genome.fa.s6.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  59  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22226876--22226924	20	2.5	20	93	0	80	48	2	10	38	1.48
22244011--22244046	2	18.0	2	100	0	72	50	0	0	50	1.00
22253190--22253218	4	7.2	4	100	0	58	24	24	0	51	1.48
22254425--22254457	2	16.5	2	93	0	57	48	0	0	51	1.00
22258144--22258169	4	6.5	4	100	0	52	53	0	0	46	1.00
22270599--22270641	14	2.9	14	83	16	52	27	0	4	67	1.10
22287419--22287489	27	2.6	27	95	0	124	49	2	4	43	1.36
22288012--22288086	37	2.0	37	97	0	141	24	21	17	37	1.94
22292262--22292311	21	2.3	22	79	6	57	30	10	18	42	1.82
22292216--22292311	43	2.2	44	80	9	108	27	9	20	42	1.83
22292290--22292496	26	8.5	25	76	9	128	27	11	24	36	1.89
22292314--22292406	48	1.9	48	91	0	150	29	11	23	35	1.90
22292290--22292450	74	2.2	74	85	2	207	27	12	23	36	1.91
22292530--22292586	21	2.6	22	80	5	80	45	21	10	22	1.82
22293260--22293297	19	2.0	20	89	5	60	65	2	2	28	1.19
22293934--22293987	2	27.0	2	100	0	108	50	0	0	50	1.00
22315580--22315635	21	2.7	21	88	0	76	33	51	7	7	1.56
22318094--22318124	2	15.5	2	100	0	62	51	0	48	0	1.00
22320039--22320340	151	2.0	151	91	0	487	33	14	16	35	1.90
22356036--22356068	13	2.4	14	95	5	59	60	0	0	39	0.97
22363312--22363358	3	15.7	3	90	0	76	65	0	31	2	1.04
22378282--22378355	26	3.0	24	82	7	85	47	16	9	27	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22382675--22382717	20	2.2	20	95	0	77	18	34	4	41	1.71
22382682--22382728	20	2.2	20	88	7	67	14	36	2	46	1.57
22384281--22384328	18	2.7	18	86	0	60	60	2	4	33	1.27
22384335--22384521	98	1.9	96	82	6	234	32	10	11	45	1.74
22384583--22384608	12	2.2	12	100	0	52	69	7	0	23	1.14
22402171--22402234	26	2.5	26	92	0	110	25	42	4	28	1.75
22403970--22404261	159	1.8	158	93	0	503	27	12	21	38	1.90
22409568--22409660	29	3.2	29	82	10	111	39	8	9	41	1.69
22409691--22409740	26	1.9	27	84	8	68	32	16	10	42	1.81
22409678--22409939	81	3.2	81	80	5	235	31	10	13	45	1.77
22409772--22409821	26	1.9	26	88	8	75	26	10	16	48	1.77
22409766--22409827	26	2.4	25	79	10	72	25	8	14	51	1.69
22410998--22411038	10	4.0	10	83	3	55	39	2	0	58	1.11
22411598--22411767	79	2.1	83	80	6	188	30	11	14	43	1.81
22418737--22418781	22	2.1	23	84	12	60	60	11	2	26	1.42
22420830--22420901	2	37.0	2	89	10	114	47	0	0	51	1.00
22426920--22426953	17	2.0	17	88	0	50	50	2	0	47	1.16
22426919--22427007	43	2.0	45	82	8	112	51	1	2	44	1.21
22426956--22426990	15	2.2	15	90	10	52	57	0	0	42	0.99
22427335--22427429	26	3.7	25	75	20	72	58	1	2	37	1.17
22427343--22427415	23	3.0	24	78	13	78	57	1	1	39	1.16
22427262--22427539	42	6.3	42	67	18	122	56	2	2	39	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22427346--22427429	27	3.3	26	80	15	88	60	1	1	36	1.12
22427488--22427550	22	2.9	21	80	15	58	65	1	1	31	1.12
22427678--22427710	16	2.1	16	94	0	57	18	3	0	78	0.87
22434307--22434340	3	11.0	3	93	6	59	35	0	0	64	0.94
22435668--22435731	32	2.0	31	81	3	74	28	14	23	34	1.93
22436568--22436613	23	2.0	23	86	0	65	41	13	6	39	1.70
22439944--22439989	23	2.0	23	91	0	74	39	13	8	39	1.75
22440761--22440830	33	2.3	28	72	21	68	65	1	2	30	1.15
22440734--22440820	33	2.6	33	87	1	111	66	0	2	31	1.04
22444221--22444261	15	2.5	17	84	15	59	43	0	0	56	0.99
22444336--22444389	24	2.2	24	93	0	90	59	0	0	40	0.98
22447504--22447540	15	2.3	17	81	13	51	37	2	2	56	1.28
22447523--22447618	36	2.6	36	83	15	117	40	0	2	56	1.11
22447791--22447819	14	2.1	14	93	6	51	44	6	0	48	1.29
22448730--22448775	2	23.5	2	95	4	85	0	47	0	52	1.00
22458878--22458931	26	2.1	26	96	0	99	33	35	11	20	1.88
