genome.fa.s6.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  34  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11700543--11700578	19	2.0	18	89	10	56	72	11	2	13	1.23
11705299--11705349	26	1.9	28	84	11	72	74	3	1	19	1.07
11705354--11705396	16	2.7	16	82	10	52	62	11	0	25	1.29
11705772--11705841	28	2.4	29	78	7	79	38	7	10	44	1.65
11706171--11706353	98	1.9	97	100	0	357	23	18	19	38	1.93
11707415--11707463	20	2.6	20	84	12	68	61	0	2	36	1.08
11707415--11707458	18	2.5	17	82	10	54	63	0	2	34	1.07
11712911--11712985	15	5.0	15	74	11	73	68	1	29	1	1.06
11712905--11712985	30	2.7	30	81	7	101	67	1	28	2	1.11
11714007--11714036	15	1.9	16	93	6	53	33	6	16	43	1.74
11714774--11714858	42	2.0	42	95	0	152	25	18	9	45	1.79
11717322--11717462	38	3.6	37	83	9	167	21	17	37	23	1.94
11723343--11723384	22	2.0	22	86	13	61	30	11	28	28	1.92
11727633--11727773	38	3.7	38	84	3	167	21	15	38	24	1.92
11727893--11728133	121	2.0	120	96	1	439	26	22	18	31	1.97
11733863--11733902	19	2.2	19	90	4	64	52	5	5	37	1.45
11734491--11734540	11	4.9	11	79	18	63	66	8	26	0	1.19
11734731--11734922	92	2.1	92	88	5	282	21	11	30	36	1.89
11735356--11735388	16	1.9	18	88	11	52	30	3	24	42	1.70
11745660--11745701	20	2.2	19	84	16	52	30	2	26	40	1.69
11745700--11745953	43	5.8	42	78	7	229	26	16	35	22	1.95
11745697--11745953	89	2.9	91	84	3	233	26	15	35	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11751655--11751748	46	2.0	46	97	0	179	53	9	4	32	1.53
11753783--11753842	28	2.1	30	84	6	79	38	21	10	30	1.86
11764369--11764500	43	3.2	43	89	4	200	25	37	15	22	1.93
11776235--11776270	15	2.4	14	90	9	54	0	19	0	80	0.71
11776234--11776279	20	2.4	19	81	3	65	0	26	0	73	0.83
11776546--11776651	35	3.0	35	76	0	113	41	30	6	21	1.79
11782940--11783053	35	3.3	35	71	4	86	36	29	9	23	1.87
11783277--11783301	12	2.1	12	100	0	50	40	0	0	60	0.97
11787183--11787244	22	2.8	23	80	9	85	25	19	20	33	1.96
11787536--11787620	43	2.0	43	92	0	143	24	32	18	23	1.97
11790722--11790981	68	3.8	68	86	2	333	35	19	8	35	1.83
11794579--11794611	2	16.5	2	93	0	57	51	3	0	45	1.16
11794977--11795057	34	2.3	35	87	6	121	28	11	27	33	1.91
11794981--11795085	34	3.1	33	81	12	106	28	12	27	31	1.93
11796328--11796357	2	15.0	2	100	0	60	50	0	0	50	1.00
11797449--11797478	11	2.7	11	94	0	51	30	0	23	46	1.52
11801121--11801160	19	2.2	18	86	13	55	57	0	0	42	0.98
11802117--11802190	34	2.1	35	87	7	107	35	10	21	32	1.88
11802349--11802419	5	14.6	5	89	7	87	76	2	21	0	0.92
11802346--11802397	4	11.5	4	88	11	50	76	0	23	0	0.78
11802406--11802470	27	2.4	27	92	2	105	53	15	23	7	1.67
11808645--11808685	21	1.9	22	85	5	57	65	9	9	14	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11821167--11821204	20	1.9	20	88	0	58	34	5	28	31	1.80
11823681--11823784	38	2.7	39	90	4	165	22	38	17	22	1.93
11832640--11832847	80	2.6	80	81	4	258	33	25	9	32	1.87
11836756--11836827	37	1.9	37	97	0	135	27	16	16	38	1.90
11838141--11838328	34	5.2	34	64	18	85	22	13	34	30	1.92
11838135--11838370	73	3.2	73	87	0	310	22	13	33	29	1.93
11838174--11838367	39	5.2	39	65	18	126	23	14	33	28	1.94
11840768--11840810	2	21.5	2	95	0	77	46	0	2	51	1.13
11841215--11841298	22	3.5	23	77	11	80	47	1	2	48	1.22
11841452--11841755	109	2.8	111	82	7	363	39	0	4	55	1.24
11841471--11841625	27	5.7	27	68	23	101	42	0	4	52	1.26
11848873--11848995	43	2.9	43	87	3	169	26	18	32	22	1.97
11852118--11852166	2	24.5	2	100	0	98	48	0	0	51	1.00
11860108--11860199	39	2.4	39	86	0	130	21	19	25	33	1.97
11865877--11865901	11	2.3	11	100	0	50	28	0	0	72	0.86
11866406--11866589	77	2.5	69	75	15	181	38	11	8	41	1.73
