genome.fa.s6.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  9  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3007287--3007434	69	2.1	69	91	0	242	25	18	20	35	1.95
3007242--3007370	45	2.9	45	83	4	161	26	17	19	36	1.94
3007339--3007389	24	2.1	24	85	0	66	21	15	21	41	1.90
3006953--3007437	114	4.3	112	79	7	484	28	18	18	34	1.95
3016184--3016591	203	2.0	203	90	0	638	33	11	22	32	1.90
3031998--3032043	23	2.0	23	87	4	67	21	10	10	56	1.64
3067013--3067053	21	1.9	22	85	5	57	41	19	0	39	1.52
3069683--3069736	24	2.3	24	87	3	74	38	5	14	40	1.70
3073511--3073691	60	3.0	60	90	1	283	24	32	17	25	1.97
3074280--3074321	21	2.0	22	85	4	59	0	26	7	66	1.17
3074450--3074494	13	3.5	13	78	3	56	0	26	0	73	0.84
3074517--3074563	16	2.9	16	84	15	62	0	23	0	76	0.78
3074519--3074566	13	3.8	13	83	10	64	0	22	0	77	0.78
3074515--3074563	19	2.7	19	84	12	68	0	24	0	75	0.80
3074517--3074574	19	2.7	22	75	25	61	0	24	1	74	0.92
3074689--3074733	18	2.5	18	82	10	56	0	31	2	66	1.04
3079701--3079999	60	5.0	60	88	2	415	24	32	16	25	1.96
3080682--3080713	15	2.1	16	94	5	57	0	37	0	62	0.95
3080793--3080886	31	3.1	31	86	8	122	2	29	1	67	1.10
3080836--3080895	4	16.2	4	72	27	53	0	23	1	75	0.90
3080839--3080885	6	7.3	7	86	13	66	0	23	0	76	0.78
3080836--3080884	19	2.7	19	93	6	84	0	24	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3080801--3080907	31	3.6	28	81	11	106	0	28	1	69	1.05
3080836--3080895	19	3.3	18	82	17	79	0	23	1	75	0.90
3080836--3080918	36	2.3	36	84	12	91	0	26	1	72	0.92
3080991--3081032	12	3.3	13	84	12	52	0	26	2	71	0.98
3080988--3081049	19	3.3	18	81	16	65	0	24	3	72	0.99
3080986--3081033	23	2.0	24	84	11	64	0	25	2	72	0.95
3080991--3081049	25	2.4	24	80	13	66	0	25	3	71	1.02
3082423--3082456	17	2.0	17	88	0	50	41	11	5	41	1.66
3087607--3087644	20	1.9	20	100	0	76	28	5	21	44	1.73
3087698--3087755	28	2.1	27	78	12	64	32	22	20	24	1.98
3092635--3092680	17	2.7	17	77	12	58	36	6	0	56	1.25
3093745--3093775	2	15.5	2	93	0	53	45	3	0	51	1.17
3096937--3097117	97	1.8	99	80	3	222	41	13	13	30	1.83
3097088--3097142	28	2.0	28	88	0	83	54	12	5	27	1.60
3096996--3097314	125	2.5	125	77	6	313	44	11	12	31	1.78
3097218--3097270	28	1.9	27	84	3	70	49	11	11	28	1.73
3101033--3101066	17	2.0	17	88	0	50	8	11	0	79	0.94
3101881--3101955	29	2.7	28	82	10	82	34	8	14	42	1.75
3101906--3101975	31	2.3	29	83	9	79	37	11	14	37	1.82
3102011--3102119	51	2.1	52	91	1	175	32	22	15	29	1.95
3102092--3102206	45	2.6	45	88	0	158	30	21	15	32	1.95
3102236--3102287	24	2.2	24	92	0	86	26	13	19	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3105562--3105606	2	22.5	2	100	0	90	48	0	0	51	1.00
3105612--3106051	219	2.0	218	99	0	871	31	13	15	39	1.86
3106324--3106367	20	2.2	20	84	4	54	36	15	9	38	1.80
3107422--3107446	12	2.1	12	100	0	50	68	8	0	24	1.16
3107872--3107934	28	2.2	28	80	5	74	69	3	4	22	1.21
3108865--3108905	2	20.5	2	100	0	82	51	0	0	48	1.00
3123152--3123197	15	3.1	15	84	12	67	56	19	2	21	1.52
3126992--3127031	20	2.1	19	86	9	55	35	22	17	25	1.95
3130333--3130759	214	2.0	215	97	0	795	34	14	20	30	1.92
3139677--3139800	64	2.0	63	87	4	178	30	8	2	58	1.42
3141103--3141171	34	2.0	34	97	0	129	44	10	20	24	1.82
3144685--3144757	29	2.6	29	76	10	87	42	0	0	57	0.98
3144688--3144751	27	2.4	28	80	12	82	40	0	0	59	0.97
3144860--3144891	14	2.2	15	94	5	57	46	0	0	53	1.00
3164358--3164427	22	2.9	24	77	16	65	0	28	0	71	0.86
3164381--3164419	17	2.2	18	86	4	53	0	28	0	71	0.86
