genome.fa.s6.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  27  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9062314--9062396	42	2.0	43	83	7	107	25	18	33	22	1.96
9062931--9062967	19	1.9	19	88	0	56	29	27	21	21	1.99
9064885--9065017	42	3.2	42	84	4	187	24	19	33	21	1.97
9081258--9081336	41	1.9	41	89	0	122	26	13	22	36	1.92
9089514--9089547	2	17.5	2	87	6	52	44	0	2	52	1.16
9091660--9091711	20	2.6	20	96	0	95	34	7	28	28	1.85
9099267--9099414	36	4.1	35	81	3	152	30	31	13	25	1.94
9099267--9099431	72	2.2	74	86	3	217	29	32	13	24	1.94
9099306--9099436	36	3.5	38	83	3	153	29	32	14	23	1.94
9100884--9100987	2	48.0	2	84	5	91	43	10	0	44	1.45
9101028--9101152	42	3.0	42	83	4	171	21	30	23	24	1.99
9102995--9103027	13	2.4	14	90	5	50	78	0	18	3	0.87
9105972--9106002	15	2.1	15	93	0	53	32	19	12	35	1.90
9134250--9134292	22	2.0	22	95	0	77	51	9	25	13	1.71
9137550--9137713	42	3.9	42	84	3	186	26	18	34	21	1.96
9137737--9137767	2	15.5	2	93	0	53	51	3	0	45	1.17
9140011--9140087	24	3.3	22	70	19	66	41	15	9	33	1.79
9147921--9147945	11	2.3	11	100	0	50	16	32	12	40	1.84
9149497--9149592	35	2.7	36	82	6	115	28	34	13	23	1.93
9152326--9152462	73	1.9	73	89	0	211	29	34	13	23	1.92
9154849--9154923	24	3.2	24	64	17	66	48	10	5	36	1.61
9154855--9154928	23	3.2	23	64	17	62	43	12	5	39	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9154827--9154995	47	3.6	47	88	4	216	50	10	4	34	1.58
9156174--9156202	15	1.9	15	100	0	58	41	0	10	48	1.37
9161094--9161460	60	6.0	61	86	3	445	25	30	16	27	1.97
9161998--9162052	15	3.2	17	75	15	60	0	29	0	70	0.87
9161999--9162198	69	2.9	69	85	3	244	2	33	5	59	1.30
9162133--9162170	18	2.2	17	86	13	51	2	34	0	63	1.09
9162139--9162186	22	2.2	22	81	7	53	4	35	2	58	1.29
9165011--9165272	62	4.2	62	81	1	285	24	21	18	35	1.96
9165010--9165277	124	2.2	125	86	3	362	24	22	18	35	1.95
9167286--9167394	43	2.5	43	77	2	121	19	38	18	23	1.93
9170504--9170561	25	2.4	25	88	2	82	20	32	17	29	1.95
9171854--9171920	15	4.5	15	76	10	57	0	34	1	64	1.03
9171858--9171916	30	2.0	30	89	0	91	0	35	1	62	1.05
9175155--9175270	42	2.8	42	80	5	119	19	35	22	22	1.96
9182320--9182399	42	1.9	42	94	0	142	23	32	17	26	1.97
9182430--9182476	2	23.5	2	100	0	94	51	0	0	48	1.00
9182619--9182734	42	2.8	42	80	5	119	19	35	22	22	1.96
9186966--9187121	63	2.5	63	80	2	188	24	30	19	25	1.98
9187860--9187932	37	2.0	36	100	0	137	32	13	35	16	1.88
9191240--9191342	26	3.9	26	75	17	70	28	14	17	39	1.89
9191167--9191343	29	6.4	28	73	18	129	31	13	16	38	1.88
9191349--9191555	24	8.8	24	77	6	217	20	18	21	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9191216--9191382	74	2.1	78	84	10	209	26	16	19	37	1.93
9191321--9191619	117	2.6	114	86	4	402	24	18	20	37	1.94
9191373--9191546	93	1.9	92	85	1	240	20	18	22	37	1.94
9197215--9197282	19	3.6	19	68	7	57	22	14	38	25	1.92
9197219--9197320	38	2.6	40	84	3	136	21	15	39	23	1.92
9206442--9206487	15	3.1	15	84	12	67	56	19	2	21	1.52
9210093--9210152	28	2.1	28	84	6	77	25	21	20	33	1.97
9212575--9212620	15	3.1	15	84	12	67	56	19	2	21	1.52
9218667--9218696	15	1.9	15	93	6	51	73	6	0	20	1.05
9223054--9223078	12	2.1	12	100	0	50	44	0	0	56	0.99
9232145--9232240	50	1.9	49	93	0	156	56	15	1	26	1.46
9244446--9244486	21	1.9	21	85	5	55	53	7	21	17	1.67
9244444--9244491	21	2.3	20	75	10	51	58	6	20	14	1.58
9251121--9251161	21	1.9	22	90	5	66	51	7	24	17	1.70
9251121--9251165	20	2.2	21	84	11	58	55	6	22	15	1.63
9251119--9251166	21	2.3	20	79	10	60	56	6	22	14	1.61
