genome.fa.s6.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr6
Parameters: 2 7 7 80 10 50 1000
Length:  26303135

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   

This is table  31  of  66  ( 7821 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10669105--10669268	54	3.0	53	86	2	229	20	16	40	22	1.91
10669916--10669955	2	20.0	2	89	0	62	45	0	5	50	1.23
10670453--10670779	68	4.9	68	78	4	286	36	11	19	33	1.87
10674611--10674640	15	1.9	16	93	6	53	43	3	20	33	1.68
10677481--10677527	23	2.0	23	87	4	67	38	4	10	46	1.58
10677765--10677797	17	1.9	17	88	11	50	39	3	15	42	1.62
10680484--10680531	25	1.9	25	86	0	69	29	18	27	25	1.98
10683473--10683532	24	2.6	21	74	25	59	18	8	26	46	1.77
10691147--10691196	4	12.5	4	80	16	59	0	26	0	74	0.83
10691141--10691209	32	2.2	31	82	14	81	0	30	0	69	0.89
10691311--10691350	21	1.9	21	85	10	55	2	17	2	77	0.99
10695123--10695170	19	2.6	18	86	3	69	37	8	0	54	1.31
10695123--10695165	19	2.3	19	92	4	70	41	6	0	51	1.29
10698881--10698910	5	6.0	5	92	0	51	3	20	0	76	0.92
10699782--10699921	55	2.7	52	85	8	171	21	17	37	23	1.93
10700424--10700477	2	26.0	2	89	10	74	46	3	0	48	1.20
10700776--10700814	19	2.1	19	85	0	51	58	2	2	35	1.25
10703474--10703529	25	2.2	25	90	0	85	28	25	16	30	1.96
10703937--10704080	2	71.0	2	81	2	117	45	6	0	40	1.34
10706587--10706833	34	6.9	35	73	14	175	28	34	13	23	1.93
10706632--10706834	73	2.8	73	87	0	280	28	34	13	23	1.93
10706584--10706807	107	2.1	106	80	6	238	29	33	12	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10707620--10707661	5	8.4	5	81	7	50	76	2	19	2	1.01
10709828--10709914	39	2.2	39	89	4	131	43	24	13	18	1.86
10713310--10713418	43	2.5	43	82	2	121	23	35	16	23	1.95
10714222--10714262	21	2.0	21	85	0	55	46	7	26	19	1.76
10721034--10721115	43	1.9	43	87	5	121	21	35	18	24	1.96
10726521--10726562	22	1.9	22	90	0	66	30	16	26	26	1.97
10729111--10729201	45	2.0	45	100	0	182	34	19	15	30	1.93
10734555--10734591	17	2.2	17	90	0	56	32	21	35	10	1.88
10738389--10738567	42	4.3	42	89	0	268	22	22	31	22	1.99
10739754--10739857	38	2.7	38	83	3	136	22	38	16	23	1.93
10743187--10743234	21	2.3	21	96	0	87	39	10	14	35	1.80
10750671--10750729	26	2.3	26	79	5	66	1	28	3	66	1.18
10750949--10751010	28	2.1	28	82	5	70	41	24	4	29	1.75
10754070--10754115	22	2.1	22	87	0	65	21	26	26	26	2.00
10754215--10754239	13	1.9	13	100	0	50	20	8	40	32	1.81
10757313--10757395	28	2.9	28	81	3	103	38	10	12	38	1.78
10760287--10760519	68	3.4	68	81	1	243	35	12	18	33	1.89
10761639--10761696	28	2.1	28	87	6	82	36	13	20	29	1.91
10761871--10761932	31	2.0	30	93	3	106	29	35	0	33	1.58
10764632--10764772	71	2.0	72	87	6	207	36	12	26	23	1.91
10766539--10766584	12	3.6	13	77	14	51	54	2	21	21	1.56
10766539--10766584	19	2.4	20	82	10	60	54	2	21	21	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10772366--10772403	19	2.0	19	100	0	76	47	5	5	42	1.48
10772933--10772991	29	2.1	28	84	9	75	30	3	6	59	1.40
10775460--10775487	10	2.8	10	100	0	56	50	28	10	10	1.71
10790193--10790234	20	2.1	20	100	0	84	45	4	19	30	1.71
10790942--10790992	23	2.2	23	82	0	57	27	7	37	27	1.84
10790965--10791107	58	2.5	58	84	0	187	25	13	33	27	1.94
10791071--10791426	47	7.6	47	81	0	361	25	17	30	26	1.98
10791056--10791426	141	2.6	141	77	5	399	25	18	30	25	1.98
10792065--10792265	31	6.5	31	91	3	309	24	19	19	36	1.95
10792065--10792265	91	2.2	93	93	3	345	24	19	19	36	1.95
10792263--10792330	34	2.0	34	100	0	136	20	20	23	35	1.96
10793714--10794042	145	2.3	144	81	3	365	27	18	19	33	1.96
10796152--10796489	118	2.9	118	82	1	435	28	27	18	24	1.98
10796798--10796822	3	8.3	3	100	0	50	32	0	0	68	0.90
10800352--10800491	31	4.5	31	89	0	208	40	18	14	27	1.89