11866452--11866617	77	2.2	77	88	2	244	39	12	7	40	1.71
11871909--11871946	19	2.0	19	89	0	58	28	2	28	39	1.70
11880436--11880472	16	2.4	16	95	4	67	18	10	21	48	1.78
11883313--11883365	20	2.7	20	80	11	63	26	28	9	35	1.87
11884142--11884166	7	3.6	7	100	0	50	36	0	32	32	1.58
11884319--11884390	35	2.1	35	100	0	144	19	13	37	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11884361--11884464	54	1.9	54	94	0	181	20	12	40	26	1.88
11895801--11895873	21	3.5	21	75	0	83	50	2	1	45	1.24
11901036--11901083	24	2.0	24	95	0	87	33	14	18	33	1.91
11901803--11901970	87	1.9	87	93	0	291	30	26	13	29	1.94
11917851--11918012	73	2.2	73	80	8	179	20	17	20	41	1.90
11938761--11938820	31	1.9	31	86	0	84	26	28	20	25	1.99
11939449--11939577	65	2.0	65	93	0	222	41	9	19	29	1.82
11943006--11943043	2	19.0	2	100	0	76	50	0	0	50	1.00
11943247--11943453	111	1.9	110	95	2	371	39	14	17	28	1.89
11947182--11947233	22	2.4	22	86	0	68	25	19	25	30	1.98
11947469--11947631	37	4.4	37	80	5	188	25	35	9	29	1.87
11950930--11950958	14	2.0	15	93	6	51	41	0	6	51	1.28
11951789--11951825	18	2.0	19	94	5	67	45	0	0	54	1.00
11951783--11951845	5	11.6	5	77	12	54	44	0	0	55	0.99
11951783--11951844	15	3.8	16	77	12	63	45	0	0	54	0.99
11956645--11956769	42	3.0	42	93	0	214	19	24	35	21	1.96
11956810--11956854	2	22.0	2	90	4	63	48	4	2	44	1.35
11958021--11958060	18	2.2	18	95	0	71	10	2	27	60	1.42
11958503--11958546	20	2.1	21	87	4	63	27	2	29	40	1.68
11958539--11958694	37	4.2	37	83	3	206	28	7	35	27	1.85
11958740--11958766	2	13.5	2	100	0	54	48	0	0	51	1.00
11964923--11965005	42	2.0	42	95	0	148	20	21	34	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11965240--11965301	26	2.4	26	94	0	106	24	3	40	32	1.71
11970929--11970964	2	18.0	2	88	0	54	50	2	2	44	1.31
11971378--11971425	19	2.5	19	89	0	78	43	35	8	12	1.73
11975036--11975076	20	2.0	20	95	0	73	46	4	26	21	1.72
11975649--11975759	43	2.6	43	85	2	152	25	18	35	20	1.96
11983466--11983772	153	2.0	152	98	1	589	36	27	8	28	1.85
11986808--11987060	139	1.8	137	92	0	416	45	9	9	34	1.70
12015521--12015559	21	1.9	21	89	5	62	61	5	7	25	1.44
12019485--12019540	26	2.2	26	96	0	103	33	25	14	26	1.94
12029228--12029789	281	2.0	280	98	0	1097	29	24	7	38	1.83
12030540--12030590	15	3.4	14	84	10	66	49	15	3	31	1.63
12036999--12037037	20	2.0	20	84	0	51	35	10	25	28	1.89
12037061--12037260	73	2.7	73	81	6	201	42	16	18	23	1.89
12037648--12037748	32	3.0	33	76	8	114	22	15	25	35	1.94
12037648--12037822	67	2.6	68	87	2	239	27	14	25	33	1.94
12037648--12037796	35	4.5	32	72	12	120	24	14	26	34	1.93
12038725--12038758	11	3.0	12	91	8	54	61	14	23	0	1.33
12038726--12038770	19	2.2	19	84	11	54	66	11	22	0	1.22
12048212--12048302	46	2.0	45	97	0	164	40	2	12	43	1.54
12058348--12058396	24	2.0	24	96	0	89	44	24	10	20	1.82
12071030--12071073	20	2.1	21	87	4	63	31	2	25	40	1.68
12071070--12071235	42	3.9	42	80	5	192	24	19	33	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12071071--12071235	84	2.0	85	84	6	219	24	19	33	23	1.97
12076689--12076746	27	2.1	27	90	0	89	43	12	17	27	1.84
12084145--12084290	76	1.9	75	80	5	168	41	9	14	34	1.78
12084794--12084851	28	2.0	30	83	12	77	43	6	22	27	1.79
12088454--12088513	28	2.1	30	84	6	79	40	23	5	31	1.76
12089276--12089741	49	9.5	49	77	3	353	28	8	25	37	1.85
12089277--12089750	98	4.8	98	78	4	427	28	9	24	37	1.86
12089279--12089800	147	3.5	144	76	5	449	27	9	24	37	1.87
12089270--12089800	49	10.8	49	76	4	309	27	9	24	37	1.87
12092169--12092295	68	1.9	68	85	3	175	24	18	29	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66