.48
17105004--17105227	111	2.0	111	96	0	412	41	13	11	33	1.80
17108177--17108232	26	2.4	24	85	14	73	41	32	0	26	1.56
17112220--17112249	15	2.0	15	100	0	60	60	6	26	6	1.47
17127299--17127602	153	2.0	153	92	0	509	27	20	14	36	1.92
17128497--17128549	21	2.5	21	84	0	70	26	15	16	41	1.88
17130607--17130666	23	2.6	23	89	0	84	25	31	18	25	1.97
17130691--17130752	23	2.7	23	74	0	61	17	29	16	37	1.92
17130808--17130972	23	7.3	23	72	8	115	23	30	13	32	1.93
17130808--17130955	44	3.3	43	77	5	143	24	30	12	33	1.92
17131000--17131067	23	3.0	23	93	0	109	23	36	13	26	1.92
17132356--17132419	29	2.2	29	83	5	76	57	4	9	28	1.50
17137486--17137519	2	16.5	2	93	6	59	50	0	2	47	1.16
17144723--17144967	123	2.0	123	95	1	447	40	10	7	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17146362--17146437	29	2.7	29	89	2	118	47	9	26	17	1.77
17146358--17146453	29	3.3	29	85	4	88	50	8	25	16	1.73
17146689--17146867	35	5.4	35	80	11	196	17	21	18	41	1.90
17146730--17146790	26	2.3	26	97	0	113	16	22	22	37	1.93
17146707--17146821	61	1.9	61	90	0	185	20	21	20	38	1.94
17147157--17147287	41	3.2	40	76	7	156	30	6	8	54	1.57
17148194--17148263	29	2.4	29	90	0	113	45	10	25	18	1.80
17148543--17148593	26	2.0	26	96	0	93	17	23	23	35	1.95
17152383--17152654	102	2.7	102	82	0	328	41	13	21	22	1.88
17153938--17154007	29	2.4	29	87	0	104	45	10	25	18	1.80
17153938--17154023	29	3.0	28	84	3	100	46	9	25	18	1.79
17154259--17154411	35	4.4	35	85	0	189	19	20	17	42	1.89
17163439--17163623	98	1.9	97	95	1	334	35	11	20	31	1.89
17168561--17168598	4	9.5	4	100	0	76	26	0	23	50	1.50
17169452--17169485	2	17.5	2	87	6	52	47	0	0	52	1.00
17169450--17169487	12	3.2	12	88	3	60	42	0	0	57	0.98
17170159--17170183	2	12.5	2	100	0	50	52	0	0	48	1.00
17171739--17171775	3	12.3	3	88	11	58	32	0	0	67	0.91
17179959--17179987	13	2.1	14	93	6	51	31	6	0	62	1.22
17180207--17180241	3	12.0	3	93	6	63	31	0	0	68	0.90
17181391--17181434	17	2.5	17	85	10	54	27	0	0	72	0.85
17181594--17181786	51	3.6	51	71	14	179	34	20	12	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17181645--17182228	59	9.9	59	83	6	727	35	19	12	32	1.89
17181553--17182228	113	5.8	117	87	3	646	35	19	12	32	1.89
17181707--17181807	51	2.0	51	84	0	130	32	21	11	33	1.90
17190694--17190722	13	2.1	14	93	6	51	31	6	0	62	1.22
17192112--17192139	3	9.3	3	100	0	56	32	0	0	67	0.91
17197261--17197318	2	30.0	2	76	13	59	48	5	1	44	1.35
17197318--17197348	2	15.5	2	93	0	53	3	0	45	51	1.17
17199263--17199294	2	16.0	2	100	0	64	0	50	0	50	1.00
17201245--17201269	7	3.6	7	100	0	50	88	0	12	0	0.53
17206656--17206745	45	2.0	45	82	8	112	43	4	6	45	1.50
17206754--17206793	21	1.9	21	85	10	55	45	10	10	35	1.71
17211016--17211087	11	6.5	11	72	19	60	25	2	0	72	0.98
17211016--17211104	22	4.1	20	77	17	72	24	3	0	71	1.01
17211014--17211107	15	6.2	15	70	15	61	25	3	0	71	1.01
17211005--17211075	35	2.0	35	84	10	92	26	1	1	70	1.04
17211224--17211258	4	8.8	4	87	12	54	22	2	0	74	0.95
17211313--17211371	12	4.9	12	74	14	50	22	5	0	72	1.03
17212557--17212586	2	15.5	2	93	6	53	0	46	0	53	1.00
17213296--17213717	38	11.5	37	80	11	386	41	19	15	23	1.90
17213296--17213717	75	5.7	75	78	11	376	41	19	15	23	1.90
17213296--17213724	113	3.9	112	79	12	374	41	19	15	24	1.89
17225868--17225939	25	3.2	20	71	21	54	26	1	0	72	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17225866--17225958	14	6.9	14	72	19	56	26	2	0	70	0.98
17225859--17225956	17	6.2	16	68	22	64	25	2	1	71	1.03
17225857--17225927	32	2.2	32	82	9	83	26	1	1	70	1.04
17225866--17225956	32	2.9	34	72	21	81	26	2	0	71	0.97
17225871--17225958	42	2.1	42	81	12	101	26	2	0	71	0.98
17225907--17225974	27	2.4	27	78	7	73	25	4	0	70	1.05
17225884--17225974	42	2.2	40	77	12	96	25	4	0	70	1.06
17229622--17229655	18	1.9	17	88	5	50	8	17	2	70	1.25
17243062--17243086	13	1.9	13	100	0	50	0	8	8	84	0.79
17249962--17250016	21	2.8	20	84	15	71	49	1	0	49	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66