genome.fa.s6.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  32  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11028028--11028052	13	1.9	13	100	0	50	44	0	8	48	1.32
11029235--11029295	2	30.5	2	100	0	122	49	0	0	50	1.00
11039915--11039957	21	2.0	21	81	0	50	30	9	34	25	1.87
11040348--11040410	22	2.9	22	97	0	117	42	23	3	30	1.70
11057600--11057645	20	2.3	20	92	0	74	43	21	6	28	1.77
11063239--11063284	19	2.4	20	82	10	60	54	0	2	43	1.12
11063686--11063723	20	1.9	20	100	0	76	28	5	21	44	1.73
11063688--11063731	20	2.2	20	87	0	61	27	6	25	40	1.80
11066389--11066424	15	2.4	15	90	0	54	27	2	13	55	1.52
11070162--11070207	19	2.4	20	82	10	60	54	0	2	43	1.12
11070611--11070648	20	1.9	20	100	0	76	28	5	21	44	1.73
11070611--11070656	20	2.3	20	92	0	74	28	4	23	43	1.73
11083497--11083544	21	2.3	21	79	17	55	31	45	0	22	1.53
11089589--11089790	31	6.5	31	90	0	323	25	17	19	38	1.93
11089632--11089818	93	2.0	90	86	5	230	26	18	19	35	1.95
11093613--11093925	118	2.7	118	89	3	486	22	18	31	27	1.97
11093766--11093838	31	2.4	30	76	15	76	17	16	35	30	1.92
11093882--11093972	46	2.0	45	100	0	173	24	19	30	24	1.98
11093767--11094090	164	2.0	163	90	0	504	21	20	31	26	1.98
11093930--11094295	118	3.1	118	90	1	576	22	22	28	26	1.99
11093646--11094207	282	2.0	281	89	0	847	22	20	29	27	1.98
11099631--11099979	145	2.4	145	80	0	376	32	19	17	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11101376--11101619	31	7.5	31	83	9	274	38	18	18	24	1.93
11101403--11101594	103	1.9	103	93	0	330	38	18	18	23	1.93
11102278--11102441	47	3.5	47	86	1	213	23	30	21	25	1.99
11102337--11102417	23	3.5	23	66	21	69	18	30	24	25	1.98
11102362--11102500	71	2.0	71	86	2	199	23	30	23	23	1.99
11102433--11102561	47	2.7	47	89	2	197	22	29	23	24	1.99
11102318--11102542	118	1.9	118	93	1	389	22	30	21	24	1.99
11102505--11102652	58	2.6	58	83	0	179	25	33	15	25	1.95
11102619--11102675	23	2.5	23	91	0	87	22	36	14	26	1.92
11103504--11103560	29	2.0	29	92	0	96	22	1	29	45	1.63
11103511--11103572	29	2.1	29	84	0	79	25	1	27	45	1.63
11103688--11103757	9	7.7	9	69	15	54	68	1	2	27	1.12
11103726--11103921	93	2.1	92	94	3	349	49	6	4	39	1.47
11104316--11104373	29	2.0	30	82	3	73	36	5	3	55	1.39
11107582--11107674	46	2.0	46	100	0	186	17	15	32	35	1.91
11111984--11112021	20	1.9	20	88	0	58	68	7	0	23	1.16
11112013--11112053	15	2.7	15	84	3	55	60	4	0	34	1.18
11112175--11112224	18	2.8	18	90	6	75	42	20	12	26	1.86
11112574--11112615	22	1.9	22	85	0	57	16	2	4	76	1.07
11119830--11119868	2	19.5	2	100	0	78	51	0	0	48	1.00
11120642--11120689	19	2.5	19	86	0	69	18	4	33	43	1.69
11129743--11129782	14	3.0	14	85	7	57	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11129741--11129783	16	2.8	15	86	13	61	44	0	0	55	0.99
11129952--11129998	19	2.3	19	85	10	58	21	8	34	36	1.84
11129994--11130024	16	1.9	16	93	0	53	29	22	25	22	1.99
11131406--11131446	4	10.2	4	89	0	55	43	0	7	48	1.30
11134745--11134785	2	21.0	2	95	5	75	51	0	48	0	1.00
11140799--11140840	21	2.0	21	81	9	50	42	11	11	33	1.78
11149922--11149977	28	2.0	28	100	0	112	25	0	21	53	1.46
11155629--11155682	23	2.3	23	81	6	65	5	11	5	77	1.10
11157398--11157591	97	2.0	97	91	2	318	36	14	11	37	1.83
11160961--11160991	11	2.8	11	90	0	53	70	0	0	29	0.87
11171718--11171820	38	2.6	40	86	3	147	18	14	41	25	1.88
11172163--11172259	39	2.5	40	83	6	110	26	19	21	31	1.97
11173686--11173734	22	2.3	22	82	10	57	51	0	0	48	1.00
11180446--11180479	15	2.3	14	85	14	50	70	2	0	26	1.01
11180762--11180808	3	17.0	3	83	16	66	72	0	27	0	0.85
