genome.fa.s6.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  35  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12092930--12092989	30	2.0	30	90	6	95	40	0	26	33	1.57
12094435--12095113	49	13.9	48	75	5	495	27	10	24	37	1.88
12094388--12095131	98	7.6	98	76	6	576	27	10	24	37	1.89
12094388--12095131	147	5.1	147	76	5	619	27	10	24	37	1.89
12112045--12112148	54	1.9	54	90	0	163	24	39	14	22	1.91
12115615--12115783	36	4.7	37	73	17	133	20	13	37	28	1.90
12119908--12119978	35	2.0	35	86	10	101	35	28	7	29	1.83
12120918--12120952	17	2.1	17	94	0	61	8	40	22	28	1.84
12127103--12127276	63	2.8	63	86	0	240	25	16	31	27	1.96
12137908--12137959	28	1.9	27	84	7	70	26	15	19	38	1.91
12141613--12141715	38	2.7	37	80	10	118	25	38	14	21	1.91
12143009--12143047	18	2.2	18	100	0	78	33	0	30	35	1.58
12150319--12150362	22	2.0	22	100	0	88	40	18	13	27	1.88
12152584--12152628	11	4.3	11	81	15	51	0	22	11	66	1.22
12152596--12152629	11	3.0	12	91	8	54	0	23	14	61	1.33
12161972--12162019	25	1.9	24	87	8	69	43	12	10	33	1.77
12165485--12165605	43	2.8	43	80	6	131	24	19	36	19	1.95
12170068--12170105	19	2.0	19	94	0	67	42	28	0	28	1.56
12176562--12176597	2	18.5	2	94	5	65	50	0	0	50	1.00
12181383--12181466	42	2.0	42	90	0	132	22	21	35	20	1.96
12181507--12181547	2	20.5	2	100	0	82	51	0	0	48	1.00
12185941--12185996	25	2.3	25	87	3	78	19	26	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12187216--12187300	4	22.8	4	72	13	65	0	34	0	65	0.93
12187209--12187300	7	12.4	7	81	5	76	1	33	0	65	1.00
12188507--12188532	2	13.0	2	100	0	52	50	0	50	0	1.00
12189081--12189130	2	24.5	2	91	4	82	48	0	2	48	1.13
12189236--12189401	54	3.1	54	91	1	271	19	13	39	27	1.90
12193851--12193994	63	2.3	63	83	0	171	26	16	30	26	1.97
12201450--12201611	63	2.6	63	88	3	236	23	18	33	24	1.97
12205884--12206004	37	3.3	37	87	2	172	29	9	35	24	1.88
12209699--12209738	14	2.9	14	84	0	62	37	5	20	37	1.74
12210616--12210691	40	1.9	40	86	0	107	36	28	14	19	1.91
12212771--12212830	25	2.4	25	78	10	68	20	35	18	26	1.95
12215937--12216102	42	4.0	42	85	4	219	22	21	32	24	1.98
12219709--12219793	37	2.3	38	89	4	138	27	10	38	23	1.87
12225171--12225230	20	3.1	20	88	4	88	31	38	3	26	1.73
12225229--12225338	43	2.6	43	88	2	150	20	37	19	23	1.94
12227399--12227471	37	2.0	37	88	0	110	31	10	35	21	1.88
12227414--12227508	37	2.6	37	86	3	120	25	13	36	24	1.92
12231061--12231156	36	2.6	36	91	1	147	20	39	16	22	1.92
12232872--12232930	25	2.2	28	82	11	70	27	28	18	25	1.98
12234889--12234994	56	1.9	56	92	1	178	30	26	10	33	1.90
12234892--12235008	55	2.1	54	85	6	155	30	27	8	33	1.87
12235901--12235931	11	2.8	11	100	0	62	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12238664--12238782	43	2.8	43	89	2	177	21	21	37	19	1.94
12238674--12238795	43	2.8	43	88	2	174	22	18	39	18	1.92
12238781--12238843	20	3.2	20	90	2	101	25	3	41	30	1.71
12250130--12250167	20	1.9	20	88	0	58	47	10	26	15	1.78
12255360--12255473	37	3.1	37	86	5	167	26	37	8	27	1.86
12257116--12257233	42	2.8	42	85	2	166	24	21	31	22	1.98
12264216--12264443	31	7.4	31	82	3	228	23	18	18	39	1.92
12266090--12266138	16	3.3	15	80	16	57	40	12	2	44	1.53
12266228--12266395	31	5.4	31	74	8	162	23	33	17	25	1.96
12266204--12266390	62	3.0	62	90	0	284	25	33	16	25	1.96
12266389--12266783	31	12.7	31	79	9	314	25	15	24	34	1.95
12266389--12266779	93	4.2	92	81	9	379	25	15	24	34	1.95
12266433--12266769	156	2.2	155	90	2	514	26	15	23	33	1.95
12266433--12266769	62	5.4	63	88	2	395	26	15	23	33	1.95
12270298--12270374	23	3.3	23	88	0	109	25	29	20	23	1.99
12270331--12270382	23	2.4	21	84	9	61	26	30	17	25	1.97
