genome.fa.s6.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  14  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4561375--4561417	22	1.9	23	85	4	61	32	16	25	25	1.96
4572709--4572734	12	2.2	12	100	0	52	34	30	0	34	1.58
4581098--4581143	3	15.3	3	90	0	74	65	0	4	30	1.12
4581193--4581235	15	2.7	16	86	13	54	51	9	4	34	1.55
4613129--4613159	16	1.9	16	93	0	53	67	19	0	12	1.22
4613361--4613409	24	2.0	24	100	0	98	42	8	12	36	1.72
4615309--4615386	2	39.0	2	77	0	57	41	5	7	46	1.55
4615309--4615357	18	2.5	20	87	6	66	36	0	12	51	1.40
4616076--4616132	23	2.5	23	75	16	55	47	10	1	40	1.48
4615931--4616186	127	2.0	125	96	1	476	49	10	4	35	1.57
4616195--4616289	23	4.2	22	70	19	52	46	2	4	47	1.33
4616352--4616426	10	7.4	10	74	18	57	53	1	0	45	1.08
4616307--4616400	45	2.1	45	86	4	127	48	5	1	44	1.32
4616375--4616420	18	2.4	19	89	7	67	52	0	0	47	1.00
4616375--4616428	18	2.9	18	81	15	65	51	0	0	48	1.00
4624842--4624883	21	2.0	21	81	9	50	23	26	19	30	1.98
4625421--4625539	37	3.2	37	81	0	139	22	36	10	30	1.89
4637524--4637606	42	2.0	42	90	0	130	21	20	32	25	1.98
4637951--4637992	21	2.0	21	95	0	75	35	23	21	19	1.96
4643159--4643220	27	2.2	28	81	16	76	45	3	3	48	1.34
4643473--4643613	73	1.9	73	84	2	185	38	15	22	23	1.92
4660142--4660183	20	2.1	20	90	0	66	69	7	0	23	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4660147--4660179	15	2.1	16	94	5	59	69	6	0	24	1.10
4719112--4719149	5	7.6	5	90	0	58	0	18	0	81	0.69
4719465--4719555	34	2.7	34	75	0	101	40	24	9	25	1.85
4723545--4723593	25	2.0	25	84	8	64	22	6	10	61	1.50
4724137--4724182	21	2.2	21	92	0	74	43	15	13	28	1.83
4728681--4728735	27	2.0	27	100	0	110	27	10	21	40	1.87
4733586--4733840	102	2.5	103	84	0	314	25	13	23	38	1.91
4737674--4738092	111	3.7	110	81	6	430	18	11	25	44	1.83
4737892--4738146	118	2.2	116	80	3	278	20	11	25	43	1.85
4744172--4744225	21	2.6	21	84	0	72	35	25	18	20	1.95
4744345--4744385	21	2.1	19	86	9	55	68	2	19	9	1.29
4748793--4748844	26	2.0	26	84	0	68	55	11	9	23	1.64
4750874--4750899	13	2.0	13	100	0	52	46	7	0	46	1.31
4753167--4753226	24	2.5	24	83	0	66	20	28	20	31	1.97
4753179--4753289	24	4.8	24	74	6	75	24	27	15	32	1.95
4753248--4753295	24	2.0	24	91	0	78	31	27	10	31	1.90
4756847--4756928	31	2.8	29	80	9	94	51	6	17	25	1.68
4769851--4769896	20	2.4	20	85	7	60	52	0	4	43	1.21
4771710--4771734	13	1.9	13	100	0	50	44	0	8	48	1.32
4781780--4781858	22	3.4	21	67	24	52	39	30	3	26	1.74
4781827--4781979	46	3.3	46	78	9	136	40	23	4	31	1.75
4787299--4787338	21	2.0	21	85	9	57	30	5	20	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4788559--4788658	37	2.7	38	76	14	111	27	33	10	30	1.89
4791787--4791870	39	2.2	38	81	10	98	35	21	23	19	1.96
4793083--4793125	20	2.2	19	87	4	59	44	6	30	18	1.76
4794547--4794630	39	2.2	39	82	0	96	33	15	10	40	1.82
4795258--4795306	22	2.2	22	82	7	55	28	22	20	28	1.98
4795612--4795812	104	2.0	97	88	6	294	22	19	14	43	1.87
4797072--4797270	74	2.7	75	79	5	206	44	17	16	21	1.86
4801407--4801448	21	2.0	21	81	9	50	35	9	11	42	1.74
4802383--4802429	22	2.1	23	84	11	62	27	6	17	48	1.71
4803599--4803626	2	14.0	2	100	0	56	50	0	50	0	1.00
4809115--4809275	36	4.5	35	89	7	218	28	37	12	21	1.90
4809115--4809256	69	2.1	69	90	2	223	29	36	11	21	1.90
4812293--4812347	23	2.3	24	84	6	67	5	32	21	40	1.76
4812455--4812560	34	3.0	34	83	5	131	8	44	2	44	1.49
4812544--4812591	20	2.3	22	79	13	57	0	35	0	64	0.94
4812546--4812676	38	3.7	34	72	21	110	2	35	0	62	1.08