22470884--22470920	2	18.5	2	100	0	74	0	51	0	48	1.00
22472581--22472625	24	1.9	23	86	13	65	51	0	0	48	1.00
22473884--22473908	2	12.5	2	100	0	50	48	0	0	52	1.00
22487049--22487095	23	2.1	21	84	7	58	36	2	0	61	1.08
22488152--22488256	53	2.0	53	98	0	201	22	24	31	20	1.98
22531424--22531455	15	2.1	15	100	0	64	46	6	0	46	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22538886--22538920	5	7.0	5	93	0	61	0	22	0	77	0.78
22540011--22540050	20	2.0	20	95	0	71	20	27	10	42	1.83
22540225--22540288	20	3.2	20	86	6	78	18	18	10	51	1.75
22540401--22540623	118	1.9	120	82	2	288	24	14	16	44	1.85
22540538--22540704	79	2.1	79	85	2	219	27	13	13	46	1.80
22540563--22540746	79	2.3	77	80	5	190	27	16	11	44	1.82
22555935--22556072	70	2.0	68	95	1	240	25	28	19	25	1.98
22557118--22557159	22	1.9	22	95	0	75	38	16	11	33	1.86
22604558--22604600	18	2.3	19	84	8	52	9	0	18	72	1.11
22616531--22616626	11	9.0	11	72	15	60	46	4	0	48	1.21
22616912--22616955	22	2.0	23	90	4	72	50	0	0	50	1.00
22616907--22616962	22	2.6	21	78	13	60	42	1	0	55	1.10
22621450--22621482	17	2.1	17	88	11	52	48	3	36	12	1.56
22624207--22624235	2	14.5	2	100	0	58	51	0	0	48	1.00
22626874--22626911	18	2.0	20	90	10	62	78	15	5	0	0.91
22630747--22630980	116	2.0	117	94	0	416	50	9	6	34	1.60
22630973--22631025	27	1.9	28	85	11	74	32	1	0	66	1.03
22630950--22631040	27	3.3	27	75	14	71	40	1	1	57	1.13
22631248--22631314	32	2.2	30	86	10	91	56	4	2	35	1.35
22650526--22650653	63	2.0	63	95	0	229	19	17	15	47	1.82
22652242--22652272	16	2.0	15	93	6	53	64	0	25	9	1.24
22658597--22658677	2	44.0	2	81	16	95	53	0	45	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22660520--22660710	66	2.9	66	87	3	260	32	14	20	31	1.93
22660625--22660665	21	2.0	21	90	0	64	21	14	24	39	1.91
22660641--22660841	90	2.2	90	87	1	278	36	14	17	30	1.91
22660641--22660841	45	4.5	45	85	0	249	36	14	17	30	1.91
22660974--22661040	31	2.2	31	91	0	107	40	11	13	34	1.81
22661050--22661098	26	1.9	26	83	4	64	38	12	18	30	1.87
22660962--22661111	31	5.3	28	76	15	100	39	13	14	32	1.85
22661074--22661130	29	2.0	28	82	3	69	36	12	14	36	1.83
22675280--22675315	3	12.0	3	93	0	63	33	2	33	30	1.72
22685559--22685585	2	13.5	2	100	0	54	0	48	0	51	1.00
22686514--22686588	33	2.3	33	86	4	98	41	10	4	44	1.58
22686648--22686754	29	3.7	28	74	9	81	58	2	1	36	1.23
22686699--22686767	29	2.4	29	85	2	86	63	0	0	36	0.94
22701570--22701615	16	2.9	16	93	3	76	47	0	0	52	1.00
22701577--22701644	27	2.5	28	73	9	77	48	0	0	51	1.00
22702011--22702089	22	3.4	22	77	16	86	58	0	1	40	1.06
22702029--22702080	27	1.9	27	92	7	88	57	0	1	40	1.10
22701912--22702127	118	1.8	116	90	5	339	59	1	1	37	1.17
22702001--22702265	131	2.0	129	86	5	365	55	2	2	39	1.28
22702207--22702238	16	2.1	16	94	5	57	65	0	0	34	0.93
22704033--22704057	3	8.3	3	100	0	50	32	0	0	68	0.90
22728071--22728212	76	1.9	76	92	0	239	26	16	23	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22733007--22733056	22	2.3	21	80	10	55	48	6	0	46	1.27
22742745--22742798	25	2.2	25	82	0	63	37	1	9	51	1.45
22749460--22749509	2	25.0	2	100	0	100	50	0	0	50	1.00
22769128--22769288	80	2.0	81	91	1	261	37	17	13	31	1.89
22798442--22798475	16	2.0	18	88	11	54	23	0	8	67	1.18
22815202--22815276	30	2.5	30	100	0	150	46	4	38	10	1.57
22826745--22826791	24	2.0	24	84	16	62	23	21	8	46	1.78
22831558--22831600	22	2.0	22	95	0	77	39	20	11	27	1.88
22837886--22837924	21	1.9	20	84	5	51	56	2	33	7	1.41
22838879--22839040	80	2.0	80	100	0	324	32	17	24	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66