genome.fa.s6.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  37  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12944236--12944267	9	3.6	9	91	0	55	9	3	21	65	1.35
12946593--12946632	19	2.2	19	95	4	73	52	0	5	42	1.23
12947461--12947523	19	3.0	21	72	25	60	66	0	31	1	1.01
12952591--12952760	36	4.8	36	80	11	201	28	10	24	37	1.87
12952627--12952777	68	2.2	68	98	0	293	27	9	23	39	1.86
12958087--12958150	27	2.3	28	84	12	80	26	0	4	68	1.09
12982554--12982672	51	2.4	51	79	1	141	42	11	21	24	1.86
12984516--12984564	26	1.9	25	84	12	64	12	8	14	65	1.47
12987234--12987282	26	1.9	25	88	12	73	63	14	10	12	1.53
12992990--12993119	36	3.6	36	75	4	118	36	18	11	33	1.87
12994229--12994287	31	1.9	31	89	0	91	23	16	13	45	1.83
12999721--12999851	42	3.1	41	90	4	199	25	31	20	22	1.98
13014806--13014861	8	7.0	8	74	13	53	48	0	0	51	1.00
13017284--13017326	22	2.0	22	90	0	68	37	20	9	32	1.85
13022081--13022126	19	2.4	19	89	7	67	41	2	0	56	1.11
13022990--13023056	33	2.0	33	88	5	100	47	8	13	29	1.73
13025974--13026000	5	5.4	5	100	0	54	0	22	0	77	0.76
13029624--13029656	2	16.5	2	100	0	66	48	0	0	51	1.00
13038431--13038777	169	2.1	169	90	3	547	23	19	11	45	1.83
13040959--13041010	23	2.3	23	100	0	104	25	13	26	34	1.93
13050769--13050796	2	14.0	2	100	0	56	50	0	0	50	1.00
13051212--13051296	22	3.9	22	77	0	80	23	4	22	49	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13051210--13051296	44	2.0	44	82	8	106	24	4	21	49	1.68
13051621--13051662	18	2.2	20	83	8	52	52	23	4	19	1.65
13060855--13060881	13	2.1	13	100	0	54	44	14	0	40	1.46
13064852--13064952	51	2.0	51	82	7	125	31	13	9	44	1.77
13066254--13066308	28	1.9	29	85	3	76	63	1	3	30	1.22
13067491--13067556	24	2.8	24	97	0	123	43	16	30	9	1.79
13070268--13070305	19	2.0	19	89	0	58	31	0	21	47	1.51
13070273--13070311	19	2.1	19	85	0	51	25	0	28	46	1.53
13085387--13085446	29	2.1	28	81	9	68	38	1	3	56	1.26
13086062--13086139	22	3.6	22	70	19	65	41	5	0	53	1.23
13086594--13086696	27	4.0	27	66	17	74	45	1	3	48	1.32
13086846--13086877	16	2.0	16	93	0	55	53	0	0	46	1.00
13097580--13097622	2	21.5	2	100	0	86	48	0	0	51	1.00
13102628--13102695	35	1.9	36	84	3	93	30	35	14	19	1.92
13102678--13102782	53	2.0	52	96	1	192	32	32	14	20	1.93
13106468--13106652	73	2.5	73	82	1	201	22	20	17	39	1.92
13109588--13109618	2	15.5	2	100	0	62	51	0	0	48	1.00
13109634--13109776	40	3.4	42	86	4	191	23	32	18	24	1.97
13114127--13114151	6	4.2	6	100	0	50	64	0	0	36	0.94
13132039--13132086	25	1.9	25	83	8	62	43	0	20	35	1.52
13137700--13137899	67	3.0	67	86	3	269	34	25	14	26	1.94
13138931--13138957	13	2.1	13	100	0	54	44	7	0	48	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13141852--13141939	39	2.3	39	84	7	108	23	21	22	31	1.98
13144281--13144631	176	2.0	175	94	0	603	25	19	18	35	1.95
13154308--13154428	42	2.9	42	89	0	197	20	32	23	23	1.98
13157206--13157267	30	2.1	30	96	0	115	30	27	20	20	1.98
13157584--13157686	43	2.4	43	85	3	136	18	37	18	25	1.93
13160908--13160963	26	2.2	26	93	0	94	35	7	21	35	1.81
13164679--13164724	20	2.3	20	96	0	83	45	21	4	28	1.71
13171481--13171517	19	1.9	19	88	0	56	21	29	24	24	1.99
13171666--13171757	39	2.4	39	88	0	139	36	23	17	21	1.94
13172163--13172257	43	2.2	43	86	3	129	18	33	21	26	1.96
13172369--13172529	81	2.0	80	97	2	297	38	14	13	32	1.86
13174095--13174143	23	2.1	23	96	0	89	34	18	10	36	1.85
13178516--13178579	31	2.1	31	91	2	103	46	7	14	31	1.72
13183023--13183052	2	15.0	2	100	0	60	50	0	0	50	1.00
13185139--13185209	33	2.2	33	92	0	115	39	21	7	32	1.80
13190402--13190520	43	2.8	43	89	2	177	21	21	37	19	1.94