9254486--9254620	59	2.3	59	93	0	225	34	20	11	33	1.88
9272778--9272837	30	2.1	29	81	6	68	31	8	21	38	1.83
9282368--9282409	20	2.2	19	84	16	52	30	2	26	40	1.69
9294108--9294159	28	1.9	27	81	14	63	28	17	21	32	1.96
9293942--9295196	644	1.9	645	91	1	2032	32	18	14	34	1.91
9298638--9299428	45	17.8	45	73	8	483	40	13	16	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9298690--9299427	265	2.8	264	81	5	842	40	14	16	29	1.87
9306455--9306489	15	2.3	15	90	5	52	68	14	5	11	1.37
9309775--9309915	73	1.9	73	85	7	194	29	33	14	22	1.94
9314696--9314787	35	2.6	35	87	0	130	25	32	10	31	1.90
9316572--9316619	25	1.9	25	95	0	87	25	8	16	50	1.73
9317792--9317950	54	2.9	54	84	6	196	22	41	15	21	1.89
9318135--9318171	2	18.5	2	100	0	74	48	0	0	51	1.00
9321135--9321175	20	2.0	20	86	9	57	73	0	9	17	1.09
9322842--9323086	126	2.0	124	88	0	355	24	25	9	40	1.86
9325408--9325508	35	2.8	36	80	6	96	30	34	12	21	1.91
9325376--9325490	36	3.2	36	75	6	108	29	33	14	22	1.94
9325465--9325569	52	2.0	52	98	0	201	31	33	14	20	1.93
9326368--9326424	19	2.9	19	84	10	62	68	1	26	3	1.15
9329221--9329316	42	2.3	41	85	7	131	29	14	30	26	1.95
9333296--9333340	23	2.0	23	95	0	81	13	26	33	26	1.93
9335862--9335934	35	2.1	35	86	0	101	24	8	34	32	1.85
9359625--9359667	22	2.0	22	95	0	77	18	20	23	37	1.94
9364928--9365030	37	2.7	38	83	7	118	21	17	39	21	1.92
9365094--9365127	2	17.0	2	100	0	68	50	0	0	50	1.00
9366887--9366994	41	2.7	40	91	2	171	24	12	35	27	1.92
9366998--9367206	54	3.9	54	87	0	301	19	13	43	23	1.86
9368911--9368961	22	2.4	21	87	6	75	15	25	5	52	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9369419--9369460	2	21.0	2	100	0	84	50	0	0	50	1.00
9369732--9369779	2	24.0	2	100	0	96	50	0	0	50	1.00
9388562--9388682	37	3.3	37	92	2	199	28	9	38	23	1.87
9395969--9396163	37	5.3	37	89	1	293	28	10	37	24	1.88
9397164--9397349	92	2.0	92	96	0	345	31	9	20	38	1.84
9397877--9398020	35	4.1	35	94	0	243	29	33	6	30	1.82
9398930--9398971	20	2.0	21	90	4	68	42	7	26	23	1.80
9402664--9402701	13	2.7	14	88	8	51	76	2	21	0	0.91
9404379--9404411	11	2.7	13	86	13	52	33	6	18	42	1.75
9409396--9409486	42	2.1	43	88	6	132	21	35	20	21	1.96
9409483--9409574	42	2.2	42	80	7	107	21	30	20	27	1.98
9409402--9409575	95	1.8	96	84	1	242	22	32	19	24	1.97
9422047--9422156	57	2.0	55	89	3	166	40	9	14	35	1.78
9435848--9435965	39	2.8	42	83	12	152	37	18	20	23	1.94
9440499--9440535	2	19.5	2	89	10	60	51	0	0	48	1.00
9440580--9440612	4	8.2	4	93	0	57	51	21	0	27	1.48
9443021--9443059	16	2.4	16	82	0	51	51	5	23	20	1.67
9443424--9443453	14	2.1	14	93	0	51	70	0	30	0	0.88
9443422--9443461	21	2.0	20	95	5	71	70	0	30	0	0.88
9444230--9444289	30	2.1	30	84	6	79	31	3	21	43	1.69
9473236--9473292	30	1.9	30	82	7	71	31	21	1	45	1.62
9476444--9476489	21	2.2	21	100	0	92	28	23	0	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9481655--9481889	67	3.5	68	81	5	300	24	14	25	34	1.94
9481653--9481757	32	3.1	34	75	15	103	21	12	27	38	1.90
9481677--9481850	35	5.1	35	70	12	121	27	14	25	32	1.94
9486433--9486457	13	1.9	13	100	0	50	48	8	0	44	1.32
9491819--9491851	15	2.3	15	89	5	50	15	12	21	51	1.75
9492080--9492119	2	20.0	2	100	0	80	50	0	0	50	1.00
9492187--9492239	17	3.1	17	80	0	70	37	20	30	11	1.88
9493187--9493380	35	5.7	34	74	8	137	27	14	22	35	1.93
9493177--9493394	67	3.3	66	85	5	278	26	13	23	36	1.92
9493232--9493340	32	3.3	31	78	12	103	29	16	21	33	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66