3164446--3164479	16	2.2	15	89	5	50	0	26	0	73	0.83
3165291--3165340	2	25.0	2	100	0	100	50	0	0	50	1.00
3166381--3166413	15	2.2	15	94	0	57	45	0	15	39	1.46
3168169--3168243	37	2.0	37	100	0	150	48	5	10	36	1.61
3172479--3172557	31	2.5	31	100	0	158	55	5	8	30	1.52
3172952--3172978	12	2.2	12	100	0	54	33	48	0	18	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3180944--3180987	21	2.1	21	86	0	61	29	20	15	34	1.94
3187391--3187662	136	2.0	135	94	2	483	24	15	8	51	1.71
3189522--3189567	20	2.3	20	92	0	74	28	4	19	47	1.68
3192812--3192919	28	3.8	28	91	3	164	22	14	21	41	1.89
3192946--3192972	8	3.4	8	100	0	54	14	0	44	40	1.46
3193023--3193084	26	2.4	26	86	2	81	35	12	12	38	1.82
3193862--3193903	22	1.9	22	85	0	57	26	11	14	47	1.78
3193914--3193974	23	2.7	23	89	0	95	36	29	11	22	1.90
3193934--3194127	69	2.8	69	85	5	255	36	28	12	22	1.90
3193934--3194127	22	8.5	22	76	13	169	36	28	12	22	1.90
3193934--3194128	48	4.2	45	78	10	182	36	28	12	22	1.90
3194718--3194834	59	2.0	59	81	0	135	35	12	17	35	1.88
3204634--3204664	16	1.9	16	93	0	53	45	0	0	54	0.99
3204949--3204989	21	2.0	21	85	9	57	46	2	0	51	1.14
3204960--3205022	22	2.9	21	80	15	65	44	4	0	50	1.23
3204950--3205020	23	3.0	23	84	12	83	45	4	0	50	1.21
3204954--3205406	202	2.3	191	82	9	506	40	7	4	46	1.53
3205021--3205406	202	2.0	199	84	8	522	40	8	5	46	1.56
3220153--3220197	20	2.2	21	84	4	56	48	0	8	42	1.34
3222447--3222484	19	2.0	19	94	0	67	42	28	2	26	1.69
3228563--3228608	19	2.4	19	89	7	67	56	0	2	41	1.11
3229012--3229049	20	1.9	20	94	0	67	28	7	21	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3230270--3230294	13	1.9	13	100	0	50	44	0	8	48	1.32
3237396--3237463	21	3.2	21	87	2	91	39	14	17	27	1.89
3238827--3238859	6	5.5	6	86	13	50	15	0	0	84	0.61
3238906--3238936	11	2.7	11	95	5	53	77	6	0	16	0.97
3239113--3239163	22	2.3	22	93	0	84	19	39	19	21	1.93
3239218--3239276	8	7.9	7	85	10	73	27	42	1	28	1.65
3239216--3239276	15	4.1	15	83	10	72	27	42	1	27	1.65
3246248--3246468	22	10.0	22	76	4	86	23	10	26	39	1.87
3246263--3246422	65	2.4	67	80	4	164	23	11	25	39	1.88
3246343--3246468	45	2.8	44	79	8	119	22	11	29	37	1.88
3246323--3246468	23	6.5	23	80	5	113	23	10	28	37	1.88
3246476--3246548	22	3.3	22	74	0	74	42	16	12	28	1.84
3250726--3250872	73	2.0	73	98	0	285	29	33	12	25	1.92
3251185--3251245	25	2.6	24	84	7	81	32	21	11	34	1.89
3251210--3251283	29	2.7	29	78	12	77	24	24	14	36	1.93
3251685--3251837	82	1.9	79	81	4	180	42	8	9	39	1.67
3252171--3252282	33	3.6	32	81	8	115	46	8	15	30	1.74
3252881--3252983	41	2.7	38	76	7	102	33	16	17	32	1.92
3254085--3254286	69	3.1	66	80	6	230	18	16	11	53	1.72
3260332--3261208	438	2.0	438	94	0	1524	31	15	14	38	1.87
3276280--3276485	113	1.8	114	87	4	308	25	10	26	36	1.89
3277273--3277320	2	25.0	2	87	8	73	50	2	0	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3281088--3281142	28	2.0	28	92	0	92	45	12	1	40	1.53
3281167--3281214	21	2.2	23	88	7	73	25	2	2	70	1.09
3281177--3281219	17	2.7	15	80	13	59	23	0	2	74	0.93
3281682--3281711	16	1.9	15	93	6	51	53	0	0	46	1.00
3282431--3282544	57	2.0	57	93	1	194	38	13	24	23	1.90
3283196--3283220	6	4.2	6	100	0	50	36	0	0	64	0.94
3286165--3286262	50	2.0	50	97	0	187	39	22	23	14	1.90
3288603--3288646	23	2.0	23	86	4	63	34	31	6	27	1.83
3288834--3288882	22	2.2	22	100	0	98	46	26	12	14	1.79
3288658--3289026	188	2.0	188	87	0	540	41	23	12	21	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66