13190412--13190533	43	2.8	43	88	2	174	22	18	39	18	1.92
13190519--13190581	20	3.2	19	88	2	90	25	4	41	28	1.75
13193329--13193489	76	2.1	74	86	2	223	39	11	7	40	1.70
13195941--13196077	42	3.3	42	83	0	175	24	28	21	24	1.99
13197623--13197661	20	1.9	20	89	5	60	41	12	0	46	1.42
13199982--13200014	17	1.9	17	100	0	66	21	36	12	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13200249--13200309	24	2.5	24	97	0	113	50	19	4	24	1.67
13207597--13207720	43	2.9	43	82	2	151	24	16	37	21	1.94
13208051--13208215	60	2.8	60	83	5	192	27	18	23	30	1.98
13216741--13216935	49	4.0	49	79	4	187	35	23	12	28	1.92
13216739--13216920	98	1.9	98	81	4	224	35	23	13	28	1.92
13218824--13218905	43	1.9	43	92	0	137	28	17	32	21	1.96
13218942--13218994	22	2.3	23	96	3	99	22	3	43	30	1.71
13225028--13225283	68	3.8	68	91	0	413	32	19	9	38	1.83
13230684--13230961	92	3.0	92	82	5	339	35	18	9	37	1.83
13237296--13237368	33	2.1	35	87	5	105	21	15	30	32	1.94
13239790--13239911	37	3.3	37	86	2	165	23	37	10	27	1.88
13264690--13264813	43	2.9	43	86	3	162	24	34	16	25	1.95
13268452--13268485	18	1.9	17	88	5	50	38	14	8	38	1.78
13275047--13275120	35	2.1	36	85	7	98	32	18	14	33	1.92
13277210--13277265	27	2.1	27	96	0	103	5	25	19	50	1.69
13277252--13277297	5	9.6	5	86	13	62	0	19	2	78	0.86
13277457--13277537	34	2.3	35	83	6	112	37	28	9	24	1.87
13277646--13277691	22	2.1	22	87	0	65	47	28	10	13	1.76
13282729--13282790	25	2.5	24	84	10	63	20	20	9	48	1.78
13282882--13282937	22	2.5	22	88	0	85	12	42	12	32	1.80
13283086--13283135	23	2.2	23	92	0	82	38	26	4	32	1.75
13283560--13283604	19	2.5	18	86	10	65	4	15	6	73	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13292438--13292480	21	2.0	22	86	4	61	39	20	4	34	1.74
13294555--13294596	5	8.6	5	85	15	61	0	19	2	78	0.86
13294740--13294819	34	2.4	33	83	10	92	30	27	13	28	1.94
13294760--13294840	34	2.4	34	87	6	119	33	30	11	24	1.90
13294949--13294995	22	2.1	22	88	0	67	42	29	14	12	1.83
13295365--13295413	19	2.5	20	83	12	57	32	6	0	61	1.21
13295753--13295793	19	2.2	19	90	0	64	43	2	0	53	1.13
13297085--13297109	13	1.9	13	100	0	50	48	0	0	52	1.00
13299451--13299485	2	17.5	2	100	0	70	51	48	0	0	1.00
13299485--13299523	2	19.5	2	89	0	60	48	0	2	48	1.15
13303349--13303396	23	2.1	23	100	0	96	52	8	18	20	1.71
13306092--13306130	21	1.9	20	89	5	60	41	15	17	25	1.89
13307604--13307656	19	2.8	18	81	16	63	69	5	24	0	1.09
13308650--13308682	16	2.1	16	100	0	66	30	24	27	18	1.98
13314096--13314131	18	2.0	18	89	10	56	47	2	33	16	1.61
13316916--13317080	54	3.1	56	72	18	154	3	41	3	50	1.37
13316946--13317088	54	2.7	52	79	9	173	4	41	3	51	1.38
13317176--13317242	14	4.8	14	75	15	59	0	25	0	74	0.82
13317176--13317241	10	6.4	10	74	11	53	0	25	0	74	0.82
13317400--13317451	16	3.3	15	78	10	52	26	3	0	69	1.06
13317809--13317851	19	2.3	18	88	4	68	44	4	0	51	1.22
13321095--13321142	25	1.9	25	91	0	78	14	29	14	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13321153--13321266	51	2.2	52	86	9	155	0	40	5	53	1.29
13321243--13321280	15	2.4	16	91	4	60	0	34	0	65	0.93
13321176--13321274	49	2.0	49	86	7	139	0	43	6	50	1.27
13321203--13321327	64	2.0	60	82	11	146	3	39	3	54	1.33
13321440--13321497	10	5.8	10	73	20	50	0	27	0	72	0.85
13322064--13322106	19	2.3	18	88	4	68	44	4	0	51	1.22
13322541--13322751	73	2.9	73	91	0	341	38	17	22	21	1.93
13324901--13324945	23	2.0	23	95	0	81	55	11	8	24	1.63
13326468--13326599	28	4.5	28	75	7	120	40	14	8	37	1.76
13326469--13326578	59	1.9	57	83	7	141	37	13	9	40	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66