10800835--10800955	63	1.9	63	86	0	170	37	9	28	23	1.87
10803985--10804231	68	3.6	68	78	9	234	35	17	9	37	1.82
10805373--10805424	27	1.9	27	88	0	77	50	3	19	26	1.65
10813880--10813991	36	3.1	36	87	2	118	24	16	36	23	1.94
10813894--10814008	36	3.2	36	87	2	151	20	13	41	23	1.88
10822126--10822338	42	5.0	42	81	4	205	20	33	19	25	1.97
10822126--10822338	84	2.5	84	81	5	234	20	33	19	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10823121--10823170	19	2.6	19	78	12	66	42	4	38	16	1.66
10825729--10825762	14	2.4	14	85	0	50	0	29	0	70	0.87
10825713--10825766	21	2.6	21	80	11	65	0	29	0	70	0.88
10826761--10826847	43	2.0	43	93	0	147	21	20	12	44	1.85
10832692--10833820	598	1.9	600	93	1	1964	38	10	15	35	1.82
10835710--10836022	158	2.0	158	88	0	457	31	17	18	32	1.94
10844058--10844144	29	3.0	29	75	9	79	27	24	12	35	1.92
10850545--10850682	43	3.2	41	78	8	132	28	17	29	24	1.97
10853279--10853435	63	2.5	63	87	2	235	24	33	18	23	1.97
10872501--10872598	19	5.1	19	61	11	56	20	16	40	22	1.91
10872822--10872862	21	2.0	21	85	0	55	26	26	19	26	1.99
10874372--10874526	63	2.5	63	80	2	168	26	30	17	25	1.97
10881082--10881211	64	2.0	64	93	0	224	26	4	26	42	1.75
10881542--10881678	43	3.2	43	77	6	152	29	18	28	24	1.98
10885947--10886044	19	5.1	19	65	11	56	21	39	17	21	1.92
10887987--10888149	59	2.8	57	84	6	193	40	12	9	38	1.75
10887987--10888149	29	5.6	28	81	7	173	40	12	9	38	1.75
10892651--10892703	20	2.7	20	77	11	54	58	9	1	30	1.40
10899118--10899154	19	1.9	19	100	0	74	27	0	29	43	1.55
10909366--10909407	19	2.2	19	86	0	57	35	9	11	42	1.74
10911341--10911453	32	3.4	32	72	11	111	23	12	27	36	1.91
10911303--10911478	67	2.6	68	85	5	218	25	12	26	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10911341--10911466	32	3.8	32	73	12	103	26	13	26	34	1.93
10911375--10911489	35	3.4	34	71	17	112	25	13	26	33	1.94
10912205--10912239	18	1.9	18	94	0	61	62	0	0	37	0.95
10912370--10912406	19	1.9	19	94	0	65	56	0	5	37	1.22
10912417--10912479	32	1.9	32	87	6	90	50	12	4	31	1.61
10924588--10924647	28	2.1	30	81	6	70	43	21	3	31	1.69
10925784--10925921	30	4.7	29	78	8	138	38	12	9	39	1.75
10925794--10925921	58	2.2	57	82	6	159	41	11	9	37	1.74
10926873--10928340	733	2.0	733	95	0	2632	33	17	15	34	1.91
10928526--10928550	6	4.2	6	100	0	50	36	0	0	64	0.94
10929995--10930113	62	1.9	62	83	5	152	38	25	15	20	1.92
10933980--10934040	29	2.1	29	96	0	113	37	18	14	29	1.90
10938776--10938819	20	2.2	20	88	11	65	68	11	11	9	1.40
10945259--10945318	28	2.1	28	100	0	120	41	28	0	30	1.56
10951102--10951137	19	1.9	18	88	5	54	22	27	13	36	1.92
10952964--10953009	20	2.3	20	96	0	83	28	4	21	45	1.71
10959431--10960338	449	2.0	451	88	3	1355	34	9	16	39	1.81
10960523--10960686	77	2.1	77	87	2	240	39	7	12	41	1.70
10962493--10962554	26	2.4	26	94	0	106	32	40	3	24	1.71
10965803--10965841	10	3.8	10	80	6	51	25	2	20	51	1.60
10971129--10971165	19	2.0	19	94	5	67	48	0	5	45	1.25
10971128--10971168	18	2.3	17	88	12	64	48	0	4	46	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10972240--10972322	34	2.4	34	80	4	87	33	9	30	26	1.88
10972460--10972525	22	2.9	22	81	4	78	50	16	22	10	1.76
10995570--10995623	28	2.0	27	88	3	81	29	16	22	31	1.96
11003376--11003435	28	2.1	30	84	6	79	31	8	18	41	1.80
11007752--11007785	16	2.1	16	88	0	50	50	0	2	47	1.16
11008908--11008990	28	3.0	28	77	7	96	25	27	21	25	1.99
11018285--11018319	16	2.2	16	90	5	54	34	2	37	25	1.71
11025269--11025297	13	2.1	14	93	6	51	34	0	0	65	0.93
11026140--11026237	36	2.7	36	88	0	142	21	19	39	19	1.92
11027303--11027335	13	2.5	13	100	0	66	21	6	24	48	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66