11180761--11180808	19	2.5	19	100	0	96	72	0	27	0	0.84
11189929--11189953	13	1.9	13	100	0	50	48	8	0	44	1.32
11192188--11192242	2	28.0	2	83	3	67	45	1	3	49	1.30
11192234--11192307	35	2.1	35	82	5	85	44	2	8	44	1.47
11194348--11194376	7	4.3	7	91	8	51	68	0	0	31	0.89
11194348--11194376	13	2.1	14	93	6	51	68	0	0	31	0.89
11212533--11212756	63	3.6	62	83	4	249	24	31	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11213337--11213384	23	2.1	23	84	7	62	35	31	0	33	1.58
11216323--11216447	43	2.9	43	85	4	164	24	36	16	24	1.94
11222358--11222411	27	2.0	27	100	0	108	40	18	11	29	1.85
11238519--11238556	6	6.3	6	100	0	76	31	34	18	15	1.92
11244115--11244161	21	2.1	22	84	7	60	72	6	4	17	1.22
11248176--11248272	31	3.2	31	62	24	78	39	9	10	41	1.71
11248140--11248302	61	2.7	61	98	0	310	39	6	8	44	1.61
11249343--11249429	26	3.3	26	88	0	120	35	9	20	34	1.85
11249342--11249450	26	4.2	25	85	4	119	36	9	22	32	1.85
11249343--11249450	52	2.1	52	84	3	137	37	9	21	32	1.85
11249499--11249560	28	2.2	28	85	0	88	48	14	8	29	1.72
11249733--11249857	64	2.0	64	82	3	153	32	12	16	37	1.87
11251743--11251803	27	2.3	27	88	0	104	49	1	16	32	1.56
11253770--11253810	3	13.7	3	94	0	73	31	0	2	65	1.05
11257319--11257366	25	1.9	25	95	0	87	27	14	18	39	1.90
11257628--11257690	33	1.9	33	93	0	108	38	17	9	34	1.82
11259569--11259616	15	3.2	15	90	0	78	60	12	2	25	1.43
11260550--11260693	70	2.1	69	96	1	261	29	20	6	43	1.77
11272224--11272269	21	2.2	21	88	3	67	30	13	17	39	1.87
11272412--11272470	21	2.8	20	80	10	64	49	11	6	32	1.66
11272437--11272497	21	2.9	19	74	13	50	50	14	3	31	1.59
11272544--11272630	21	4.1	22	88	2	99	51	18	4	25	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11272412--11272664	139	1.8	139	83	10	338	45	15	7	31	1.73
11272725--11272790	21	3.1	21	82	0	87	45	22	7	24	1.78
11277686--11277710	13	1.9	13	100	0	50	44	0	8	48	1.32
11284678--11284738	20	3.0	20	88	4	95	34	13	14	37	1.85
11284678--11284739	21	3.0	21	90	2	99	33	12	16	37	1.87
11284894--11284958	21	3.1	21	82	8	71	50	20	4	24	1.66
11291633--11291694	21	3.0	21	82	0	79	51	19	4	24	1.66
11294723--11294816	27	3.5	27	100	0	188	58	3	0	38	1.14
11296507--11296541	17	2.1	17	89	5	54	51	0	2	45	1.16
11296647--11296704	23	2.5	23	86	8	82	72	3	8	13	1.20
11297325--11297377	16	3.4	16	84	2	63	77	0	13	9	0.99
11297325--11297379	23	2.3	23	81	3	56	78	0	12	9	0.97
11297895--11297922	2	14.0	2	100	0	56	50	0	50	0	1.00
11299101--11299151	25	2.0	25	81	7	59	64	3	9	21	1.40
11301285--11301325	21	2.1	19	86	9	55	60	9	0	29	1.28
11303233--11303358	43	3.0	42	87	3	180	23	34	18	24	1.96
11308749--11308783	16	2.2	16	89	0	52	40	2	8	48	1.49
11312244--11312311	34	2.0	34	100	0	136	20	8	14	55	1.65
11313696--11313729	17	2.1	16	88	5	50	29	0	11	58	1.33
11317569--11317612	15	2.9	15	83	10	63	2	22	2	72	1.07
11317568--11317614	5	9.4	5	79	6	51	2	21	2	74	1.03
11318442--11318568	35	3.5	36	86	9	143	22	13	35	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11318442--11318568	36	3.5	35	83	13	127	22	13	35	29	1.92
11318748--11318802	21	2.6	21	88	0	65	25	25	14	34	1.94
11322591--11322623	15	2.3	15	89	5	50	60	3	24	12	1.46
11326812--11326851	14	2.9	14	82	14	55	0	30	0	70	0.88
11326805--11326848	24	1.9	22	86	9	61	0	27	0	72	0.85
11326817--11326865	20	2.4	21	80	10	57	0	32	2	65	1.04
11328345--11328386	19	2.2	19	86	0	57	35	14	11	38	1.83
11329455--11329746	61	4.8	61	89	0	433	26	31	17	25	1.97
11330270--11330386	39	3.0	39	97	0	225	28	16	15	40	1.88
11333479--11333611	67	2.0	67	92	5	225	25	14	26	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66