4812562--4812697	38	3.6	37	89	7	195	2	35	0	61	1.11
4812548--4812696	19	8.0	18	67	27	64	2	35	0	61	1.10
4814351--4814506	71	2.2	72	89	4	244	41	17	10	30	1.83
4814473--4814611	71	2.0	71	82	5	174	30	22	12	34	1.92
4815503--4815548	20	2.3	20	88	7	67	26	17	15	41	1.88
4826673--4826779	48	2.2	48	96	0	196	27	15	29	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4826950--4827156	72	2.8	73	80	3	238	23	21	21	32	1.98
4834897--4834935	19	2.0	20	90	5	62	51	0	5	43	1.24
4835264--4835312	19	2.5	20	96	3	91	57	6	0	36	1.24
4839000--4839038	19	2.0	19	85	5	51	15	5	17	61	1.51
4839361--4839385	13	1.9	13	100	0	50	24	12	24	40	1.88
4851702--4851746	15	2.8	17	76	13	58	44	0	11	44	1.39
4858302--4858370	28	2.4	29	81	11	90	24	13	11	50	1.74
4858651--4858804	28	5.5	27	80	4	146	22	19	9	48	1.77
4863399--4863481	36	2.5	34	80	9	91	53	3	0	43	1.18
4863405--4863473	23	2.9	24	75	16	81	55	4	0	40	1.20
4864242--4864399	86	1.8	86	94	0	280	45	8	10	34	1.70
4866782--4866823	2	21.0	2	95	0	75	47	52	0	0	1.00
4868003--4868114	56	2.0	56	98	0	215	33	16	22	27	1.95
4879042--4879090	24	2.0	24	84	8	62	26	22	12	38	1.89
4879461--4879507	15	3.1	15	84	0	58	51	17	2	29	1.57
4880505--4880550	20	2.3	20	96	0	83	28	4	21	45	1.71
4892832--4892884	28	1.9	27	88	3	79	26	18	20	33	1.96
4892929--4892974	20	2.3	20	92	0	74	43	23	4	28	1.73
4895285--4895315	6	5.2	6	100	0	62	48	32	19	0	1.49
4899088--4899133	20	2.3	20	92	0	74	43	23	4	28	1.73
4901679--4901716	20	1.9	20	88	0	58	34	13	13	39	1.83
4901859--4901936	21	3.7	20	80	10	68	46	16	5	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4901992--4902064	21	3.4	22	86	3	105	50	17	5	26	1.68
4901979--4902068	43	2.1	42	85	6	119	51	18	4	25	1.65
4901992--4902077	21	4.0	21	80	5	93	50	17	5	26	1.69
4901859--4902112	140	1.8	139	82	4	314	42	16	7	32	1.77
4902184--4902237	21	2.6	21	75	0	54	46	20	11	22	1.82
4905353--4905451	19	5.1	19	64	9	56	22	17	39	21	1.92
4905349--4905451	38	2.6	40	81	6	131	21	16	39	22	1.92
4909058--4909091	14	2.4	14	100	0	68	55	0	20	23	1.43
4911727--4912478	60	12.5	60	85	3	908	26	32	15	25	1.95
4913718--4913749	2	16.0	2	100	0	64	50	0	0	50	1.00
4916938--4916971	11	3.2	11	95	4	61	32	8	32	26	1.87
4940309--4940346	20	1.9	20	88	0	58	34	7	10	47	1.67
4940911--4941050	52	2.7	52	78	5	158	24	13	11	50	1.74
4943835--4943891	30	2.0	29	82	6	71	47	1	10	40	1.48
4949185--4949285	48	2.1	49	96	1	186	53	6	19	19	1.68
4949554--4949596	18	2.3	19	84	4	52	32	16	6	44	1.74
4953611--4953708	52	1.9	51	85	4	126	47	12	13	26	1.77
4964538--4964643	36	2.9	36	73	9	99	33	24	13	29	1.93
4975783--4975836	23	2.4	22	75	9	56	48	5	35	11	1.62
4979604--4979633	2	15.0	2	100	0	60	50	0	0	50	1.00
4984862--4984955	32	2.8	33	78	10	93	30	31	11	25	1.91
4989683--4989734	27	1.9	27	84	0	68	36	9	21	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4991238--4991298	26	2.3	26	100	0	122	31	40	3	24	1.71
4991308--4991460	43	3.6	42	89	3	216	21	35	18	23	1.95
4993304--4993372	31	2.3	31	97	2	131	34	14	10	40	1.80
4994704--4994844	73	1.9	73	85	5	196	37	21	20	19	1.94
4998613--4998752	73	1.9	72	84	4	183	20	19	22	37	1.94
5009725--5009777	19	2.9	19	73	15	58	60	7	0	32	1.25
5010287--5010338	2	27.5	2	81	11	65	50	0	0	50	1.00
5016281--5016314	17	1.9	18	88	5	52	35	0	8	55	1.31
5016894--5016942	25	2.0	25	83	0	62	42	18	6	32	1.75
5017261--5017320	28	2.1	28	87	0	84	36	10	6	46	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66