12270410--12270635	55	4.1	56	84	3	253	41	32	13	12	1.82
12271386--12271467	41	2.0	41	95	0	146	46	14	6	32	1.69
12272319--12272343	12	2.1	12	100	0	50	52	16	8	24	1.70
12274930--12274964	2	17.5	2	93	0	61	45	0	2	51	1.16
12276262--12276304	7	6.1	7	100	0	86	44	55	0	0	0.99
12287178--12287262	35	2.4	35	84	7	118	28	22	15	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12289477--12289658	47	3.9	46	83	7	215	51	10	10	27	1.70
12289484--12289554	23	3.0	23	68	11	63	59	5	8	26	1.49
12289477--12289656	94	1.9	93	84	8	240	51	10	10	27	1.69
12292021--12292069	21	2.4	20	82	3	53	38	16	16	28	1.90
12298868--12299024	70	2.2	69	81	6	174	33	18	22	26	1.97
12301232--12301274	15	2.6	17	82	17	56	51	6	0	41	1.29
12301511--12301555	17	2.8	17	86	6	67	51	4	0	44	1.21
12301570--12301612	15	2.7	16	82	17	54	53	4	0	41	1.21
12310672--12310696	13	1.9	13	100	0	50	48	8	0	44	1.32
12312069--12312106	19	2.0	19	94	0	67	42	28	0	28	1.56
12315748--12315785	12	3.2	12	92	0	58	2	23	5	68	1.23
12315742--12315800	24	2.5	24	76	15	59	1	25	5	67	1.20
12316264--12316305	21	2.0	21	85	0	57	21	23	16	38	1.93
12321396--12321462	11	6.2	11	94	1	118	26	32	8	31	1.87
12324183--12324225	21	2.0	21	82	8	52	27	20	18	32	1.96
12325296--12325355	25	2.4	25	88	5	86	26	31	16	25	1.96
12328206--12328256	21	2.4	21	78	18	61	52	5	27	13	1.63
12332538--12332569	2	16.0	2	93	0	55	46	0	0	53	1.00
12332621--12332787	37	4.6	37	90	6	261	28	11	35	23	1.90
12332622--12332787	73	2.3	74	95	3	309	28	12	35	23	1.91
12382721--12382760	19	2.0	20	95	4	73	42	27	0	30	1.56
12395773--12395809	4	9.5	4	83	16	51	75	2	0	21	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12395776--12395802	14	1.9	14	100	0	54	77	0	0	22	0.76
12395773--12395811	18	2.1	19	95	4	71	76	2	0	20	0.90
12398953--12399055	38	2.7	38	89	3	143	21	17	38	22	1.93
12411204--12411259	2	28.0	2	100	0	112	50	0	0	50	1.00
12422295--12422344	23	2.1	24	82	10	59	52	4	24	20	1.63
12423354--12423511	83	1.9	85	88	5	241	23	17	34	24	1.96
12423352--12423527	42	4.2	42	86	5	239	25	17	33	24	1.96
12423862--12423952	40	2.3	40	86	7	132	23	23	23	30	1.99
12430373--12430526	74	2.0	75	90	6	240	20	12	40	27	1.88
12432392--12432606	73	2.9	73	81	6	256	38	17	20	24	1.93
12442269--12442300	16	2.0	16	100	0	64	25	6	6	62	1.42
12468947--12468979	15	2.2	15	89	10	50	66	12	18	3	1.36
12481361--12481409	23	2.1	23	96	0	89	32	30	6	30	1.82
12482941--12483004	31	2.1	31	100	0	128	45	9	9	35	1.69
12485920--12485956	18	2.1	18	100	0	74	32	27	16	24	1.96
12497586--12497634	2	26.0	2	88	12	77	51	0	0	48	1.00
12498966--12498997	7	4.6	7	96	0	55	46	9	0	43	1.35
12498963--12498997	14	2.5	14	90	0	61	48	8	0	42	1.33
12499100--12499711	335	1.8	335	86	4	885	36	9	5	48	1.59
12502723--12503184	231	2.0	231	93	2	786	29	10	7	52	1.63
12516589--12516700	52	2.2	52	95	0	197	21	30	29	18	1.97
12519946--12520022	34	2.2	34	88	2	118	36	12	20	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12520352--12520504	31	4.9	31	70	12	116	50	22	11	15	1.76
12533016--12533076	31	2.0	31	96	0	113	21	18	13	47	1.82
12544481--12544626	48	3.0	47	88	4	202	44	20	8	26	1.79
12545945--12546068	62	2.0	62	93	0	212	26	18	25	29	1.98
12548835--12548902	31	2.2	31	100	0	136	14	20	22	42	1.88
12557451--12557492	2	21.0	2	90	9	68	50	0	2	47	1.14
12557587--12557665	35	2.3	35	84	0	104	32	7	31	27	1.85
12557610--12557690	35	2.3	36	79	10	87	30	14	29	24	1.95
12572379--12572422	20	2.2	20	84	12	54	50	11	4	34	1.59
12579048--12579166	43	2.8	43	88	2	159	23	17	36	21	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66